Yan V. Sun

Ran Xu, Yiwen Lu, Chang Liu et al.

Electronic Health Records (EHRs) contain rich patient information and are crucial for clinical research and practice. In recent years, deep learning models have been applied to EHRs, but they often rely on massive features, which may not be readily available for all patients. We propose HTP-Star, which leverages hypergraph structures with a pretrain-then-finetune framework for modeling EHR data, enabling seamless integration of additional features. Additionally, we design two techniques, namely (1) Smoothness-inducing Regularization and (2) Group-balanced Reweighting, to enhance the model's robustness during fine-tuning. Through experiments conducted on two real EHR datasets, we demonstrate that HTP-Star consistently outperforms various baselines while striking a balance between patients with basic and extra features.

Oliver Schulte, Zhensong Qian, Arthur E. Kirkpatrick et al.

A Relational Dependency Network (RDN) is a directed graphical model widely used for multi-relational data. These networks allow cyclic dependencies, necessary to represent relational autocorrelations. We describe an approach for learning both the RDN's structure and its parameters, given an input relational database: First learn a Bayesian network (BN), then transform the Bayesian network to an RDN. Thus fast Bayes net learning can provide fast RDN learning. The BN-to-RDN transform comprises a simple, local adjustment of the Bayes net structure and a closed-form transform of the Bayes net parameters. This method can learn an RDN for a dataset with a million tuples in minutes. We empirically compare our approach to state-of-the art RDN learning methods that use functional gradient boosting, on five benchmark datasets. Learning RDNs via BNs scales much better to large datasets than learning RDNs with boosting, and provides competitive accuracy in predictions.

Zhensong Qian, Oliver Schulte, Yan Sun

Databases contain information about which relationships do and do not hold among entities. To make this information accessible for statistical analysis requires computing sufficient statistics that combine information from different database tables. Such statistics may involve any number of {\em positive and negative} relationships. With a naive enumeration approach, computing sufficient statistics for negative relationships is feasible only for small databases. We solve this problem with a new dynamic programming algorithm that performs a virtual join, where the requisite counts are computed without materializing join tables. Contingency table algebra is a new extension of relational algebra, that facilitates the efficient implementation of this Möbius virtual join operation. The Möbius Join scales to large datasets (over 1M tuples) with complex schemas. Empirical evaluation with seven benchmark datasets showed that information about the presence and absence of links can be exploited in feature selection, association rule mining, and Bayesian network learning.