Fan Xu

LG
h-index19
50papers
482citations
Novelty57%
AI Score60

50 Papers

BMJun 24, 2022Code
PSP: Million-level Protein Sequence Dataset for Protein Structure Prediction

Sirui Liu, Jun Zhang, Haotian Chu et al.

Proteins are essential component of human life and their structures are important for function and mechanism analysis. Recent work has shown the potential of AI-driven methods for protein structure prediction. However, the development of new models is restricted by the lack of dataset and benchmark training procedure. To the best of our knowledge, the existing open source datasets are far less to satisfy the needs of modern protein sequence-structure related research. To solve this problem, we present the first million-level protein structure prediction dataset with high coverage and diversity, named as PSP. This dataset consists of 570k true structure sequences (10TB) and 745k complementary distillation sequences (15TB). We provide in addition the benchmark training procedure for SOTA protein structure prediction model on this dataset. We validate the utility of this dataset for training by participating CAMEO contest in which our model won the first place. We hope our PSP dataset together with the training benchmark can enable a broader community of AI/biology researchers for AI-driven protein related research.

73.4AIJun 3
Agents' Last Exam

Yiyou Sun, Xinyang Han, Weichen Zhang et al.

Recent AI systems have achieved strong results on a wide range of benchmarks, yet these gains have not translated into economically meaningful deployment across many professional domains. We argue that this gap is largely an evaluation problem: widely used benchmarks lack sustained performance measurement on real and economically valuable workflows. This paper introduces Agents' Last Exam (ALE), a benchmark designed to evaluate AI agents on long-horizon, economically valuable, real-world tasks with verifiable outcomes. Developed in collaboration with 250+ industry experts, ALE covers non-physical industries defined with reference to O*NET / SOC 2018 (the U.S. federal occupational taxonomy). It is organized around a task taxonomy with 55 subfields grouped into 13 industry clusters covering 1K+ tasks. Current results show that the hardest tier remains far from saturated: across mainstream harness and backbone configurations, the average full pass rate is 2.6%. ALE is designed as a living benchmark: its task pool grows continuously as new workflows and industries are onboarded. More broadly, ALE is intended not merely as another leaderboard, but as an instrument for closing the gap between benchmark success and GDP-relevant impact.

5.3ITJun 3
Bounded Deep Unfolding for Joint Beamforming and Scheduling in Multi-Cell MIMO Networks

Jiansheng Li, Shuqi Chai, Fan Xu et al.

This paper investigates the joint resource block group (RBG) scheduling and beamforming optimization problem for weighted sum-rate (WSR) maximization in multi-cell multiple-input multiple-output (MIMO) downlink networks. While the Fast Fractional Programming (FastFP) framework provides a reliable model-driven solution, it suffers from conservative continuous beamforming updates and prohibitive computational overhead during the discrete RBG matching phase. To address these bottlenecks, we propose a joint deep unfolding framework comprising two core modules: P-Net and K-Net. For continuous beamforming, P-Net learns an adaptive relaxation factor along the analytical FastFP update direction. By strictly constraining this factor within an ascent-preserving interval, P-Net accelerates the optimization trajectory while rigorously retaining monotonic improvement and stationary-point convergence guarantees. For discrete RBG scheduling, K-Net learns a long-horizon priority policy that guides a low-complexity greedy assignment, effectively preserving the assignment quality while bypassing the high complexity of Hungarian matching. Both networks leverage analytical algorithmic priors and utilize recurrent parameter sharing, enabling flexible inference beyond the training horizon. Extensive simulations demonstrate that the proposed joint framework achieves higher WSR and faster execution times than conventional model-driven baselines, while generalizing robustly across unseen network scales, antenna configurations, and channel conditions without retraining.

ITJun 28, 2022
Fundamental Limits of Communication Efficiency for Model Aggregation in Distributed Learning: A Rate-Distortion Approach

Naifu Zhang, Meixia Tao, Jia Wang et al.

One of the main focuses in distributed learning is communication efficiency, since model aggregation at each round of training can consist of millions to billions of parameters. Several model compression methods, such as gradient quantization and sparsification, have been proposed to improve the communication efficiency of model aggregation. However, the information-theoretic minimum communication cost for a given distortion of gradient estimators is still unknown. In this paper, we study the fundamental limit of communication cost of model aggregation in distributed learning from a rate-distortion perspective. By formulating the model aggregation as a vector Gaussian CEO problem, we derive the rate region bound and sum-rate-distortion function for the model aggregation problem, which reveals the minimum communication rate at a particular gradient distortion upper bound. We also analyze the communication cost at each iteration and total communication cost based on the sum-rate-distortion function with the gradient statistics of real-world datasets. It is found that the communication gain by exploiting the correlation between worker nodes is significant for SignSGD, and a high distortion of gradient estimator can achieve low total communication cost in gradient compression.

CRApr 6, 2023
TBDetector:Transformer-Based Detector for Advanced Persistent Threats with Provenance Graph

Nan Wang, Xuezhi Wen, Dalin Zhang et al.

APT detection is difficult to detect due to the long-term latency, covert and slow multistage attack patterns of Advanced Persistent Threat (APT). To tackle these issues, we propose TBDetector, a transformer-based advanced persistent threat detection method for APT attack detection. Considering that provenance graphs provide rich historical information and have the powerful attacks historic correlation ability to identify anomalous activities, TBDetector employs provenance analysis for APT detection, which summarizes long-running system execution with space efficiency and utilizes transformer with self-attention based encoder-decoder to extract long-term contextual features of system states to detect slow-acting attacks. Furthermore, we further introduce anomaly scores to investigate the anomaly of different system states, where each state is calculated with an anomaly score corresponding to its similarity score and isolation score. To evaluate the effectiveness of the proposed method, we have conducted experiments on five public datasets, i.e., streamspot, cadets, shellshock, clearscope, and wget_baseline. Experimental results and comparisons with state-of-the-art methods have exhibited better performance of our proposed method.

CLJun 28, 2022Code
CC-Riddle: A Question Answering Dataset of Chinese Character Riddles

Fan Xu, Yunxiang Zhang, Xiaojun Wan

The Chinese character riddle is a unique form of cultural entertainment specific to the Chinese language. It typically comprises two parts: the riddle description and the solution. The solution to the riddle is a single character, while the riddle description primarily describes the glyph of the solution, occasionally supplemented with its explanation and pronunciation. Solving Chinese character riddles is a challenging task that demands understanding of character glyph, general knowledge, and a grasp of figurative language. In this paper, we construct a \textbf{C}hinese \textbf{C}haracter riddle dataset named CC-Riddle, which covers the majority of common simplified Chinese characters. The construction process is a combination of web crawling, language model generation and manual filtering. In generation stage, we input the Chinese phonetic alphabet, glyph and meaning of the solution character into the generation model, which then produces multiple riddle descriptions. The generated riddles are then manually filtered and the final CC-Riddle dataset is composed of both human-written riddles and these filtered, generated riddles. In order to assess the performance of language models on the task of solving character riddles, we use retrieval-based, generative and multiple-choice QA strategies to test three language models: BERT, ChatGPT and ChatGLM. The test results reveal that current language models still struggle to solve Chinese character riddles. CC-Riddle is publicly available at \url{https://github.com/pku0xff/CC-Riddle}.

CVOct 16, 2022
Fuzzy Positive Learning for Semi-supervised Semantic Segmentation

Pengchong Qiao, Zhidan Wei, Yu Wang et al.

Semi-supervised learning (SSL) essentially pursues class boundary exploration with less dependence on human annotations. Although typical attempts focus on ameliorating the inevitable error-prone pseudo-labeling, we think differently and resort to exhausting informative semantics from multiple probably correct candidate labels. In this paper, we introduce Fuzzy Positive Learning (FPL) for accurate SSL semantic segmentation in a plug-and-play fashion, targeting adaptively encouraging fuzzy positive predictions and suppressing highly-probable negatives. Being conceptually simple yet practically effective, FPL can remarkably alleviate interference from wrong pseudo labels and progressively achieve clear pixel-level semantic discrimination. Concretely, our FPL approach consists of two main components, including fuzzy positive assignment (FPA) to provide an adaptive number of labels for each pixel and fuzzy positive regularization (FPR) to restrict the predictions of fuzzy positive categories to be larger than the rest under different perturbations. Theoretical analysis and extensive experiments on Cityscapes and VOC 2012 with consistent performance gain justify the superiority of our approach.

LGJun 3, 2023
Exploring Global and Local Information for Anomaly Detection with Normal Samples

Fan Xu, Nan Wang, Xibin Zhao

Anomaly detection aims to detect data that do not conform to regular patterns, and such data is also called outliers. The anomalies to be detected are often tiny in proportion, containing crucial information, and are suitable for application scenes like intrusion detection, fraud detection, fault diagnosis, e-commerce platforms, et al. However, in many realistic scenarios, only the samples following normal behavior are observed, while we can hardly obtain any anomaly information. To address such problem, we propose an anomaly detection method GALDetector which is combined of global and local information based on observed normal samples. The proposed method can be divided into a three-stage method. Firstly, the global similar normal scores and the local sparsity scores of unlabeled samples are computed separately. Secondly, potential anomaly samples are separated from the unlabeled samples corresponding to these two scores and corresponding weights are assigned to the selected samples. Finally, a weighted anomaly detector is trained by loads of samples, then the detector is utilized to identify else anomalies. To evaluate the effectiveness of the proposed method, we conducted experiments on three categories of real-world datasets from diverse domains, and experimental results show that our method achieves better performance when compared with other state-of-the-art methods.

CVJul 6, 2022
$L_2$BN: Enhancing Batch Normalization by Equalizing the $L_2$ Norms of Features

Zhennan Wang, Kehan Li, Runyi Yu et al. · pku

In this paper, we analyze batch normalization from the perspective of discriminability and find the disadvantages ignored by previous studies: the difference in $l_2$ norms of sample features can hinder batch normalization from obtaining more distinguished inter-class features and more compact intra-class features. To address this issue, we propose a simple yet effective method to equalize the $l_2$ norms of sample features. Concretely, we $l_2$-normalize each sample feature before feeding them into batch normalization, and therefore the features are of the same magnitude. Since the proposed method combines the $l_2$ normalization and batch normalization, we name our method $L_2$BN. The $L_2$BN can strengthen the compactness of intra-class features and enlarge the discrepancy of inter-class features. The $L_2$BN is easy to implement and can exert its effect without any additional parameters or hyper-parameters. We evaluate the effectiveness of $L_2$BN through extensive experiments with various models on image classification and acoustic scene classification tasks. The results demonstrate that the $L_2$BN can boost the generalization ability of various neural network models and achieve considerable performance improvements.

7.1LGApr 13
AbLWR:A Context-Aware Listwise Ranking Framework for Antibody-Antigen Binding Affinity Prediction via Positive-Unlabeled Learning

Fan Xu, Zhi-an Huang, Haohuai He et al.

Accurate prediction of antibody-antigen binding affinity is fundamental to therapeutic design, yet remains constrained by severe label sparsity and the complexity of antigenic variations. In this paper, we propose AbLWR (Antibody-antigen binding affinity List-Wise Ranking), a novel framework that reformulates the conventional affinity regression task as a listwise ranking problem. To mitigate label sparsity, AbLWR incorporates a PU (Positive-Unlabeled) learning mechanism leveraging a dual-level contrastive objective and meta-optimized label refinement to learn robust representations. Furthermore, we address antigenic variation by employing a homologous antigen sampling strategy where Multi-Head Self-Attention (MHSA) explicitly models inter-sample relationships within training lists to capture subtle affinity nuances. Extensive experiments demonstrate that AbLWR significantly outperforms state-of-the-art baselines, improving the Precision@1 (P@1) by over 10$\%$ in randomized cross-validation experiments. Notably, case studies on Influenza and IL-33 validate its practical utility, demonstrating robust ranking consistency in distinguishing subtle viral mutations and efficiently prioritizing top-tier candidates for wet-lab screening.

LGDec 11, 2023Code
Revisiting Graph-Based Fraud Detection in Sight of Heterophily and Spectrum

Fan Xu, Nan Wang, Hao Wu et al.

Graph-based fraud detection (GFD) can be regarded as a challenging semi-supervised node binary classification task. In recent years, Graph Neural Networks (GNN) have been widely applied to GFD, characterizing the anomalous possibility of a node by aggregating neighbor information. However, fraud graphs are inherently heterophilic, thus most of GNNs perform poorly due to their assumption of homophily. In addition, due to the existence of heterophily and class imbalance problem, the existing models do not fully utilize the precious node label information. To address the above issues, this paper proposes a semi-supervised GNN-based fraud detector SEC-GFD. This detector includes a hybrid filtering module and a local environmental constraint module, the two modules are utilized to solve heterophily and label utilization problem respectively. The first module starts from the perspective of the spectral domain, and solves the heterophily problem to a certain extent. Specifically, it divides the spectrum into various mixed-frequency bands based on the correlation between spectrum energy distribution and heterophily. Then in order to make full use of the node label information, a local environmental constraint module is adaptively designed. The comprehensive experimental results on four real-world fraud detection datasets denote that SEC-GFD outperforms other competitive graph-based fraud detectors. We release our code at https://github.com/Sunxkissed/SEC-GFD.

LGFeb 1, 2025Code
OneForecast: A Universal Framework for Global and Regional Weather Forecasting

Yuan Gao, Hao Wu, Ruiqi Shu et al.

Accurate weather forecasts are important for disaster prevention, agricultural planning, etc. Traditional numerical weather prediction (NWP) methods offer physically interpretable high-accuracy predictions but are computationally expensive and fail to fully leverage rapidly growing historical data. In recent years, deep learning models have made significant progress in weather forecasting, but challenges remain, such as balancing global and regional high-resolution forecasts, excessive smoothing in extreme event predictions, and insufficient dynamic system modeling. To address these issues, this paper proposes a global-regional nested weather forecasting framework (OneForecast) based on graph neural networks. By combining a dynamic system perspective with multi-grid theory, we construct a multi-scale graph structure and densify the target region to capture local high-frequency features. We introduce an adaptive messaging mechanism, using dynamic gating units to deeply integrate node and edge features for more accurate extreme event forecasting. For high-resolution regional forecasts, we propose a neural nested grid method to mitigate boundary information loss. Experimental results show that OneForecast performs excellently across global to regional scales and short-term to long-term forecasts, especially in extreme event predictions. Codes link https://github.com/YuanGao-YG/OneForecast.

LGNov 17, 2023
Few-shot Message-Enhanced Contrastive Learning for Graph Anomaly Detection

Fan Xu, Nan Wang, Xuezhi Wen et al.

Graph anomaly detection plays a crucial role in identifying exceptional instances in graph data that deviate significantly from the majority. It has gained substantial attention in various domains of information security, including network intrusion, financial fraud, and malicious comments, et al. Existing methods are primarily developed in an unsupervised manner due to the challenge in obtaining labeled data. For lack of guidance from prior knowledge in unsupervised manner, the identified anomalies may prove to be data noise or individual data instances. In real-world scenarios, a limited batch of labeled anomalies can be captured, making it crucial to investigate the few-shot problem in graph anomaly detection. Taking advantage of this potential, we propose a novel few-shot Graph Anomaly Detection model called FMGAD (Few-shot Message-Enhanced Contrastive-based Graph Anomaly Detector). FMGAD leverages a self-supervised contrastive learning strategy within and across views to capture intrinsic and transferable structural representations. Furthermore, we propose the Deep-GNN message-enhanced reconstruction module, which extensively exploits the few-shot label information and enables long-range propagation to disseminate supervision signals to deeper unlabeled nodes. This module in turn assists in the training of self-supervised contrastive learning. Comprehensive experimental results on six real-world datasets demonstrate that FMGAD can achieve better performance than other state-of-the-art methods, regardless of artificially injected anomalies or domain-organic anomalies.

LGApr 3, 2023
FMGNN: Fused Manifold Graph Neural Network

Cheng Deng, Fan Xu, Jiaxing Ding et al.

Graph representation learning has been widely studied and demonstrated effectiveness in various graph tasks. Most existing works embed graph data in the Euclidean space, while recent works extend the embedding models to hyperbolic or spherical spaces to achieve better performance on graphs with complex structures, such as hierarchical or ring structures. Fusing the embedding from different manifolds can further take advantage of the embedding capabilities over different graph structures. However, existing embedding fusion methods mostly focus on concatenating or summing up the output embeddings, without considering interacting and aligning the embeddings of the same vertices on different manifolds, which can lead to distortion and impression in the final fusion results. Besides, it is also challenging to fuse the embeddings of the same vertices from different coordinate systems. In face of these challenges, we propose the Fused Manifold Graph Neural Network (FMGNN), a novel GNN architecture that embeds graphs into different Riemannian manifolds with interaction and alignment among these manifolds during training and fuses the vertex embeddings through the distances on different manifolds between vertices and selected landmarks, geometric coresets. Our experiments demonstrate that FMGNN yields superior performance over strong baselines on the benchmarks of node classification and link prediction tasks.

16.7LGMar 18
OMNIFLOW: A Physics-Grounded Multimodal Agent for Generalized Scientific Reasoning

Hao Wu, Yongheng Zhang, Yuan Gao et al.

Large Language Models (LLMs) have demonstrated exceptional logical reasoning capabilities but frequently struggle with the continuous spatiotemporal dynamics governed by Partial Differential Equations (PDEs), often resulting in non-physical hallucinations. Existing approaches typically resort to costly, domain-specific fine-tuning, which severely limits cross-domain generalization and interpretability. To bridge this gap, we propose OMNIFLOW, a neuro-symbolic architecture designed to ground frozen multimodal LLMs in fundamental physical laws without requiring domain-specific parameter updates. OMNIFLOW introduces a novel \textit{Semantic-Symbolic Alignment} mechanism that projects high-dimensional flow tensors into topological linguistic descriptors, enabling the model to perceive physical structures rather than raw pixel values. Furthermore, we construct a Physics-Guided Chain-of-Thought (PG-CoT) workflow that orchestrates reasoning through dynamic constraint injection (e.g., mass conservation) and iterative reflexive verification. We evaluate OMNIFLOW on a comprehensive benchmark spanning microscopic turbulence, theoretical Navier-Stokes equations, and macroscopic global weather forecasting. Empirical results demonstrate that OMNIFLOW significantly outperforms traditional deep learning baselines in zero-shot generalization and few-shot adaptation tasks. Crucially, it offers transparent, physically consistent reasoning reports, marking a paradigm shift from black-box fitting to interpretable scientific reasoning.

LGMay 27, 2025Code
NeuralOM: Neural Ocean Model for Subseasonal-to-Seasonal Simulation

Yuan Gao, Hao Wu, Fan Xu et al.

Long-term, high-fidelity simulation of slow-changing physical systems, such as the ocean and climate, presents a fundamental challenge in scientific computing. Traditional autoregressive machine learning models often fail in these tasks as minor errors accumulate and lead to rapid forecast degradation. To address this problem, we propose NeuralOM, a general neural operator framework designed for simulating complex, slow-changing dynamics. NeuralOM's core consists of two key innovations: (1) a Progressive Residual Correction Framework that decomposes the forecasting task into a series of fine-grained refinement steps, effectively suppressing long-term error accumulation; and (2) a Physics-Guided Graph Network whose built-in adaptive messaging mechanism explicitly models multi-scale physical interactions, such as gradient-driven flows and multiplicative couplings, thereby enhancing physical consistency while maintaining computational efficiency. We validate NeuralOM on the challenging task of global Subseasonal-to-Seasonal (S2S) ocean simulation. Extensive experiments demonstrate that NeuralOM not only surpasses state-of-the-art models in forecast accuracy and long-term stability, but also excels in simulating extreme events. For instance, at a 60-day lead time, NeuralOM achieves a 13.3% lower RMSE compared to the best-performing baseline, offering a stable, efficient, and physically-aware paradigm for data-driven scientific computing. Code link: https://github.com/YuanGao-YG/NeuralOM.

LGDec 12, 2025
NeuralOGCM: Differentiable Ocean Modeling with Learnable Physics

Hao Wu, Yuan Gao, Fan Xu et al.

High-precision scientific simulation faces a long-standing trade-off between computational efficiency and physical fidelity. To address this challenge, we propose NeuralOGCM, an ocean modeling framework that fuses differentiable programming with deep learning. At the core of NeuralOGCM is a fully differentiable dynamical solver, which leverages physics knowledge as its core inductive bias. The learnable physics integration captures large-scale, deterministic physical evolution, and transforms key physical parameters (e.g., diffusion coefficients) into learnable parameters, enabling the model to autonomously optimize its physical core via end-to-end training. Concurrently, a deep neural network learns to correct for subgrid-scale processes and discretization errors not captured by the physics model. Both components work in synergy, with their outputs integrated by a unified ODE solver. Experiments demonstrate that NeuralOGCM maintains long-term stability and physical consistency, significantly outperforming traditional numerical models in speed and pure AI baselines in accuracy. Our work paves a new path for building fast, stable, and physically-plausible models for scientific computing.

LGJan 9
Breaking Model Lock-in: Cost-Efficient Zero-Shot LLM Routing via a Universal Latent Space

Cheng Yan, Wuyang Zhang, Zhiyuan Ning et al.

The rapid proliferation of Large Language Models (LLMs) has led to a fragmented and inefficient ecosystem, a state of ``model lock-in'' where seamlessly integrating novel models remains a significant bottleneck. Current routing frameworks require exhaustive, costly retraining, hindering scalability and adaptability. We introduce ZeroRouter, a new paradigm for LLM routing that breaks this lock-in. Our approach is founded on a universal latent space, a model-agnostic representation of query difficulty that fundamentally decouples the characterization of a query from the profiling of a model. This allows for zero-shot onboarding of new models without full-scale retraining. ZeroRouter features a context-aware predictor that maps queries to this universal space and a dual-mode optimizer that balances accuracy, cost, and latency. Our framework consistently outperforms all baselines, delivering higher accuracy at lower cost and latency.

AIJan 12
AscendKernelGen: A Systematic Study of LLM-Based Kernel Generation for Neural Processing Units

Xinzi Cao, Jianyang Zhai, Pengfei Li et al.

To meet the ever-increasing demand for computational efficiency, Neural Processing Units (NPUs) have become critical in modern AI infrastructure. However, unlocking their full potential requires developing high-performance compute kernels using vendor-specific Domain-Specific Languages (DSLs), a task that demands deep hardware expertise and is labor-intensive. While Large Language Models (LLMs) have shown promise in general code generation, they struggle with the strict constraints and scarcity of training data in the NPU domain. Our preliminary study reveals that state-of-the-art general-purpose LLMs fail to generate functional complex kernels for Ascend NPUs, yielding a near-zero success rate. To address these challenges, we propose AscendKernelGen, a generation-evaluation integrated framework for NPU kernel development. We introduce Ascend-CoT, a high-quality dataset incorporating chain-of-thought reasoning derived from real-world kernel implementations, and KernelGen-LM, a domain-adaptive model trained via supervised fine-tuning and reinforcement learning with execution feedback. Furthermore, we design NPUKernelBench, a comprehensive benchmark for assessing compilation, correctness, and performance across varying complexity levels. Experimental results demonstrate that our approach significantly bridges the gap between general LLMs and hardware-specific coding. Specifically, the compilation success rate on complex Level-2 kernels improves from 0% to 95.5% (Pass@10), while functional correctness achieves 64.3% compared to the baseline's complete failure. These results highlight the critical role of domain-specific reasoning and rigorous evaluation in automating accelerator-aware code generation.

CLOct 22, 2025Code
HAD: HAllucination Detection Language Models Based on a Comprehensive Hallucination Taxonomy

Fan Xu, Xinyu Hu, Zhenghan Yu et al. · pku

The increasing reliance on natural language generation (NLG) models, particularly large language models, has raised concerns about the reliability and accuracy of their outputs. A key challenge is hallucination, where models produce plausible but incorrect information. As a result, hallucination detection has become a critical task. In this work, we introduce a comprehensive hallucination taxonomy with 11 categories across various NLG tasks and propose the HAllucination Detection (HAD) models https://github.com/pku0xff/HAD, which integrate hallucination detection, span-level identification, and correction into a single inference process. Trained on an elaborate synthetic dataset of about 90K samples, our HAD models are versatile and can be applied to various NLG tasks. We also carefully annotate a test set for hallucination detection, called HADTest, which contains 2,248 samples. Evaluations on in-domain and out-of-domain test sets show that our HAD models generally outperform the existing baselines, achieving state-of-the-art results on HaluEval, FactCHD, and FaithBench, confirming their robustness and versatility.

CLOct 22, 2025Code
JointCQ: Improving Factual Hallucination Detection with Joint Claim and Query Generation

Fan Xu, Huixuan Zhang, Zhenliang Zhang et al. · pku

Current large language models (LLMs) often suffer from hallucination issues, i,e, generating content that appears factual but is actually unreliable. A typical hallucination detection pipeline involves response decomposition (i.e., claim extraction), query generation, evidence collection (i.e., search or retrieval), and claim verification. However, existing methods exhibit limitations in the first two stages, such as context loss during claim extraction and low specificity in query generation, resulting in degraded performance across the hallucination detection pipeline. In this work, we introduce JointCQ https://github.com/pku0xff/JointCQ, a joint claim-and-query generation framework designed to construct an effective and efficient claim-query generator. Our framework leverages elaborately designed evaluation criteria to filter synthesized training data, and finetunes a language model for joint claim extraction and query generation, providing reliable and informative inputs for downstream search and verification. Experimental results demonstrate that our method outperforms previous methods on multiple open-domain QA hallucination detection benchmarks, advancing the goal of more trustworthy and transparent language model systems.

CVAug 12, 2025Code
PADReg: Physics-Aware Deformable Registration Guided by Contact Force for Ultrasound Sequences

Yimeng Geng, Mingyang Zhao, Fan Xu et al.

Ultrasound deformable registration estimates spatial transformations between pairs of deformed ultrasound images, which is crucial for capturing biomechanical properties and enhancing diagnostic accuracy in diseases such as thyroid nodules and breast cancer. However, ultrasound deformable registration remains highly challenging, especially under large deformation. The inherently low contrast, heavy noise and ambiguous tissue boundaries in ultrasound images severely hinder reliable feature extraction and correspondence matching. Existing methods often suffer from poor anatomical alignment and lack physical interpretability. To address the problem, we propose PADReg, a physics-aware deformable registration framework guided by contact force. PADReg leverages synchronized contact force measured by robotic ultrasound systems as a physical prior to constrain the registration. Specifically, instead of directly predicting deformation fields, we first construct a pixel-wise stiffness map utilizing the multi-modal information from contact force and ultrasound images. The stiffness map is then combined with force data to estimate a dense deformation field, through a lightweight physics-aware module inspired by Hooke's law. This design enables PADReg to achieve physically plausible registration with better anatomical alignment than previous methods relying solely on image similarity. Experiments on in-vivo datasets demonstrate that it attains a HD95 of 12.90, which is 21.34\% better than state-of-the-art methods. The source code is available at https://github.com/evelynskip/PADReg.

LGMay 14, 2025Code
On the Learning with Augmented Class via Forests

Fan Xu, Wuyang Chen, Wei Gao

Decision trees and forests have achieved successes in various real applications, most working with all testing classes known in training data. In this work, we focus on learning with augmented class via forests, where an augmented class may appear in testing data yet not in training data. We incorporate information of augmented class into trees' splitting, that is, augmented Gini impurity, a new splitting criterion is introduced to exploit some unlabeled data from testing distribution. We then develop the Learning with Augmented Class via Forests (short for LACForest) approach, which constructs shallow forests according to the augmented Gini impurity and then splits forests with pseudo-labeled augmented instances for better performance. We also develop deep neural forests via an optimization objective based on our augmented Gini impurity, which essentially utilizes the representation power of neural networks for forests. Theoretically, we present the convergence analysis for our augmented Gini impurity, and we finally conduct experiments to evaluate our approaches. The code is available at https://github.com/nju-xuf/LACForest.

CVMay 20, 2018Code
DLBI: Deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy

Yu Li, Fan Xu, Fa Zhang et al.

Super-resolution fluorescence microscopy, with a resolution beyond the diffraction limit of light, has become an indispensable tool to directly visualize biological structures in living cells at a nanometer-scale resolution. Despite advances in high-density super-resolution fluorescent techniques, existing methods still have bottlenecks, including extremely long execution time, artificial thinning and thickening of structures, and lack of ability to capture latent structures. Here we propose a novel deep learning guided Bayesian inference approach, DLBI, for the time-series analysis of high-density fluorescent images. Our method combines the strength of deep learning and statistical inference, where deep learning captures the underlying distribution of the fluorophores that are consistent with the observed time-series fluorescent images by exploring local features and correlation along time-axis, and statistical inference further refines the ultrastructure extracted by deep learning and endues physical meaning to the final image. Comprehensive experimental results on both real and simulated datasets demonstrate that our method provides more accurate and realistic local patch and large-field reconstruction than the state-of-the-art method, the 3B analysis, while our method is more than two orders of magnitude faster. The main program is available at https://github.com/lykaust15/DLBI

26.2AIMay 9
PnP-Corrector: A Universal Correction Framework for Coupled Spatiotemporal Forecasting

Hao Wu, Fan Xu, Yuxu Lu et al.

Coupled spatiotemporal forecasting is important for predicting the future evolution of multiple interacting dynamical systems, such as in climate models. However, existing methods are severely constrained by the persistent bottleneck of compounding errors. In coupled systems, errors from each subsystem simulator propagate and amplify one another, a phenomenon we term Reciprocal Error Amplification, leading to a rapid collapse of long-range predictions. To address this challenge, we propose a universal framework called PnP-Corrector (Plug-and-Play Corrector). The core idea of our framework is to decouple the physical simulation from the error correction process: it freezes pre-trained physics simulation engines and exclusively trains a correction agent to proactively counteract the systematic biases emerging from the coupled system. Furthermore, we design an efficient predictive model architecture, DSLCast, to serve as the backbone of this framework. Extensive experiments demonstrate that our method significantly enhances the long-term stability and accuracy of coupled forecasting systems. For instance, in the challenging task of a 300-day global ocean-atmosphere coupled forecast, our PnP-Corrector framework reduces the prediction error of the baseline model by 29% and surpasses state-of-the-art models on several key metrics.

32.9LGMay 7
Tyche: One Step Flow for Efficient Probabilistic Weather Forecasting

Fan Xu, Yuan Gao, Kun Wang et al.

Probabilistic weather forecasting requires not only accurate trajectories, but calibrated distributions over plausible atmospheric futures. Recent data-driven systems have achieved remarkable deterministic skill, and diffusion-based ensemble forecasters have substantially improved sample realism and uncertainty quantification. However, their inference cost scales with forecast horizon, ensemble size, and the number of denoising steps required for each transition, making large operational ensembles expensive. To address this, we present Tyche, a one-step conditional flow model for efficient probabilistic weather forecasting. Tyche models the conditional forecast distribution with a destination-aware average-velocity flow that maps Gaussian noise directly to future weather states in a single function evaluation (1-NFE). To make this one-step transport learnable in high-dimensional geophysical fields, we derive a JVP-regularized rectification objective that enforces temporal self-consistency across source and destination flow timesteps without explicitly forming Jacobians. The transport field is parameterized by an isotropic Swin-style transformer that preserves fine-scale spatial structure while remaining scalable on global grids. To improve ensemble reliability under autoregressive forecasting, we further introduce a rollout-based finetuning stage with curriculum CRPS calibration supervision. Experiments on ERA5 at 1.5$^\circ$ and 6-hour resolution show that our Tyche, using merely a single NFE, matches or exceeds the forecast skill and calibration of state-of-the-art multi-step generative baselines and the operational ECMWF IFS ensemble.

39.3ROMay 5
RoboAlign-R1: Distilled Multimodal Reward Alignment for Robot Video World Models

Hao Wu, Yuqi Li, Yuan Gao et al.

Existing robot video world models are typically trained with low-level objectives such as reconstruction and perceptual similarity, which are poorly aligned with the capabilities that matter most for robot decision making, including instruction following, manipulation success, and physical plausibility. They also suffer from error accumulation in long-horizon autoregressive prediction. We present RoboAlign-R1, a framework that combines reward-aligned post-training with stabilized long-horizon inference for robot video world models. We construct RobotWorldBench, a benchmark of 10,000 annotated video-instruction pairs collected from four robot data sources, and train a multimodal teacher judge, RoboAlign-Judge, to provide fine-grained six-dimensional evaluation of generated videos. We then distill the teacher into a lightweight student reward model for efficient reinforcement-learning-based post-training. To reduce long-horizon rollout drift, we further introduce Sliding Window Re-encoding (SWR), a training-free inference strategy that periodically refreshes the generation context. Under our in-domain evaluation protocol, RoboAlign-R1 improves the aggregate six-dimension score by 10.1% over the strongest baseline, including gains of 7.5% on Manipulation Accuracy and 4.6% on Instruction Following; these ranking improvements are further supported by an external VLM-based cross-check and a blinded human study. Meanwhile, SWR improves long-horizon prediction quality with only about 1% additional latency, yielding a 2.8% gain in SSIM and a 9.8% reduction in LPIPS. Together, these results show that reward-aligned post-training and stabilized long-horizon decoding improve task consistency, physical realism, and long-horizon prediction quality in robot video world models.

LGJan 21
PCL-Reasoner-V1.5: Advancing Math Reasoning with Offline Reinforcement Learning

Yao Lu, Dengdong Fan, Jianzheng Nie et al.

We present PCL-Reasoner-V1.5, a 32-billion-parameter large language model (LLM) for mathematical reasoning. The model is built upon Qwen2.5-32B and refined via supervised fine-tuning (SFT) followed by reinforcement learning (RL). A central innovation is our proposed offline RL method, which provides superior training stability and efficiency over standard online RL methods such as GRPO. Our model achieves state-of-the-art performance among models post-trained on Qwen2.5-32B, attaining average accuracies of 90.9% on AIME 2024 and 85.6% on AIME 2025. Our work demonstrates offline RL as a stable and efficient paradigm for advancing reasoning in LLMs. All experiments were conducted on Huawei Ascend 910C NPUs.

LGMar 18, 2024
Spatio-Temporal Fluid Dynamics Modeling via Physical-Awareness and Parameter Diffusion Guidance

Hao Wu, Fan Xu, Yifan Duan et al.

This paper proposes a two-stage framework named ST-PAD for spatio-temporal fluid dynamics modeling in the field of earth sciences, aiming to achieve high-precision simulation and prediction of fluid dynamics through spatio-temporal physics awareness and parameter diffusion guidance. In the upstream stage, we design a vector quantization reconstruction module with temporal evolution characteristics, ensuring balanced and resilient parameter distribution by introducing general physical constraints. In the downstream stage, a diffusion probability network involving parameters is utilized to generate high-quality future states of fluids, while enhancing the model's generalization ability by perceiving parameters in various physical setups. Extensive experiments on multiple benchmark datasets have verified the effectiveness and robustness of the ST-PAD framework, which showcase that ST-PAD outperforms current mainstream models in fluid dynamics modeling and prediction, especially in effectively capturing local representations and maintaining significant advantages in OOD generations.

LGMay 25, 2025
Turb-L1: Achieving Long-term Turbulence Tracing By Tackling Spectral Bias

Hao Wu, Yuan Gao, Chang Liu et al.

Accurately predicting the long-term evolution of turbulence is crucial for advancing scientific understanding and optimizing engineering applications. However, existing deep learning methods face significant bottlenecks in long-term autoregressive prediction, which exhibit excessive smoothing and fail to accurately track complex fluid dynamics. Our extensive experimental and spectral analysis of prevailing methods provides an interpretable explanation for this shortcoming, identifying Spectral Bias as the core obstacle. Concretely, spectral bias is the inherent tendency of models to favor low-frequency, smooth features while overlooking critical high-frequency details during training, thus reducing fidelity and causing physical distortions in long-term predictions. Building on this insight, we propose Turb-L1, an innovative turbulence prediction method, which utilizes a Hierarchical Dynamics Synthesis mechanism within a multi-grid architecture to explicitly overcome spectral bias. It accurately captures cross-scale interactions and preserves the fidelity of high-frequency dynamics, enabling reliable long-term tracking of turbulence evolution. Extensive experiments on the 2D turbulence benchmark show that Turb-L1 demonstrates excellent performance: (I) In long-term predictions, it reduces Mean Squared Error (MSE) by $80.3\%$ and increases Structural Similarity (SSIM) by over $9\times$ compared to the SOTA baseline, significantly improving prediction fidelity. (II) It effectively overcomes spectral bias, accurately reproducing the full enstrophy spectrum and maintaining physical realism in high-wavenumber regions, thus avoiding the spectral distortions or spurious energy accumulation seen in other methods.

CLMar 29, 2024
SLFNet: Generating Semantic Logic Forms from Natural Language Using Semantic Probability Graphs

Hao Wu, Fan Xu

Building natural language interfaces typically uses a semantic parser to parse the user's natural language and convert it into structured \textbf{S}emantic \textbf{L}ogic \textbf{F}orms (SLFs). The mainstream approach is to adopt a sequence-to-sequence framework, which requires that natural language commands and SLFs must be represented serially. Since a single natural language may have multiple SLFs or multiple natural language commands may have the same SLF, training a sequence-to-sequence model is sensitive to the choice among them, a phenomenon recorded as "order matters". To solve this problem, we propose a novel neural network, SLFNet, which firstly incorporates dependent syntactic information as prior knowledge and can capture the long-range interactions between contextual information and words. Secondly construct semantic probability graphs to obtain local dependencies between predictor variables. Finally we propose the Multi-Head SLF Attention mechanism to synthesize SLFs from natural language commands based on Sequence-to-Slots. Experiments show that SLFNet achieves state-of-the-art performance on the ChineseQCI-TS and Okapi datasets, and competitive performance on the ATIS dataset.

CVSep 22, 2025
Breaking the Discretization Barrier of Continuous Physics Simulation Learning

Fan Xu, Hao Wu, Nan Wang et al.

The modeling of complicated time-evolving physical dynamics from partial observations is a long-standing challenge. Particularly, observations can be sparsely distributed in a seemingly random or unstructured manner, making it difficult to capture highly nonlinear features in a variety of scientific and engineering problems. However, existing data-driven approaches are often constrained by fixed spatial and temporal discretization. While some researchers attempt to achieve spatio-temporal continuity by designing novel strategies, they either overly rely on traditional numerical methods or fail to truly overcome the limitations imposed by discretization. To address these, we propose CoPS, a purely data-driven methods, to effectively model continuous physics simulation from partial observations. Specifically, we employ multiplicative filter network to fuse and encode spatial information with the corresponding observations. Then we customize geometric grids and use message-passing mechanism to map features from original spatial domain to the customized grids. Subsequently, CoPS models continuous-time dynamics by designing multi-scale graph ODEs, while introducing a Markov-based neural auto-correction module to assist and constrain the continuous extrapolations. Comprehensive experiments demonstrate that CoPS advances the state-of-the-art methods in space-time continuous modeling across various scenarios.

LGFeb 26, 2025
BeamVQ: Beam Search with Vector Quantization to Mitigate Data Scarcity in Physical Spatiotemporal Forecasting

Weiyan Wang, Xingjian Shi, Ruiqi Shu et al.

In practice, physical spatiotemporal forecasting can suffer from data scarcity, because collecting large-scale data is non-trivial, especially for extreme events. Hence, we propose \method{}, a novel probabilistic framework to realize iterative self-training with new self-ensemble strategies, achieving better physical consistency and generalization on extreme events. Following any base forecasting model, we can encode its deterministic outputs into a latent space and retrieve multiple codebook entries to generate probabilistic outputs. Then BeamVQ extends the beam search from discrete spaces to the continuous state spaces in this field. We can further employ domain-specific metrics (e.g., Critical Success Index for extreme events) to filter out the top-k candidates and develop the new self-ensemble strategy by combining the high-quality candidates. The self-ensemble can not only improve the inference quality and robustness but also iteratively augment the training datasets during continuous self-training. Consequently, BeamVQ realizes the exploration of rare but critical phenomena beyond the original dataset. Comprehensive experiments on different benchmarks and backbones show that BeamVQ consistently reduces forecasting MSE (up to 39%), enhancing extreme events detection and proving its effectiveness in handling data scarcity.

LGOct 5, 2025
Spatiotemporal Forecasting as Planning: A Model-Based Reinforcement Learning Approach with Generative World Models

Hao Wu, Yuan Gao, Xingjian Shi et al.

To address the dual challenges of inherent stochasticity and non-differentiable metrics in physical spatiotemporal forecasting, we propose Spatiotemporal Forecasting as Planning (SFP), a new paradigm grounded in Model-Based Reinforcement Learning. SFP constructs a novel Generative World Model to simulate diverse, high-fidelity future states, enabling an "imagination-based" environmental simulation. Within this framework, a base forecasting model acts as an agent, guided by a beam search-based planning algorithm that leverages non-differentiable domain metrics as reward signals to explore high-return future sequences. These identified high-reward candidates then serve as pseudo-labels to continuously optimize the agent's policy through iterative self-training, significantly reducing prediction error and demonstrating exceptional performance on critical domain metrics like capturing extreme events.

LGSep 25, 2025
Differential-Integral Neural Operator for Long-Term Turbulence Forecasting

Hao Wu, Yuan Gao, Fan Xu et al.

Accurately forecasting the long-term evolution of turbulence represents a grand challenge in scientific computing and is crucial for applications ranging from climate modeling to aerospace engineering. Existing deep learning methods, particularly neural operators, often fail in long-term autoregressive predictions, suffering from catastrophic error accumulation and a loss of physical fidelity. This failure stems from their inability to simultaneously capture the distinct mathematical structures that govern turbulent dynamics: local, dissipative effects and global, non-local interactions. In this paper, we propose the {\textbf{\underline{D}}}ifferential-{\textbf{\underline{I}}}ntegral {\textbf{\underline{N}}}eural {\textbf{\underline{O}}}perator (\method{}), a novel framework designed from a first-principles approach of operator decomposition. \method{} explicitly models the turbulent evolution through parallel branches that learn distinct physical operators: a local differential operator, realized by a constrained convolutional network that provably converges to a derivative, and a global integral operator, captured by a Transformer architecture that learns a data-driven global kernel. This physics-based decomposition endows \method{} with exceptional stability and robustness. Through extensive experiments on the challenging 2D Kolmogorov flow benchmark, we demonstrate that \method{} significantly outperforms state-of-the-art models in long-term forecasting. It successfully suppresses error accumulation over hundreds of timesteps, maintains high fidelity in both the vorticity fields and energy spectra, and establishes a new benchmark for physically consistent, long-range turbulence forecast.

IRJun 10, 2025
Multimodal Representation Alignment for Cross-modal Information Retrieval

Fan Xu, Luis A. Leiva

Different machine learning models can represent the same underlying concept in different ways. This variability is particularly valuable for in-the-wild multimodal retrieval, where the objective is to identify the corresponding representation in one modality given another modality as input. This challenge can be effectively framed as a feature alignment problem. For example, given a sentence encoded by a language model, retrieve the most semantically aligned image based on features produced by an image encoder, or vice versa. In this work, we first investigate the geometric relationships between visual and textual embeddings derived from both vision-language models and combined unimodal models. We then align these representations using four standard similarity metrics as well as two learned ones, implemented via neural networks. Our findings indicate that the Wasserstein distance can serve as an informative measure of the modality gap, while cosine similarity consistently outperforms alternative metrics in feature alignment tasks. Furthermore, we observe that conventional architectures such as multilayer perceptrons are insufficient for capturing the complex interactions between image and text representations. Our study offers novel insights and practical considerations for researchers working in multimodal information retrieval, particularly in real-world, cross-modal applications.

CLApr 14, 2025
C-FAITH: A Chinese Fine-Grained Benchmark for Automated Hallucination Evaluation

Xu Zhang, Zhifei Liu, Jiahao Wang et al. · pku

Despite the rapid advancement of large language models, they remain highly susceptible to generating hallucinations, which significantly hinders their widespread application. Hallucination research requires dynamic and fine-grained evaluation. However, most existing hallucination benchmarks (especially in Chinese language) rely on human annotations, making automatical and cost-effective hallucination evaluation challenging. To address this, we introduce HaluAgent, an agentic framework that automatically constructs fine-grained QA dataset based on some knowledge documents. Our experiments demonstrate that the manually designed rules and prompt optimization can improve the quality of generated data. Using HaluAgent, we construct C-FAITH, a Chinese QA hallucination benchmark created from 1,399 knowledge documents obtained from web scraping, totaling 60,702 entries. We comprehensively evaluate 16 mainstream LLMs with our proposed C-FAITH, providing detailed experimental results and analysis.

LGJan 4
Advanced Global Wildfire Activity Modeling with Hierarchical Graph ODE

Fan Xu, Wei Gong, Hao Wu et al.

Wildfires, as an integral component of the Earth system, are governed by a complex interplay of atmospheric, oceanic, and terrestrial processes spanning a vast range of spatiotemporal scales. Modeling their global activity on large timescales is therefore a critical yet challenging task. While deep learning has recently achieved significant breakthroughs in global weather forecasting, its potential for global wildfire behavior prediction remains underexplored. In this work, we reframe this problem and introduce the Hierarchical Graph ODE (HiGO), a novel framework designed to learn the multi-scale, continuous-time dynamics of wildfires. Specifically, we represent the Earth system as a multi-level graph hierarchy and propose an adaptive filtering message passing mechanism for both intra- and inter-level information flow, enabling more effective feature extraction and fusion. Furthermore, we incorporate GNN-parameterized Neural ODE modules at multiple levels to explicitly learn the continuous dynamics inherent to each scale. Through extensive experiments on the SeasFire Cube dataset, we demonstrate that HiGO significantly outperforms state-of-the-art baselines on long-range wildfire forecasting. Moreover, its continuous-time predictions exhibit strong observational consistency, highlighting its potential for real-world applications.

LGOct 28, 2025
Unlocking Out-of-Distribution Generalization in Dynamics through Physics-Guided Augmentation

Fan Xu, Hao Wu, Kun Wang et al.

In dynamical system modeling, traditional numerical methods are limited by high computational costs, while modern data-driven approaches struggle with data scarcity and distribution shifts. To address these fundamental limitations, we first propose SPARK, a physics-guided quantitative augmentation plugin. Specifically, SPARK utilizes a reconstruction autoencoder to integrate physical parameters into a physics-rich discrete state dictionary. This state dictionary then acts as a structured dictionary of physical states, enabling the creation of new, physically-plausible training samples via principled interpolation in the latent space. Further, for downstream prediction, these augmented representations are seamlessly integrated with a Fourier-enhanced Graph ODE, a combination designed to robustly model the enriched data distribution while capturing long-term temporal dependencies. Extensive experiments on diverse benchmarks demonstrate that SPARK significantly outperforms state-of-the-art baselines, particularly in challenging out-of-distribution scenarios and data-scarce regimes, proving the efficacy of our physics-guided augmentation paradigm.

CLOct 7, 2025
MMA-ASIA: A Multilingual and Multimodal Alignment Framework for Culturally-Grounded Evaluation

Weihua Zheng, Zhengyuan Liu, Tanmoy Chakraborty et al.

Large language models (LLMs) are now used worldwide, yet their multimodal understanding and reasoning often degrade outside Western, high-resource settings. We propose MMA-ASIA, a comprehensive framework to evaluate LLMs' cultural awareness with a focus on Asian contexts. MMA-ASIA centers on a human-curated, multilingual, and multimodally aligned multiple-choice benchmark covering 8 Asian countries and 10 languages, comprising 27,000 questions; over 79 percent require multi-step reasoning grounded in cultural context, moving beyond simple memorization. To our knowledge, this is the first dataset aligned at the input level across three modalities: text, image (visual question answering), and speech. This enables direct tests of cross-modal transfer. Building on this benchmark, we propose a five-dimensional evaluation protocol that measures: (i) cultural-awareness disparities across countries, (ii) cross-lingual consistency, (iii) cross-modal consistency, (iv) cultural knowledge generalization, and (v) grounding validity. To ensure rigorous assessment, a Cultural Awareness Grounding Validation Module detects "shortcut learning" by checking whether the requisite cultural knowledge supports correct answers. Finally, through comparative model analysis, attention tracing, and an innovative Vision-ablated Prefix Replay (VPR) method, we probe why models diverge across languages and modalities, offering actionable insights for building culturally reliable multimodal LLMs.

LGOct 6, 2025
TopInG: Topologically Interpretable Graph Learning via Persistent Rationale Filtration

Cheng Xin, Fan Xu, Xin Ding et al.

Graph Neural Networks (GNNs) have shown remarkable success across various scientific fields, yet their adoption in critical decision-making is often hindered by a lack of interpretability. Recently, intrinsically interpretable GNNs have been studied to provide insights into model predictions by identifying rationale substructures in graphs. However, existing methods face challenges when the underlying rationale subgraphs are complex and varied. In this work, we propose TopInG: Topologically Interpretable Graph Learning, a novel topological framework that leverages persistent homology to identify persistent rationale subgraphs. TopInG employs a rationale filtration learning approach to model an autoregressive generation process of rationale subgraphs, and introduces a self-adjusted topological constraint, termed topological discrepancy, to enforce a persistent topological distinction between rationale subgraphs and irrelevant counterparts. We provide theoretical guarantees that our loss function is uniquely optimized by the ground truth under specific conditions. Extensive experiments demonstrate TopInG's effectiveness in tackling key challenges, such as handling variform rationale subgraphs, balancing predictive performance with interpretability, and mitigating spurious correlations. Results show that our approach improves upon state-of-the-art methods on both predictive accuracy and interpretation quality.

NCAug 22, 2025
Predicting Brain Morphogenesis via Physics-Transfer Learning

Yingjie Zhao, Yicheng Song, Fan Xu et al.

Brain morphology is shaped by genetic and mechanical factors and is linked to biological development and diseases. Its fractal-like features, regional anisotropy, and complex curvature distributions hinder quantitative insights in medical inspections. Recognizing that the underlying elastic instability and bifurcation share the same physics as simple geometries such as spheres and ellipses, we developed a physics-transfer learning framework to address the geometrical complexity. To overcome the challenge of data scarcity, we constructed a digital library of high-fidelity continuum mechanics modeling that both describes and predicts the developmental processes of brain growth and disease. The physics of nonlinear elasticity from simple geometries is embedded into a neural network and applied to brain models. This physics-transfer approach demonstrates remarkable performance in feature characterization and morphogenesis prediction, highlighting the pivotal role of localized deformation in dominating over the background geometry. The data-driven framework also provides a library of reduced-dimensional evolutionary representations that capture the essential physics of the highly folded cerebral cortex. Validation through medical images and domain expertise underscores the deployment of digital-twin technology in comprehending the morphological complexity of the brain.

AIJul 26, 2025
Digital Twin Channel-Enabled Online Resource Allocation for 6G: Principle, Architecture and Application

Tongjie Li, Jianhua Zhang, Li Yu et al.

Emerging applications such as holographic communication, autonomous driving, and the industrial Internet of Things impose stringent requirements on flexible, low-latency, and reliable resource allocation in 6G networks. Conventional methods, which rely on statistical modeling, have proven effective in general contexts but may fail to achieve optimal performance in specific and dynamic environments. Furthermore, acquiring real-time channel state information (CSI) typically requires excessive pilot overhead. To address these challenges, a digital twin channel (DTC)-enabled online optimization framework is proposed, in which DTC is employed to predict CSI based on environmental sensing. The predicted CSI is then utilized by lightweight game-theoretic algorithms to perform online resource allocation in a timely and efficient manner. Simulation results based on a digital replica of a realistic industrial workshop demonstrate that the proposed method achieves throughput improvements of up to 11.5\% compared with pilot-based ideal CSI schemes, validating its effectiveness for scalable, low-overhead, and environment-aware communication in future 6G networks.

BMJun 22, 2025
OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional deep learning

Zhiwei Nie, Hongyu Zhang, Hao Jiang et al.

Understanding and modeling enzyme-substrate interactions is crucial for catalytic mechanism research, enzyme engineering, and metabolic engineering. Although a large number of predictive methods have emerged, they do not incorporate prior knowledge of enzyme catalysis to rationally modulate general protein-molecule features that are misaligned with catalytic patterns. To address this issue, we introduce a two-stage progressive framework, OmniESI, for enzyme-substrate interaction prediction through conditional deep learning. By decomposing the modeling of enzyme-substrate interactions into a two-stage progressive process, OmniESI incorporates two conditional networks that respectively emphasize enzymatic reaction specificity and crucial catalysis-related interactions, facilitating a gradual feature modulation in the latent space from general protein-molecule domain to catalysis-aware domain. On top of this unified architecture, OmniESI can adapt to a variety of downstream tasks, including enzyme kinetic parameter prediction, enzyme-substrate pairing prediction, enzyme mutational effect prediction, and enzymatic active site annotation. Under the multi-perspective performance evaluation of in-distribution and out-of-distribution settings, OmniESI consistently delivered superior performance than state-of-the-art specialized methods across seven benchmarks. More importantly, the proposed conditional networks were shown to internalize the fundamental patterns of catalytic efficiency while significantly improving prediction performance, with only negligible parameter increases (0.16%), as demonstrated by ablation studies on key components. Overall, OmniESI represents a unified predictive approach for enzyme-substrate interactions, providing an effective tool for catalytic mechanism cracking and enzyme engineering with strong generalization and broad applicability.

LGMay 26, 2025
Advanced Long-term Earth System Forecasting

Hao Wu, Yuan Gao, Ruijian Gou et al.

Reliable long-term forecasting of Earth system dynamics is fundamentally limited by instabilities in current artificial intelligence (AI) models during extended autoregressive simulations. These failures often originate from inherent spectral bias, leading to inadequate representation of critical high-frequency, small-scale processes and subsequent uncontrolled error amplification. Inspired by the nested grids in numerical models used to resolve small scales, we present TritonCast. At the core of its design is a dedicated latent dynamical core, which ensures the long-term stability of the macro-evolution at a coarse scale. An outer structure then fuses this stable trend with fine-grained local details. This design effectively mitigates the spectral bias caused by cross-scale interactions. In atmospheric science, it achieves state-of-the-art accuracy on the WeatherBench 2 benchmark while demonstrating exceptional long-term stability: executing year-long autoregressive global forecasts and completing multi-year climate simulations that span the entire available $2500$-day test period without drift. In oceanography, it extends skillful eddy forecast to $120$ days and exhibits unprecedented zero-shot cross-resolution generalization. Ablation studies reveal that this performance stems from the synergistic interplay of the architecture's core components. TritonCast thus offers a promising pathway towards a new generation of trustworthy, AI-driven simulations. This significant advance has the potential to accelerate discovery in climate and Earth system science, enabling more reliable long-term forecasting and deeper insights into complex geophysical dynamics.

LGJun 2, 2024
GLADformer: A Mixed Perspective for Graph-level Anomaly Detection

Fan Xu, Nan Wang, Hao Wu et al.

Graph-Level Anomaly Detection (GLAD) aims to distinguish anomalous graphs within a graph dataset. However, current methods are constrained by their receptive fields, struggling to learn global features within the graphs. Moreover, most contemporary methods are based on spatial domain and lack exploration of spectral characteristics. In this paper, we propose a multi-perspective hybrid graph-level anomaly detector namely GLADformer, consisting of two key modules. Specifically, we first design a Graph Transformer module with global spectrum enhancement, which ensures balanced and resilient parameter distributions by fusing global features and spectral distribution characteristics. Furthermore, to uncover local anomalous attributes, we customize a band-pass spectral GNN message passing module that further enhances the model's generalization capability. Through comprehensive experiments on ten real-world datasets from multiple domains, we validate the effectiveness and robustness of GLADformer. This demonstrates that GLADformer outperforms current state-of-the-art models in graph-level anomaly detection, particularly in effectively capturing global anomaly representations and spectral characteristics.

CVMay 19, 2023
PastNet: Introducing Physical Inductive Biases for Spatio-temporal Video Prediction

Hao Wu, Fan Xu, Chong Chen et al.

In this paper, we investigate the challenge of spatio-temporal video prediction task, which involves generating future video frames based on historical spatio-temporal observation streams. Existing approaches typically utilize external information such as semantic maps to improve video prediction accuracy, which often neglect the inherent physical knowledge embedded within videos. Worse still, their high computational costs could impede their applications for high-resolution videos. To address these constraints, we introduce a novel framework called \underline{P}hysics-\underline{a}ssisted \underline{S}patio-\underline{t}emporal \underline{Net}work (PastNet) for high-quality video prediction. The core of PastNet lies in incorporating a spectral convolution operator in the Fourier domain, which efficiently introduces inductive biases from the underlying physical laws. Additionally, we employ a memory bank with the estimated intrinsic dimensionality to discretize local features during the processing of complex spatio-temporal signals, thereby reducing computational costs and facilitating efficient high-resolution video prediction. Extensive experiments on various widely-used spatio-temporal video benchmarks demonstrate the effectiveness and efficiency of the proposed PastNet compared with a range of state-of-the-art methods, particularly in high-resolution scenarios.

AIJun 1, 2021
A Unified Cognitive Learning Framework for Adapting to Dynamic Environment and Tasks

Qihui Wu, Tianchen Ruan, Fuhui Zhou et al.

Many machine learning frameworks have been proposed and used in wireless communications for realizing diverse goals. However, their incapability of adapting to the dynamic wireless environment and tasks and of self-learning limit their extensive applications and achievable performance. Inspired by the great flexibility and adaptation of primate behaviors due to the brain cognitive mechanism, a unified cognitive learning (CL) framework is proposed for the dynamic wireless environment and tasks. The mathematical framework for our proposed CL is established. Using the public and authoritative dataset, we demonstrate that our proposed CL framework has three advantages, namely, the capability of adapting to the dynamic environment and tasks, the self-learning capability and the capability of 'good money driving out bad money' by taking modulation recognition as an example. The proposed CL framework can enrich the current learning frameworks and widen the applications.

CLApr 14, 2017
An entity-driven recursive neural network model for chinese discourse coherence modeling

Fan Xu, Shujing Du, Maoxi Li et al.

Chinese discourse coherence modeling remains a challenge taskin Natural Language Processing field.Existing approaches mostlyfocus on the need for feature engineering, whichadoptthe sophisticated features to capture the logic or syntactic or semantic relationships acrosssentences within a text.In this paper, we present an entity-drivenrecursive deep modelfor the Chinese discourse coherence evaluation based on current English discourse coherenceneural network model. Specifically, to overcome the shortage of identifying the entity(nouns) overlap across sentences in the currentmodel, Our combined modelsuccessfully investigatesthe entities information into the recursive neural network freamework.Evaluation results on both sentence ordering and machine translation coherence rating task show the effectiveness of the proposed model, which significantly outperforms the existing strong baseline.

CLJan 8, 2017
Sentence-level dialects identification in the greater China region

Fan Xu, Mingwen Wang, Maoxi Li

Identifying the different varieties of the same language is more challenging than unrelated languages identification. In this paper, we propose an approach to discriminate language varieties or dialects of Mandarin Chinese for the Mainland China, Hong Kong, Taiwan, Macao, Malaysia and Singapore, a.k.a., the Greater China Region (GCR). When applied to the dialects identification of the GCR, we find that the commonly used character-level or word-level uni-gram feature is not very efficient since there exist several specific problems such as the ambiguity and context-dependent characteristic of words in the dialects of the GCR. To overcome these challenges, we use not only the general features like character-level n-gram, but also many new word-level features, including PMI-based and word alignment-based features. A series of evaluation results on both the news and open-domain dataset from Wikipedia show the effectiveness of the proposed approach.