Juergen Czarske

2papers

2 Papers

OPTICSJul 26, 2024
Diffusion-driven lensless fiber endomicroscopic quantitative phase imaging towards digital pathology

Zhaoqing Chen, Jiawei Sun, Xibin Yang et al.

Lensless fiber endomicroscope is an emerging tool for in-vivo microscopic imaging, where quantitative phase imaging (QPI) can be utilized as a label-free method to enhance image contrast. However, existing single-shot phase reconstruction methods through lensless fiber endomicroscope typically perform well on simple images but struggle with complex microscopic structures. Here, we propose a speckle-conditioned diffusion model (SpecDiffusion), which reconstructs phase images directly from speckles captured at the detection side of a multi-core fiber (MCF). Unlike conventional neural networks, SpecDiffusion employs iterative phase denoising steps for speckle-driven phase reconstruction. The iteration scheme allows SpecDiffusion to break down the phase reconstruction process into multiple steps, gradually building up to the final phase image. This attribute alleviates the computation challenge at each step and enables the reconstruction of rich details in complex microscopic images. To validate its efficacy, we build an optical system to capture speckles from MCF and construct a dataset consisting of 100,000 paired images. SpecDiffusion provides high-fidelity phase reconstruction results and shows powerful generalization capacity for unseen objects, such as test charts and biological tissues, reducing the average mean absolute error of the reconstructed tissue images by 7 times. Furthermore, the reconstructed tissue images using SpecDiffusion shows higher accuracy in zero-shot cell segmentation tasks compared to the conventional method, demonstrating the potential for further cell morphology analysis through the learning-based lensless fiber endomicroscope. SpecDiffusion offers a precise and generalized method to phase reconstruction through scattering media, including MCFs, opening new perspective in lensless fiber endomicroscopic imaging.

OPTICSNov 24, 2021
Lensless multicore-fiber microendoscope for real-time tailored light field generation with phase encoder neural network (CoreNet)

Jiawei Sun, Jiachen Wu, Nektarios Koukourakis et al.

The generation of tailored light with multi-core fiber (MCF) lensless microendoscopes is widely used in biomedicine. However, the computer-generated holograms (CGHs) used for such applications are typically generated by iterative algorithms, which demand high computation effort, limiting advanced applications like in vivo optogenetic stimulation and fiber-optic cell manipulation. The random and discrete distribution of the fiber cores induces strong spatial aliasing to the CGHs, hence, an approach that can rapidly generate tailored CGHs for MCFs is highly demanded. We demonstrate a novel phase encoder deep neural network (CoreNet), which can generate accurate tailored CGHs for MCFs at a near video-rate. Simulations show that CoreNet can speed up the computation time by two magnitudes and increase the fidelity of the generated light field compared to the conventional CGH techniques. For the first time, real-time generated tailored CGHs are on-the-fly loaded to the phase-only SLM for dynamic light fields generation through the MCF microendoscope in experiments. This paves the avenue for real-time cell rotation and several further applications that require real-time high-fidelity light delivery in biomedicine.