CLDec 21, 2022Code
Language Models as Inductive ReasonersZonglin Yang, Li Dong, Xinya Du et al. · microsoft-research
Inductive reasoning is a core component of human intelligence. In the past research of inductive reasoning within computer science, formal language is used as representations of knowledge (facts and rules, more specifically). However, formal language can cause systematic problems for inductive reasoning such as disability of handling raw input such as natural language, sensitiveness to mislabeled data, and incapacity to handle ambiguous input. To this end, we propose a new paradigm (task) for inductive reasoning, which is to induce natural language rules from natural language facts, and create a dataset termed DEER containing 1.2k rule-fact pairs for the task, where rules and facts are written in natural language. New automatic metrics are also proposed and analysed for the evaluation of this task. With DEER, we investigate a modern approach for inductive reasoning where we use natural language as representation for knowledge instead of formal language and use pretrained language models as ''reasoners''. Moreover, we provide the first and comprehensive analysis of how well pretrained language models can induce natural language rules from natural language facts. We also propose a new framework drawing insights from philosophy literature for this task, which we show in the experiment section that surpasses baselines in both automatic and human evaluations. We discuss about our future perspectives for inductive reasoning in Section 7. Dataset and code are available at https://github.com/ZonglinY/Inductive_Reasoning.
CLSep 6, 2023
Large Language Models for Automated Open-domain Scientific Hypotheses DiscoveryZonglin Yang, Xinya Du, Junxian Li et al.
Hypothetical induction is recognized as the main reasoning type when scientists make observations about the world and try to propose hypotheses to explain those observations. Past research on hypothetical induction is under a constrained setting: (1) the observation annotations in the dataset are carefully manually handpicked sentences (resulting in a close-domain setting); and (2) the ground truth hypotheses are mostly commonsense knowledge, making the task less challenging. In this work, we tackle these problems by proposing the first dataset for social science academic hypotheses discovery, with the final goal to create systems that automatically generate valid, novel, and helpful scientific hypotheses, given only a pile of raw web corpus. Unlike previous settings, the new dataset requires (1) using open-domain data (raw web corpus) as observations; and (2) proposing hypotheses even new to humanity. A multi-module framework is developed for the task, including three different feedback mechanisms to boost performance, which exhibits superior performance in terms of both GPT-4 based and expert-based evaluation. To the best of our knowledge, this is the first work showing that LLMs are able to generate novel (''not existing in literature'') and valid (''reflecting reality'') scientific hypotheses.
CLOct 22, 2023
A Survey on Semantic Processing TechniquesRui Mao, Kai He, Xulang Zhang et al.
Semantic processing is a fundamental research domain in computational linguistics. In the era of powerful pre-trained language models and large language models, the advancement of research in this domain appears to be decelerating. However, the study of semantics is multi-dimensional in linguistics. The research depth and breadth of computational semantic processing can be largely improved with new technologies. In this survey, we analyzed five semantic processing tasks, e.g., word sense disambiguation, anaphora resolution, named entity recognition, concept extraction, and subjectivity detection. We study relevant theoretical research in these fields, advanced methods, and downstream applications. We connect the surveyed tasks with downstream applications because this may inspire future scholars to fuse these low-level semantic processing tasks with high-level natural language processing tasks. The review of theoretical research may also inspire new tasks and technologies in the semantic processing domain. Finally, we compare the different semantic processing techniques and summarize their technical trends, application trends, and future directions.
CLMar 21, 2023
Logical Reasoning over Natural Language as Knowledge Representation: A SurveyZonglin Yang, Xinya Du, Rui Mao et al.
Logical reasoning is central to human cognition and intelligence. It includes deductive, inductive, and abductive reasoning. Past research of logical reasoning within AI uses formal language as knowledge representation and symbolic reasoners. However, reasoning with formal language has proved challenging (e.g., brittleness and knowledge-acquisition bottleneck). This paper provides a comprehensive overview on a new paradigm of logical reasoning, which uses natural language as knowledge representation and pretrained language models as reasoners, including philosophical definition and categorization of logical reasoning, advantages of the new paradigm, benchmarks and methods, challenges of the new paradigm, possible future directions, and relation to related NLP fields. This new paradigm is promising since it not only alleviates many challenges of formal representation but also has advantages over end-to-end neural methods. This survey focus on transformer-based LLMs explicitly working on deductive, inductive, and abductive reasoning over English representation.
27.5CLMay 28
MOOSE-Copilot: A Web-Based Interactive Assistant for Unified Exploratory and Fine-Grained Scientific Hypothesis DiscoveryHongran An, Zonglin Yang
Large language models (LLMs) show remarkable potential in scientific hypothesis discovery. However, existing approaches face two critical limitations: they treat divergent exploratory ideation and convergent fine-grained refinement as isolated tasks, and they operate autonomously with little to no human guidance. We present MOOSE-Copilot, the first unified framework to bridge this abstraction gap through a formalized human-AI interaction (HAII) protocol. Our system empowers scientists to steer the generative process via three explicit signals: initial blueprints, inter-stage routing, and regenerative feedback. Quantitative evaluations demonstrate that injecting these structured expert signals significantly outperforms purely autonomous baselines, establishing a performance ceiling under oracle guidance. Furthermore, to democratize this paradigm, we develop an intuitive web-based interface featuring interactive tree visualization. This explicitly eliminates the steep learning curve of complex command-line agentic tools, empowering interdisciplinary researchers to directly leverage, visually orchestrate, and accelerate end-to-end scientific breakthroughs.
93.2AIMay 11Code
SciIntegrity-Bench: A Benchmark for Evaluating Academic Integrity in AI Scientist SystemsZonglin Yang, Xingtong Liu, Xinyan Xu
AI scientist systems are increasingly deployed for autonomous research, yet their academic integrity has never been systematically evaluated. We introduce SCIINTEGRITY-BENCH, the first benchmark designed around a dilemmatic evaluation paradigm: each of its 33 scenarios across 11 trap categories is constructed so that honest acknowledgment of failure is the only correct response, while task completion requires misconduct. Across 231 evaluation runs spanning 7 state-of-the-art LLMs, the overall integrity problem rate reaches 34.2%, and no model achieves zero failures. Most strikingly, across missing-data scenarios, all seven models generate synthetic data rather than acknowledging infeasibility, differing only in whether they disclose the substitution. A further prompt ablation study separates two drivers: removing explicit completion pressure sharply reduces undisclosed fabrication from 20.6% to 3.2%, while the underlying synthesis rate remains unchanged, revealing an intrinsic completion bias that persists independent of prompt-level instructions. These findings point to the absence of honest refusal as a trained disposition as the primary driver of observed failures. We release SCIINTEGRITY-BENCH at https://github.com/liuxingtong/Sci-Integrity-Bench.
CLJan 8, 2025Code
LLM4SR: A Survey on Large Language Models for Scientific ResearchZiming Luo, Zonglin Yang, Zexin Xu et al.
In recent years, the rapid advancement of Large Language Models (LLMs) has transformed the landscape of scientific research, offering unprecedented support across various stages of the research cycle. This paper presents the first systematic survey dedicated to exploring how LLMs are revolutionizing the scientific research process. We analyze the unique roles LLMs play across four critical stages of research: hypothesis discovery, experiment planning and implementation, scientific writing, and peer reviewing. Our review comprehensively showcases the task-specific methodologies and evaluation benchmarks. By identifying current challenges and proposing future research directions, this survey not only highlights the transformative potential of LLMs, but also aims to inspire and guide researchers and practitioners in leveraging LLMs to advance scientific inquiry. Resources are available at the following repository: https://github.com/du-nlp-lab/LLM4SR
CLFeb 27
Full-Stack Domain Enhancement for Combustion LLMs: Construction and OptimizationQuanjia Xiao, Weimin Ouyang, Zonglin Yang et al.
Large language models (LLMs) in the direction of task adaptation and capability enhancement for professional fields demonstrate significant application potential. Nevertheless, for complex physical systems such as combustion science, general-purpose LLMs often generate severe hallucinations due to insufficient domain knowledge and the inability to adhere to physical conservation laws. To address this issue, we propose the first full-stack domain-enhanced LLM workflow tailored for the field of combustion science, which integrates automated domain corpus construction, incremental pre-training, instruction fine-tuning, and verifiable reward-based reinforcement learning. This workflow ensures that the model truly internalizes physical laws rather than merely learning textual statistical patterns. We also release FlameBench, a standardized evaluation benchmark specifically designed for complex reasoning tasks in combustion science. Experimental results demonstrate that the model developed in this work significantly outperforms state-of-the-art general-purpose closed-source models and traditional retrieval-augmented generation methods on combustion science reasoning tasks. This work lays a solid technical and resource foundation for the subsequent development of domain-specific scientific research agents with reliable scientific reasoning capabilities.
CLJul 19, 2025Code
MiroMind-M1: An Open-Source Advancement in Mathematical Reasoning via Context-Aware Multi-Stage Policy OptimizationXingxuan Li, Yao Xiao, Dianwen Ng et al.
Large language models have recently evolved from fluent text generation to advanced reasoning across diverse domains, giving rise to reasoning language models. Among these domains, mathematical reasoning serves as a representative benchmark as it requires precise multi-step logic and abstract reasoning, which can be generalized to other tasks. While closed-source RLMs such as GPT-o3 demonstrate impressive reasoning capabilities, their proprietary nature limits transparency and reproducibility. Although many open-source projects aim to close this gap, most of them lack sufficient openness by omitting critical resources such as datasets and detailed training configurations, which hinders reproducibility. To contribute toward greater transparency in RLM development, we introduce the MiroMind-M1 series, a set of fully open-source RLMs built on the Qwen-2.5 backbone that match or exceed the performance of existing open-source RLMs. Specifically, our models are trained in two stages: SFT on a carefully curated corpus of 719K math-reasoning problems with verified CoT trajectories, followed by RLVR on 62K challenging and verifiable problems. To enhance the robustness and efficiency of the RLVR process, we introduce Context-Aware Multi-Stage Policy Optimization, an algorithm that integrates length-progressive training with an adaptive repetition penalty to encourage context-aware RL training. Our model achieves state-of-the-art or competitive performance and superior token efficiency among Qwen-2.5-based open-source 7B and 32B models on the AIME24, AIME25, and MATH benchmarks. To facilitate reproducibility, we release the complete stack: models (MiroMind-M1-SFT-7B, MiroMind-M1-RL-7B, MiroMind-M1-RL-32B); datasets (MiroMind-M1-SFT-719K, MiroMind-M1-RL-62K); and all training and evaluation configurations. We hope these resources will support further research and foster community advancement.
81.6CVApr 3
PolyReal: A Benchmark for Real-World Polymer Science WorkflowsWanhao Liu, Weida Wang, Jiaqing Xie et al.
Multimodal Large Language Models (MLLMs) excel in general domains but struggle with complex, real-world science. We posit that polymer science, an interdisciplinary field spanning chemistry, physics, biology, and engineering, is an ideal high-stakes testbed due to its diverse multimodal data. Yet, existing benchmarks related to polymer science largely overlook real-world workflows, limiting their practical utility and failing to systematically evaluate MLLMs across the full, practice-grounded lifecycle of experimentation. We introduce PolyReal, a novel multimodal benchmark grounded in real-world scientific practices to evaluate MLLMs on the full lifecycle of polymer experimentation. It covers five critical capabilities: (1) foundational knowledge application; (2) lab safety analysis; (3) experiment mechanism reasoning; (4) raw data extraction; and (5) performance & application exploration. Our evaluation of leading MLLMs on PolyReal reveals a capability imbalance. While models perform well on knowledge-intensive reasoning (e.g., Experiment Mechanism Reasoning), they drop sharply on practice-based tasks (e.g., Lab Safety Analysis and Raw Data Extraction). This exposes a severe gap between abstract scientific knowledge and its practical, context-dependent application, showing that these real-world tasks remain challenging for MLLMs. Thus, PolyReal helps address this evaluation gap and provides a practical benchmark for assessing AI systems in real-world scientific workflows.
82.6OCMay 12
Efficient and provably convergent end-to-end training of deep neural networks with linear constraintsZonglin Yang, Zhexuan Gu, Yancheng Yuan
Training a deep neural network with the outputs of selected layers satisfying linear constraints is required in many contemporary data-driven applications. While this can be achieved by incorporating projection layers into the neural network, its end-to-end training remains challenging due to the lack of rigorous theory and efficient algorithms for backpropagation. A key difficulty in developing the theory and efficient algorithms for backpropagation arose from the nonsmoothness of the solution mapping of the projection layer. To address this bottleneck, we introduce an efficiently computable HS-Jacobian to the projection layer. Importantly, we prove that the HS-Jacobian is a conservative mapping for the projection operator onto the polyhedral set, enabling its seamless integration into the nonsmooth automatic differentiation framework for backpropagation. Therefore, many efficient algorithms, such as Adam, can be applied for end-to-end training of deep neural networks with linear constraints. Particularly, we establish convergence guarantees of the HS-Jacobian based Adam algorithm for training linearly constrained deep neural networks. Extensive experiment results on several important applications, including finance, computer vision, and network architecture design, demonstrate the superior performance of our method compared to other existing popular methods.
30.1CVMay 10
Cross-Source Supervision for Bone Infection Segmentation in Dual-Modality PET-CTZonglin Yang, Xiaolei Diao, Jishizhan Chen et al.
Early and accurate diagnosis and lesion localization of bone infections are crucial for clinical treatment. PET-CT integrates anatomical information from CT with metabolic information from PET, making it an important imaging modality for diagnosing bone infections. However, accurate lesion segmentation remains challenging due to indistinct lesion boundaries and inconsistencies in annotations generated by different experts or automated systems. In this work, we investigate multimodal segmentation of bone infections under annotation discrepancy. We develop a bimodal end-to-end segmentation framework that integrates PET metabolic signals and CT bone-window anatomy through an early-fusion multimodal representation.To mitigate performance inflation caused by inter-slice correlation in small datasets, this study discards traditional two-dimensional evaluation methods and implements a rigorous patient-level 3D volumetric evaluation and cross-validation. Furthermore, instead of forcing a singular consensus, we propose a decoupled dual-source learning framework where parallel models are trained on independent expert annotations driven by high-sensitivity and high-specificity clinical intents. Experimental results objectively report performance variations at the patient level (Mean + SD and Mean - SD), demonstrating the effectiveness of multimodal PET-CT fusion. The cross-evaluation matrix quantitatively reveals how models successfully internalize distinct expert diagnostic philosophies, providing a robust, diversity-preserving paradigm for clinical AI deployment in bone infection segmentation.
30.4AIMar 21
From 50% to Mastery in 3 Days: A Low-Resource SOP for Localizing Graduate-Level AI Tutors via Shadow-RAGZonglin Yang, J. -H. Xie, Lining Zhang et al.
Deploying high-fidelity AI tutors in schools is often blocked by the Resource Curse -- the need for expensive cloud GPUs and massive data engineering. In this practitioner report, we present a replicable Standard Operating Procedure that breaks this barrier. Using a Vision-Language Model data cleaning strategy and a novel Shadow-RAG architecture, we localized a graduate-level Applied Mathematics tutor using only 3 person-days of non-expert labor and open-weights 32B models deployable on a single consumer-grade GPU. Our pilot study on a full graduate-level final exam reveals a striking emergence phenomenon: while both zero-shot baselines and standard retrieval stagnate around 50-60% accuracy across model generations, the Shadow Agent, which provides structured reasoning guidance, triggers a massive capability surge in newer 32B models, boosting performance from 74% (Naive RAG) to mastery level (90%). In contrast, older models see only modest gains (~10%). This suggests that such guidance is the key to unlocking the latent power of modern small language models. This work offers a cost-effective, scientifically grounded blueprint for ubiquitous AI education.
LGMar 4
MOOSE-Star: Unlocking Tractable Training for Scientific Discovery by Breaking the Complexity BarrierZonglin Yang, Lidong Bing
While large language models (LLMs) show promise in scientific discovery, existing research focuses on inference or feedback-driven training, leaving the direct modeling of the generative reasoning process, $P(\text{hypothesis}|\text{background})$ ($P(h|b)$), unexplored. We demonstrate that directly training $P(h|b)$ is mathematically intractable due to the combinatorial complexity ($O(N^k)$) inherent in retrieving and composing inspirations from a vast knowledge base. To break this barrier, we introduce MOOSE-Star, a unified framework enabling tractable training and scalable inference. In the best case, MOOSE-Star reduces complexity from exponential to logarithmic ($O(\log N)$) by (1) training on decomposed subtasks derived from the probabilistic equation of discovery, (2) employing motivation-guided hierarchical search to enable logarithmic retrieval and prune irrelevant subspaces, and (3) utilizing bounded composition for robustness against retrieval noise. To facilitate this, we release TOMATO-Star, a dataset of 108,717 decomposed papers (38,400 GPU hours) for training. Furthermore, we show that while brute-force sampling hits a ''complexity wall,'' MOOSE-Star exhibits continuous test-time scaling.
CVNov 27, 2024
Critic-V: VLM Critics Help Catch VLM Errors in Multimodal ReasoningDi Zhang, Junxian Li, Jingdi Lei et al.
Vision-language models (VLMs) have shown remarkable advancements in multimodal reasoning tasks. However, they still often generate inaccurate or irrelevant responses due to issues like hallucinated image understandings or unrefined reasoning paths. To address these challenges, we introduce Critic-V, a novel framework inspired by the Actor-Critic paradigm to boost the reasoning capability of VLMs. This framework decouples the reasoning process and critic process by integrating two independent components: the Reasoner, which generates reasoning paths based on visual and textual inputs, and the Critic, which provides constructive critique to refine these paths. In this approach, the Reasoner generates reasoning responses according to text prompts, which can evolve iteratively as a policy based on feedback from the Critic. This interaction process was theoretically driven by a reinforcement learning framework where the Critic offers natural language critiques instead of scalar rewards, enabling more nuanced feedback to boost the Reasoner's capability on complex reasoning tasks. The Critic model is trained using Direct Preference Optimization (DPO), leveraging a preference dataset of critiques ranked by Rule-based Reward~(RBR) to enhance its critic capabilities. Evaluation results show that the Critic-V framework significantly outperforms existing methods, including GPT-4V, on 5 out of 8 benchmarks, especially regarding reasoning accuracy and efficiency. Combining a dynamic text-based policy for the Reasoner and constructive feedback from the preference-optimized Critic enables a more reliable and context-sensitive multimodal reasoning process. Our approach provides a promising solution to enhance the reliability of VLMs, improving their performance in real-world reasoning-heavy multimodal applications such as autonomous driving and embodied intelligence.
CLMar 27, 2025
ResearchBench: Benchmarking LLMs in Scientific Discovery via Inspiration-Based Task DecompositionYujie Liu, Zonglin Yang, Tong Xie et al.
Large language models (LLMs) have demonstrated potential in assisting scientific research, yet their ability to discover high-quality research hypotheses remains unexamined due to the lack of a dedicated benchmark. To address this gap, we introduce the first large-scale benchmark for evaluating LLMs with a near-sufficient set of sub-tasks of scientific discovery: inspiration retrieval, hypothesis composition, and hypothesis ranking. We develop an automated framework that extracts critical components - research questions, background surveys, inspirations, and hypotheses - from scientific papers across 12 disciplines, with expert validation confirming its accuracy. To prevent data contamination, we focus exclusively on papers published in 2024, ensuring minimal overlap with LLM pretraining data. Our evaluation reveals that LLMs perform well in retrieving inspirations, an out-of-distribution task, suggesting their ability to surface novel knowledge associations. This positions LLMs as "research hypothesis mines", capable of facilitating automated scientific discovery by generating innovative hypotheses at scale with minimal human intervention.
AIDec 22, 2023
Adaptive Reconvergence-driven AIG Rewriting via Strategy LearningLiwei Ni, Zonglin Yang, Jiaxi Zhang et al.
Rewriting is a common procedure in logic synthesis aimed at improving the performance, power, and area (PPA) of circuits. The traditional reconvergence-driven And-Inverter Graph (AIG) rewriting method focuses solely on optimizing the reconvergence cone through Boolean algebra minimization. However, there exist opportunities to incorporate other node-rewriting algorithms that are better suited for specific cones. In this paper, we propose an adaptive reconvergence-driven AIG rewriting algorithm that combines two key techniques: multi-strategy-based AIG rewriting and strategy learning-based algorithm selection. The multi-strategy-based rewriting method expands upon the traditional approach by incorporating support for multi-node-rewriting algorithms, thus expanding the optimization space. Additionally, the strategy learning-based algorithm selection method determines the most suitable node-rewriting algorithm for a given cone. Experimental results demonstrate that our proposed method yields a significant average improvement of 5.567\% in size and 5.327\% in depth.
CLMay 25, 2025
MOOSE-Chem2: Exploring LLM Limits in Fine-Grained Scientific Hypothesis Discovery via Hierarchical SearchZonglin Yang, Wanhao Liu, Ben Gao et al.
Large language models (LLMs) have shown promise in automating scientific hypothesis generation, yet existing approaches primarily yield coarse-grained hypotheses lacking critical methodological and experimental details. We introduce and formally define the new task of fine-grained scientific hypothesis discovery, which entails generating detailed, experimentally actionable hypotheses from coarse initial research directions. We frame this as a combinatorial optimization problem and investigate the upper limits of LLMs' capacity to solve it when maximally leveraged. Specifically, we explore four foundational questions: (1) how to best harness an LLM's internal heuristics to formulate the fine-grained hypothesis it itself would judge as the most promising among all the possible hypotheses it might generate, based on its own internal scoring-thus defining a latent reward landscape over the hypothesis space; (2) whether such LLM-judged better hypotheses exhibit stronger alignment with ground-truth hypotheses; (3) whether shaping the reward landscape using an ensemble of diverse LLMs of similar capacity yields better outcomes than defining it with repeated instances of the strongest LLM among them; and (4) whether an ensemble of identical LLMs provides a more reliable reward landscape than a single LLM. To address these questions, we propose a hierarchical search method that incrementally proposes and integrates details into the hypothesis, progressing from general concepts to specific experimental configurations. We show that this hierarchical process smooths the reward landscape and enables more effective optimization. Empirical evaluations on a new benchmark of expert-annotated fine-grained hypotheses from recent literature show that our method consistently outperforms strong baselines.
LGMay 29, 2025
Accelerating RLHF Training with Reward Variance IncreaseZonglin Yang, Zhexuan Gu, Houduo Qi et al.
Reinforcement learning from human feedback (RLHF) is an essential technique for ensuring that large language models (LLMs) are aligned with human values and preferences during the post-training phase. As an effective RLHF approach, group relative policy optimization (GRPO) has demonstrated success in many LLM-based applications. However, efficient GRPO-based RLHF training remains a challenge. Recent studies reveal that a higher reward variance of the initial policy model leads to faster RLHF training. Inspired by this finding, we propose a practical reward adjustment model to accelerate RLHF training by provably increasing the reward variance and preserving the relative preferences and reward expectation. Our reward adjustment method inherently poses a nonconvex optimization problem, which is NP-hard to solve in general. To overcome the computational challenges, we design a novel $O(n \log n)$ algorithm to find a global solution of the nonconvex reward adjustment model by explicitly characterizing the extreme points of the feasible set. As an important application, we naturally integrate this reward adjustment model into the GRPO algorithm, leading to a more efficient GRPO with reward variance increase (GRPOVI) algorithm for RLHF training. As an interesting byproduct, we provide an indirect explanation for the empirical effectiveness of GRPO with rule-based reward for RLHF training, as demonstrated in DeepSeek-R1. Experiment results demonstrate that the GRPOVI algorithm can significantly improve the RLHF training efficiency compared to the original GRPO algorithm.
CLMay 30, 2025
Harnessing Large Language Models for Scientific Novelty DetectionYan Liu, Zonglin Yang, Soujanya Poria et al.
In an era of exponential scientific growth, identifying novel research ideas is crucial and challenging in academia. Despite potential, the lack of an appropriate benchmark dataset hinders the research of novelty detection. More importantly, simply adopting existing NLP technologies, e.g., retrieving and then cross-checking, is not a one-size-fits-all solution due to the gap between textual similarity and idea conception. In this paper, we propose to harness large language models (LLMs) for scientific novelty detection (ND), associated with two new datasets in marketing and NLP domains. To construct the considerate datasets for ND, we propose to extract closure sets of papers based on their relationship, and then summarize their main ideas based on LLMs. To capture idea conception, we propose to train a lightweight retriever by distilling the idea-level knowledge from LLMs to align ideas with similar conception, enabling efficient and accurate idea retrieval for LLM novelty detection. Experiments show our method consistently outperforms others on the proposed benchmark datasets for idea retrieval and ND tasks. Codes and data are available at https://anonymous.4open.science/r/NoveltyDetection-10FB/.
CLMay 23, 2025
MOOSE-Chem3: Toward Experiment-Guided Hypothesis Ranking via Simulated Experimental FeedbackWanhao Liu, Zonglin Yang, Jue Wang et al.
Hypothesis ranking is vital for automated scientific discovery, especially in cost-intensive, throughput-limited natural science domains. Current methods focus on pre-experiment ranking, relying solely on language model reasoning without empirical feedback. We introduce experiment-guided ranking, which prioritizes hypotheses based on feedback from prior tests. Due to the impracticality of real experiments, we propose a simulator grounded in domain-specific concepts that models hypothesis performance as a function of similarity to a hidden ground truth, perturbed by noise. Validated against 124 hypotheses with experimentally reported outcomes, the simulator approximates real results with consistent trend alignment. Although deviations exist, they mimic wet-lab noise, promoting more robust ranking strategies. We frame experiment-guided ranking as a sequential decision-making problem and propose an in-context reinforcement learning (ICRL) framework. Our LLM-based policy decomposes hypotheses into functional elements, clusters them by mechanistic roles, and prioritizes recombinations based on feedback. Experiments show our approach significantly outperforms pre-experiment baselines and strong ablations. Our toolkit, comprising the simulator and ICRL framework, enables systematic research on experiment-guided ranking, with the policy serving as a strong proof of concept.
NEJun 30, 2025
Optimization of Low-Latency Spiking Neural Networks Utilizing Historical Dynamics of Refractory PeriodsLiying Tao, Zonglin Yang, Delong Shang
The refractory period controls neuron spike firing rate, crucial for network stability and noise resistance. With advancements in spiking neural network (SNN) training methods, low-latency SNN applications have expanded. In low-latency SNNs, shorter simulation steps render traditional refractory mechanisms, which rely on empirical distributions or spike firing rates, less effective. However, omitting the refractory period amplifies the risk of neuron over-activation and reduces the system's robustness to noise. To address this challenge, we propose a historical dynamic refractory period (HDRP) model that leverages membrane potential derivative with historical refractory periods to estimate an initial refractory period and dynamically adjust its duration. Additionally, we propose a threshold-dependent refractory kernel to mitigate excessive neuron state accumulation. Our approach retains the binary characteristics of SNNs while enhancing both noise resistance and overall performance. Experimental results show that HDRP-SNN significantly reduces redundant spikes compared to traditional SNNs, and achieves state-of-the-art (SOTA) accuracy both on static datasets and neuromorphic datasets. Moreover, HDRP-SNN outperforms artificial neural networks (ANNs) and traditional SNNs in noise resistance, highlighting the crucial role of the HDRP mechanism in enhancing the performance of low-latency SNNs.
CVJun 5, 2024
ZeroPur: Succinct Training-Free Adversarial PurificationErhu Liu, Zonglin Yang, Bo Liu et al.
Adversarial purification is a kind of defense technique that can defend against various unseen adversarial attacks without modifying the victim classifier. Existing methods often depend on external generative models or cooperation between auxiliary functions and victim classifiers. However, retraining generative models, auxiliary functions, or victim classifiers relies on the domain of the fine-tuned dataset and is computation-consuming. In this work, we suppose that adversarial images are outliers of the natural image manifold, and the purification process can be considered as returning them to this manifold. Following this assumption, we present a simple adversarial purification method without further training to purify adversarial images, called ZeroPur. ZeroPur contains two steps: given an adversarial example, Guided Shift obtains the shifted embedding of the adversarial example by the guidance of its blurred counterparts; after that, Adaptive Projection constructs a directional vector by this shifted embedding to provide momentum, projecting adversarial images onto the manifold adaptively. ZeroPur is independent of external models and requires no retraining of victim classifiers or auxiliary functions, relying solely on victim classifiers themselves to achieve purification. Extensive experiments on three datasets (CIFAR-10, CIFAR-100, and ImageNet-1K) using various classifier architectures (ResNet, WideResNet) demonstrate that our method achieves state-of-the-art robust performance. The code will be publicly available.
LGMay 22, 2023
Finding the Pillars of Strength for Multi-Head AttentionJinjie Ni, Rui Mao, Zonglin Yang et al.
Recent studies have revealed some issues of Multi-Head Attention (MHA), e.g., redundancy and over-parameterization. Specifically, the heads of MHA were originally designed to attend to information from different representation subspaces, whereas prior studies found that some attention heads likely learn similar features and can be pruned without harming performance. Inspired by the minimum-redundancy feature selection, we assume that focusing on the most representative and distinctive features with minimum resources can mitigate the above issues and lead to more effective and efficient MHAs. In particular, we propose Grouped Head Attention, trained with a self-supervised group constraint that group attention heads, where each group focuses on an essential but distinctive feature subset. We additionally propose a Voting-to-Stay procedure to remove redundant heads, thus achieving a transformer with lighter weights. Moreover, our method achieves significant performance gains on three well-established tasks while considerably compressing parameters.
CLNov 5, 2020
Improving Event Duration Prediction via Time-aware Pre-trainingZonglin Yang, Xinya Du, Alexander Rush et al.
End-to-end models in NLP rarely encode external world knowledge about length of time. We introduce two effective models for duration prediction, which incorporate external knowledge by reading temporal-related news sentences (time-aware pre-training). Specifically, one model predicts the range/unit where the duration value falls in (R-pred); and the other predicts the exact duration value E-pred. Our best model -- E-pred, substantially outperforms previous work, and captures duration information more accurately than R-pred. We also demonstrate our models are capable of duration prediction in the unsupervised setting, outperforming the baselines.
LGMar 25, 2019
Reducing the dilution: An analysis of the information sensitiveness of capsule network with a practical improvement methodZonglin Yang, Xinggang Wang
Capsule network has shown various advantages over convolutional neural network (CNN). It keeps more precise spatial information than CNN and uses equivariance instead of invariance during inference and highly potential to be a new effective tool for visual tasks. However, the current capsule networks have incompatible performance with CNN when facing datasets with background and complex target objects and are lacking in universal and efficient regularization method. We analyze a main reason of the incompatible performance as the conflict between information sensitiveness of capsule network and unreasonably higher activation value distribution of capsules in primary capsule layer. Correspondingly, we propose a practical improvement method by restraining the activation value of capsules in primary capsule layer to suppress non-informative capsules and highlight discriminative capsules. In the experiments, the method has achieved better performances on various mainstream datasets. In addition, the proposed improvement methods can be seen as a suitable, simple and efficient regularization method that can be generally used in capsule network.