Jessica Knight

Yuyue Zhou, Jessica Knight, Banafshe Felfeliyan et al.

Supervised deep learning offers great promise to automate analysis of medical images from segmentation to diagnosis. However, their performance highly relies on the quality and quantity of the data annotation. Meanwhile, curating large annotated datasets for medical images requires a high level of expertise, which is time-consuming and expensive. Recently, to quench the thirst for large data sets with high-quality annotation, self-supervised learning (SSL) methods using unlabeled domain-specific data, have attracted attention. Therefore, designing an SSL method that relies on minimal quantities of labeled data has far-reaching significance in medical images. This paper investigates the feasibility of deploying the Masked Autoencoder for SSL (SSL-MAE) of TransUNet, for segmenting bony regions from children's wrist ultrasound scans. We found that changing the embedding and loss function in SSL-MAE can produce better downstream results compared to the original SSL-MAE. In addition, we determined that only pretraining TransUNet embedding and encoder with SSL-MAE does not work as well as TransUNet without SSL-MAE pretraining on downstream segmentation tasks.

Yuyue Zhou, Shrimanti Ghosh, Michael et al.

It is often desirable to generalize medical imaging AI models trained with dense annotations to data acquired from different ultrasound scanners or clinical sites; however, retraining these models with new annotations is often difficult and costly. We examine this challenge in pediatric wrist fracture assessment using point-of-care ultrasound (POCUS), where fractures are common and can be effectively triaged via ultrasound. AI has shown radiologist-level performance for fracture detection, often aided by high-quality bony structure segmentation. However, due to significant domain shifts, models perform poorly on data from other centers or probes, and obtaining segmentation labels across devices is impractical due to manual annotation effort and data privacy concerns. To address this, we propose a target-informed self-supervised pretraining and model-ensemble strategy. Specifically, our approach combines masked image modeling (MIM) and contrastive learning to learn target-domain structural representations without labels, and introduces a confidence-aware infusion head to adaptively integrate predictions. The source dataset, collected with a Philips Lumify probe, contained dense labels, while the target dataset, acquired with a TeleMED portable probe, was unlabeled. The datasets were kept strictly separate throughout the entire process. Our method used labeled source data for supervised training and leveraged target-domain pretraining to improve generalization. On 318 images from 62 pediatric POCUS videos, this approach significantly improved cross-device performance, achieving over 6% Dice improvement on the target domain versus the baseline. These results demonstrate a label-efficient and privacy-preserving approach for cross-device-robust ultrasound AI, offering a framework that can be extended to multi-center studies or federated learning setups.

Yuyue Zhou, Banafshe Felfeliyan, Shrimanti Ghosh et al.

Conventional deep learning models deal with images one-by-one, requiring costly and time-consuming expert labeling in the field of medical imaging, and domain-specific restriction limits model generalizability. Visual in-context learning (ICL) is a new and exciting area of research in computer vision. Unlike conventional deep learning, ICL emphasizes the model's ability to adapt to new tasks based on given examples quickly. Inspired by MAE-VQGAN, we proposed a new simple visual ICL method called SimICL, combining visual ICL pairing images with masked image modeling (MIM) designed for self-supervised learning. We validated our method on bony structures segmentation in a wrist ultrasound (US) dataset with limited annotations, where the clinical objective was to segment bony structures to help with further fracture detection. We used a test set containing 3822 images from 18 patients for bony region segmentation. SimICL achieved an remarkably high Dice coeffient (DC) of 0.96 and Jaccard Index (IoU) of 0.92, surpassing state-of-the-art segmentation and visual ICL models (a maximum DC 0.86 and IoU 0.76), with SimICL DC and IoU increasing up to 0.10 and 0.16. This remarkably high agreement with limited manual annotations indicates SimICL could be used for training AI models even on small US datasets. This could dramatically decrease the human expert time required for image labeling compared to conventional approaches, and enhance the real-world use of AI assistance in US image analysis.

Arpan Tripathi, Abhilash Rakkunedeth, Mahesh Raveendranatha Panicker et al.

Most applications of deep learning techniques in medical imaging are supervised and require a large number of labeled data which is expensive and requires many hours of careful annotation by experts. In this paper, we propose an unsupervised, physics driven domain specific transporter framework with an attention mechanism to identify relevant key points with applications in ultrasound imaging. The proposed framework identifies key points that provide a concise geometric representation highlighting regions with high structural variation in ultrasound videos. We incorporate physics driven domain specific information as a feature probability map and use the radon transform to highlight features in specific orientations. The proposed framework has been trained on130 Lung ultrasound (LUS) videos and 113 Wrist ultrasound (WUS) videos and validated on 100 Lung ultrasound (LUS) videos and 58 Wrist ultrasound (WUS) videos acquired from multiple centers across the globe. Images from both datasets were independently assessed by experts to identify clinically relevant features such as A-lines, B-lines and pleura from LUS and radial metaphysis, radial epiphysis and carpal bones from WUS videos. The key points detected from both datasets showed high sensitivity (LUS = 99\% , WUS = 74\%) in detecting the image landmarks identified by experts. Also, on employing for classification of the given lung image into normal and abnormal classes, the proposed approach, even with no prior training, achieved an average accuracy of 97\% and an average F1-score of 95\% respectively on the task of co-classification with 3 fold cross-validation. With the purely unsupervised nature of the proposed approach, we expect the key point detection approach to increase the applicability of ultrasound in various examination performed in emergency and point of care.