Fangqiang Xu

2papers

2 Papers

IVJul 7, 2024
Dynamic Position Transformation and Boundary Refinement Network for Left Atrial Segmentation

Fangqiang Xu, Wenxuan Tu, Fan Feng et al.

Left atrial (LA) segmentation is a crucial technique for irregular heartbeat (i.e., atrial fibrillation) diagnosis. Most current methods for LA segmentation strictly assume that the input data is acquired using object-oriented center cropping, while this assumption may not always hold in practice due to the high cost of manual object annotation. Random cropping is a straightforward data pre-processing approach. However, it 1) introduces significant irregularities and incompleteness in the input data and 2) disrupts the coherence and continuity of object boundary regions. To tackle these issues, we propose a novel Dynamic Position transformation and Boundary refinement Network (DPBNet). The core idea is to dynamically adjust the relative position of irregular targets to construct their contextual relationships and prioritize difficult boundary pixels to enhance foreground-background distinction. Specifically, we design a shuffle-then-reorder attention module to adjust the position of disrupted objects in the latent space using dynamic generation ratios, such that the vital dependencies among these random cropping targets could be well captured and preserved. Moreover, to improve the accuracy of boundary localization, we introduce a dual fine-grained boundary loss with scenario-adaptive weights to handle the ambiguity of the dual boundary at a fine-grained level, promoting the clarity and continuity of the obtained results. Extensive experimental results on benchmark dataset have demonstrated that DPBNet consistently outperforms existing state-of-the-art methods.

IVJul 26, 2024
How good nnU-Net for Segmenting Cardiac MRI: A Comprehensive Evaluation

Malitha Gunawardhana, Fangqiang Xu, Jichao Zhao

Cardiac segmentation is a critical task in medical imaging, essential for detailed analysis of heart structures, which is crucial for diagnosing and treating various cardiovascular diseases. With the advent of deep learning, automated segmentation techniques have demonstrated remarkable progress, achieving high accuracy and efficiency compared to traditional manual methods. Among these techniques, the nnU-Net framework stands out as a robust and versatile tool for medical image segmentation. In this study, we evaluate the performance of nnU-Net in segmenting cardiac magnetic resonance images (MRIs). Utilizing five cardiac segmentation datasets, we employ various nnU-Net configurations, including 2D, 3D full resolution, 3D low resolution, 3D cascade, and ensemble models. Our study benchmarks the capabilities of these configurations and examines the necessity of developing new models for specific cardiac segmentation tasks.