Huidong Ma

Huidong Ma, Xinyan Shi, Hui Sun et al.

While Learned Data Compression (LDC) has achieved superior compression ratios, balancing precise probability modeling with system efficiency remains challenging. Crucially, uniform single-stream architectures struggle to simultaneously capture micro-syntactic and macro-semantic features, necessitating deep serial stacking that exacerbates latency. Compounding this, heterogeneous systems are constrained by device speed mismatches, where throughput is capped by Amdahl's Law due to serial processing. To this end, we propose a Dual-Stream Multi-Scale Decoupler that disentangles local and global contexts to replace deep serial processing with shallow parallel streams, and incorporate a Hierarchical Gated Refiner for adaptive feature refinement and precise probability modeling. Furthermore, we design a Concurrent Stream-Parallel Pipeline, which overcomes systemic bottlenecks to achieve full-pipeline parallelism. Extensive experiments demonstrate that our method achieves state-of-the-art performance in both compression ratio and throughput, while maintaining the lowest latency and memory usage. The code is available at https://github.com/huidong-ma/FADE.

Sun Hui, Ding Yanfeng, Huidong Ma et al.

Lossless compression has made significant advancements in Genomics Data (GD) storage, sharing and management. Current learning-based methods are non-evolvable with problems of low-level compression modeling, limited adaptability, and user-unfriendly interface. To this end, we propose AgentGC, the first evolutionary Agent-based GD Compressor, consisting of 3 layers with multi-agent named Leader and Worker. Specifically, the 1) User layer provides a user-friendly interface via Leader combined with LLM; 2) Cognitive layer, driven by the Leader, integrates LLM to consider joint optimization of algorithm-dataset-system, addressing the issues of low-level modeling and limited adaptability; and 3) Compression layer, headed by Worker, performs compression & decompression via a automated multi-knowledge learning-based compression framework. On top of AgentGC, we design 3 modes to support diverse scenarios: CP for compression-ratio priority, TP for throughput priority, and BM for balanced mode. Compared with 14 baselines on 9 datasets, the average compression ratios gains are 16.66%, 16.11%, and 16.33%, the throughput gains are 4.73x, 9.23x, and 9.15x, respectively.

Hui Sun, Yanfeng Ding, Liping Yi et al.

Learning-based lossless compressors play a crucial role in large-scale genomic database backup, storage, transmission, and management. However, their 1) inadequate compression ratio, 2) low compression \& decompression throughput, and 3) poor compression robustness limit their widespread adoption and application in both industry and academia. To solve those challenges, we propose a novel \underline{P}arallel \underline{M}ulti-\underline{K}nowledge \underline{L}earning-based \underline{C}ompressor (PMKLC) with four crucial designs: 1) We propose an automated multi-knowledge learning-based compression framework as compressors' backbone to enhance compression ratio and robustness; 2) we design a GPU-accelerated ($s$,$k$)-mer encoder to optimize compression throughput and computing resource usage; 3) we introduce data block partitioning and Step-wise Model Passing (SMP) mechanisms for parallel acceleration; 4) We design two compression modes PMKLC-S and PMKLC-M to meet the complex application scenarios, where the former runs on a resource-constrained single GPU and the latter is multi-GPU accelerated. We benchmark PMKLC-S/M and 14 baselines (7 traditional and 7 leaning-based) on 15 real-world datasets with different species and data sizes. Compared to baselines on the testing datasets, PMKLC-S/M achieve the average compression ratio improvement up to 73.609\% and 73.480\%, the average throughput improvement up to 3.036$\times$ and 10.710$\times$, respectively. Besides, PMKLC-S/M also achieve the best robustness and competitive memory cost, indicating its greater stability against datasets with different probability distribution perturbations, and its strong ability to run on memory-constrained devices.