Wahed Hemati

Manuel Stoeckel, Wahed Hemati, Alexander Mehler

The recognition of pharmacological substances, compounds and proteins is an essential preliminary work for the recognition of relations between chemicals and other biomedically relevant units. In this paper, we describe an approach to Task 1 of the PharmaCoNER Challenge, which involves the recognition of mentions of chemicals and drugs in Spanish medical texts. We train a state-of-the-art BiLSTM-CRF sequence tagger with stacked Pooled Contextualized Embeddings, word and sub-word embeddings using the open-source framework FLAIR. We present a new corpus composed of articles and papers from Spanish health science journals, termed the Spanish Health Corpus, and use it to train domain-specific embeddings which we incorporate in our model training. We achieve a result of 89.76% F1-score using pre-trained embeddings and are able to improve these results to 90.52% F1-score using specialized embeddings.

Alexander Mehler, Bernhard Jussen, Tim Geelhaar et al.

In this article we present the Frankfurt Latin Lexicon (FLL), a lexical resource for Medieval Latin that is used both for the lemmatization of Latin texts and for the post-editing of lemmatizations. We describe recent advances in the development of lemmatizers and test them against the Capitularies corpus (comprising Frankish royal edicts, mid-6th to mid-9th century), a corpus created as a reference for processing Medieval Latin. We also consider the post-correction of lemmatizations using a limited crowdsourcing process aimed at continuous review and updating of the FLL. Starting from the texts resulting from this lemmatization process, we describe the extension of the FLL by means of word embeddings, whose interactive traversing by means of SemioGraphs completes the digital enhanced hermeneutic circle. In this way, the article argues for a more comprehensive understanding of lemmatization, encompassing classical machine learning as well as intellectual post-corrections and, in particular, human computation in the form of interpretation processes based on graph representations of the underlying lexical resources.

Alexander Mehler, Rüdiger Gleim, Regina Gaitsch et al.

Are nearby places (e.g. cities) described by related words? In this article we transfer this research question in the field of lexical encoding of geographic information onto the level of intertextuality. To this end, we explore Volunteered Geographic Information (VGI) to model texts addressing places at the level of cities or regions with the help of so-called topic networks. This is done to examine how language encodes and networks geographic information on the aboutness level of texts. Our hypothesis is that the networked thematizations of places are similar - regardless of their distances and the underlying communities of authors. To investigate this we introduce Multiplex Topic Networks (MTN), which we automatically derive from Linguistic Multilayer Networks (LMN) as a novel model, especially of thematic networking in text corpora. Our study shows a Zipfian organization of the thematic universe in which geographical places (especially cities) are located in online communication. We interpret this finding in the context of cognitive maps, a notion which we extend by so-called thematic maps. According to our interpretation of this finding, the organization of thematic maps as part of cognitive maps results from a tendency of authors to generate shareable content that ensures the continued existence of the underlying media. We test our hypothesis by example of special wikis and extracts of Wikipedia. In this way we come to the conclusion: Places, whether close to each other or not, are located in neighboring places that span similar subnetworks in the topic universe.