Pavel Sanda

2papers

2 Papers

14.2SIApr 17
Making the complete OpenAIRE citation graph easily accessible through compact data representation

Joakim Skarding, Pavel Sanda

The OpenAIRE graph contains a large citation graph dataset, with over 200 million publications and over 2 billion citations. The current graph is available as a dump with metadata which uncompressed totals ~TB. This makes it hard to process on conventional computers. To make this network more available for the community we provide a processed OpenAIRE graph which is downscaled to 32GB, while preserving the full graph structure. Apart from this we offer the processed data in very simple format, which allows further straightforward manipulation. We also provide a python pipeline, which can be used to process the next releases of the OpenAIRE graph.

MLAug 30, 2024
Higher order definition of causality by optimally conditioned transfer entropy

Jakub Kořenek, Pavel Sanda, Jaroslav Hlinka

The description of the dynamics of complex systems, in particular the capture of the interaction structure and causal relationships between elements of the system, is one of the central questions of interdisciplinary research. While the characterization of pairwise causal interactions is a relatively ripe field with established theoretical concepts and the current focus is on technical issues of their efficient estimation, it turns out that the standard concepts such as Granger causality or transfer entropy may not faithfully reflect possible synergies or interactions of higher orders, phenomena highly relevant for many real-world complex systems. In this paper, we propose a generalization and refinement of the information-theoretic approach to causal inference, enabling the description of truly multivariate, rather than multiple pairwise, causal interactions, and moving thus from causal networks to causal hypernetworks. In particular, while keeping the ability to control for mediating variables or common causes, in case of purely synergetic interactions such as the exclusive disjunction, it ascribes the causal role to the multivariate causal set but \emph{not} to individual inputs, distinguishing it thus from the case of e.g. two additive univariate causes. We demonstrate this concept by application to illustrative theoretical examples as well as a biophysically realistic simulation of biological neuronal dynamics recently reported to employ synergetic computations.