Muhtasim Noor Alif

Ehtesamul Azim, Muhtasim Noor Alif, Tae Hyun Hwang et al.

Single-cell RNA sequencing (scRNA-seq) profiles large numbers of cells but loses spatial context, whereas spatial transcriptomics (ST) preserves partial spatial structure at lower resolution. Most existing integration methods either deconvolve spot mixtures or map cells onto a measured spot lattice, which ties reconstructions to a fixed grid and slide-specific coordinate systems, a limitation that is especially problematic in unpaired settings. We propose GEARS, a geometry-first framework that reconstructs an intrinsic single-cell spatial geometry guided by ST, without relying on cell-type labels, histological images, or cell-to-spot assignment. GEARS first learns a domain-invariant expression encoder that aligns ST spots and dissociated cells, and then trains a permutation-equivariant generator with a diffusion-based refiner with EDM-style preconditioning to generate local spatial geometries under pose-invariant supervision derived from ST coordinates. At inference, GEARS reconstructs geometry on many overlapping subsets of scRNA-seq cells, aggregates predicted pairwise distances across subsets, and solves a global distance-geometry problem to obtain canonical two-dimensional coordinates and a dense distance matrix. Extensive quantitative and qualitative experiments, including cross-section generalization, show that GEARS consistently improves global distance preservation, local neighborhood fidelity, and spatial distribution alignment compared to strong spatial mapping and deconvolution baselines.

Rittik Basak Utsha, Muhtasim Noor Alif, Yeasir Rayhan et al.

Crime prediction is a widely studied research problem due to its importance in ensuring safety of city dwellers. Starting from statistical and classical machine learning based crime prediction methods, in recent years researchers have focused on exploiting deep learning based models for crime prediction. Deep learning based crime prediction models use complex architectures to capture the latent features in the crime data, and outperform the statistical and classical machine learning based crime prediction methods. However, there is a significant research gap in existing research on the applicability of different models in different real-life scenarios as no longitudinal study exists comparing all these approaches in a unified setting. In this paper, we conduct a comprehensive experimental evaluation of all major state-of-the-art deep learning based crime prediction models. Our evaluation provides several key insights on the pros and cons of these models, which enables us to select the most suitable models for different application scenarios. Based on the findings, we further recommend certain design practices that should be taken into account while building future deep learning based crime prediction models.