Karthikeyan Sivakumar

James Mitchell-White, Reza Omdivar, Benjamin Partridge et al.

This paper introduces Llettuce, an open-source tool designed to address the complexities of converting medical terms into OMOP standard concepts. Unlike existing solutions such as the Athena database search and Usagi, which struggle with semantic nuances and require substantial manual input, Llettuce leverages advanced natural language processing, including large language models and fuzzy matching, to automate and enhance the mapping process. Developed with a focus on GDPR compliance, Llettuce can be deployed locally, ensuring data protection while maintaining high performance in converting informal medical terms to standardised concepts.

Eduardo Aguilar-Bejarano, Daniel Lea, Karthikeyan Sivakumar et al.

Helix is an open-source, extensible, Python-based software framework to facilitate reproducible and interpretable machine learning workflows for tabular data. It addresses the growing need for transparent experimental data analytics provenance, ensuring that the entire analytical process -- including decisions around data transformation and methodological choices -- is documented, accessible, reproducible, and comprehensible to relevant stakeholders. The platform comprises modules for standardised data preprocessing, visualisation, machine learning model training, evaluation, interpretation, results inspection, and model prediction for unseen data. To further empower researchers without formal training in data science to derive meaningful and actionable insights, Helix features a user-friendly interface that enables the design of computational experiments, inspection of outcomes, including a novel interpretation approach to machine learning decisions using linguistic terms all within an integrated environment. Released under the MIT licence, Helix is accessible via GitHub and PyPI, supporting community-driven development and promoting adherence to the FAIR principles.

Rongjun Dong, Xin Chen, Morgan R Alexander et al.

Learning to generate images with internally repeated and periodic structures poses a fundamental challenge for machine learning and computer vision models, which are typically optimised for local texture statistics and semantic realism rather than global structural consistency. This limitation is particularly pronounced in applications requiring strict control over repetition scale, spacing, and boundary coherence, such as microtopographical biomaterial surfaces. In this work, biomaterial design serves as a use case to study conditional generation of repeated patterns under weak supervision and class imbalance. We propose DF-ACBlurGAN, a structure-aware conditional generative adversarial network that explicitly reasons about long-range repetition during training. The approach integrates frequency-domain repetition scale estimation, scale-adaptive Gaussian blurring, and unit-cell reconstruction to balance sharp local features with stable global periodicity. Conditioning on experimentally derived biological response labels, the model synthesises designs aligned with target functional outcomes. Evaluation across multiple biomaterial datasets demonstrates improved repetition consistency and controllable structural variation compared to conventional generative approaches.