Shuchang Ye

Qiwei Zeng, Hao Wang, Jinghao Lin et al.

Medical vision-language models (VLMs) have shown increasing potential for clinical image interpretation, including lesion detection and report generation. However, their practical utility remains limited by insufficient sensitivity to subtle lesions, whose visual evidence is often sparse, low-contrast, and embedded within complex anatomical context. As local visual tokens are aggregated, these weak lesion cues can become underrepresented in global image representations, making them difficult for medical VLMs to recognize. Existing efforts to improve lesion sensitivity mainly rely on medical-domain vision-encoder pre-training, clinical-term-guided alignment, or trainable pathological representation enhancement. Although effective, these approaches usually require additional training or model-specific adaptation and may overfit to particular disease morphologies, limiting their applicability to frozen medical VLMs. To address these limitations, we propose EasyLens, a training-free plug-and-play subtle-lesion representation amplifier for medical VLMs. EasyLens first constructs EasyBank, a pathology-anatomy prototype space that provides lesion-related prototypes and anatomy-aware normal references for comparing suspicious patches against both pathological and normal anatomical patterns. To avoid blindly amplifying normal tissues, EasyTag selects lesion-relevant patches through counterfactual prototype reasoning. To counteract the dilution of subtle lesion cues in global image representations, EasyAmplifier strengthens the selected lesion-relevant patch representations through morphology-guided residual enhancement, thereby increasing their contribution to the global image embedding. Experiments on multiple medical image datasets and frozen medical VLM backbones show that EasyLens improves subtle-lesion detection and outperforms existing encoder-enhancement baselines.

Qixuan Hu, Shuchang Ye, Xumou Zhang et al.

Cognitive behavioural therapy is widely used to help patients understand and manage psychological distress. It is often delivered through spoken conversation, where therapists attend not only to what patients say, but also to how they say it, because these cues can help therapists decide how to respond and adapt treatment. Progress in building AI systems for CBT remains largely limited to text, partly because most available datasets are text based and shareable spoken CBT data are scarce under ethical and privacy constraints. This creates a blind spot because text based models and evaluations cannot capture the mismatch between the transcript and the patient's voice, even though therapists often rely on this mismatch to understand patient distress. We introduce CBT-Audio, a dataset for evaluating patient distress estimation from spoken CBT sessions with audio language models. CBT-Audio contains 1,802 patient turns from 96 publicly available CBT recordings, with turn-level distress labels validated on an experts-annotated subset. We evaluate 10 open source audio language models under three input conditions, where models receive only patient audio, only the transcript, or both audio and transcript. Our results show that audio can provide useful information beyond text, especially when combined with transcripts. Adding audio to transcript input improves distress estimation over using the transcript alone in 8 of 10 model families, with significant gains in 4, and case studies show the clearest benefit when verbal content and vocal delivery diverge. CBT-Audio makes spoken patient behaviour measurable for AI evaluation in CBT-related tasks and supports future work on audio language models for mental health interaction.

Shuchang Ye, Mingyuan Meng, Mingjian Li et al.

Segmentation of infected areas in chest X-rays is pivotal for facilitating the accurate delineation of pulmonary structures and pathological anomalies. Recently, multi-modal language-guided image segmentation methods have emerged as a promising solution for chest X-rays where the clinical text reports, depicting the assessment of the images, are used as guidance. Nevertheless, existing language-guided methods require clinical reports alongside the images, and hence, they are not applicable for use in image segmentation in a decision support context, but rather limited to retrospective image analysis after clinical reporting has been completed. In this study, we propose a self-guided segmentation framework (SGSeg) that leverages language guidance for training (multi-modal) while enabling text-free inference (uni-modal), which is the first that enables text-free inference in language-guided segmentation. We exploit the critical location information of both pulmonary and pathological structures depicted in the text reports and introduce a novel localization-enhanced report generation (LERG) module to generate clinical reports for self-guidance. Our LERG integrates an object detector and a location-based attention aggregator, weakly-supervised by a location-aware pseudo-label extraction module. Extensive experiments on a well-benchmarked QaTa-COV19 dataset demonstrate that our SGSeg achieved superior performance than existing uni-modal segmentation methods and closely matched the state-of-the-art performance of multi-modal language-guided segmentation methods.

Pengyu Wang, Shuchang Ye, Usman Naseem et al.

Medical report generation (MRG) aims to automatically derive radiology-style reports from medical images to aid in clinical decision-making. However, existing methods often generate text that mimics the linguistic style of radiologists but fails to guarantee clinical correctness, because they are trained on token-level objectives which focus on word-choice and sentence structure rather than actual medical accuracy. We propose a semantic-driven reinforcement learning (SRL) method for medical report generation, adopted on a large vision-language model (LVLM). SRL adopts Group Relative Policy Optimization (GRPO) to encourage clinical-correctness-guided learning beyond imitation of language style. Specifically, we optimise a report-level reward: a margin-based cosine similarity (MCCS) computed between key radiological findings extracted from generated and reference reports, thereby directly aligning clinical-label agreement and improving semantic correctness. A lightweight reasoning format constraint further guides the model to generate structured "thinking report" outputs. We evaluate Medical Report Generation with Sematic-driven Reinforment Learning (MRG-R1), on two datasets: IU X-Ray and MIMIC-CXR using clinical efficacy (CE) metrics. MRG-R1 achieves state-of-the-art performance with CE-F1 51.88 on IU X-Ray and 40.39 on MIMIC-CXR. We found that the label-semantic reinforcement is better than conventional token-level supervision. These results indicate that optimizing a clinically grounded, report-level reward rather than token overlap,meaningfully improves clinical correctness. This work is a prior to explore semantic-reinforcement in supervising medical correctness in medical Large vision-language model(Med-LVLM) training.

Shuchang Ye, Mingyuan Meng, Hao Wang et al.

Anatomical structure labels for chest radiographs are essential for medical image segmentation and a broad range of downstream diagnostic tasks. However, annotating anatomy directly on 2D chest radiographs is labor-intensive and intrinsically ambiguous, as 3D anatomical structures are projected onto a single 2D plane where boundaries may overlap, be occluded, or appear only partially visible. Consequently, existing anatomy-labeled chest radiograph datasets remain limited in scale, anatomy coverage, and label reliability. To address these limitations, we introduce RadGenome-Anatomy, the largest anatomy-labeled chest radiograph dataset, containing over 10 million segmentation masks across 210 anatomical structures in 25,692 studies. It is constructed by projecting large-scale 3D anatomical masks from CT volumes into 2D radiographic space through canonical radiographic geometry. This shifts annotation from directly tracing uncertain 2D boundaries to defining anatomy in volumetric space, where structures that overlap or become partially invisible in radiographs remain spatially separable. As a result, each 2D mask represents the physically grounded projected footprint of a volumetrically defined structure. The scale and broad anatomical coverage of RadGenome-Anatomy, including structures that are overlapping, partially visible, or difficult to delineate directly, enable research on geometric measurements as explicit evidence for chest radiograph interpretation. We demonstrate this by training XAnatomy to predict structure-specific masks and derive clinically relevant measurements, achieving diagnostic accuracies of 96.4%, 95.6%, and 89.2% for cardiomegaly, kyphosis, and scoliosis, respectively.

Shuchang Ye, Usman Naseem, Mingyuan Meng et al.

Medical Visual Question Answering (MedVQA) is crucial for enhancing the efficiency of clinical diagnosis by providing accurate and timely responses to clinicians' inquiries regarding medical images. Existing MedVQA models suffered from modality preference bias, where predictions are heavily dominated by one modality while overlooking the other (in MedVQA, usually questions dominate the answer but images are overlooked), thereby failing to learn multimodal knowledge. To overcome the modality preference bias, we proposed a Medical CounterFactual VQA (MedCFVQA) model, which trains with bias and leverages causal graphs to eliminate the modality preference bias during inference. Existing MedVQA datasets exhibit substantial prior dependencies between questions and answers, which results in acceptable performance even if the model significantly suffers from the modality preference bias. To address this issue, we reconstructed new datasets by leveraging existing MedVQA datasets and Changed their P3rior dependencies (CP) between questions and their answers in the training and test set. Extensive experiments demonstrate that MedCFVQA significantly outperforms its non-causal counterpart on both SLAKE, RadVQA and SLAKE-CP, RadVQA-CP datasets.

Pengyu Wang, Shuchang Ye, Usman Naseem et al.

Medical Large Vision-Language Models (Med-LVLMs) have been widely adopted for medical report generation. Despite Med-LVLMs producing state-of-the-art performance, they exhibit a bias toward predicting all findings as normal, leading to reports that overlook critical abnormalities. Furthermore, these models often fail to provide comprehensive descriptions of radiologically relevant regions necessary for accurate diagnosis. To address these challenges, we proposeMedical Report Generation Agents (MRGAgents), a novel multi-agent framework that fine-tunes specialized agents for different disease categories. By curating subsets of the IU X-ray and MIMIC-CXR datasets to train disease-specific agents, MRGAgents generates reports that more effectively balance normal and abnormal findings while ensuring a comprehensive description of clinically relevant regions. Our experiments demonstrate that MRGAgents outperformed the state-of-the-art, improving both report comprehensiveness and diagnostic utility.

Mingxiao Tu, Shuchang Ye, Hoijoon Jung et al.

Generating high-quality, photorealistic textures for 3D human avatars remains a fundamental yet challenging task in computer vision and multimedia field. However, real paired front and back images of human subjects are rarely available with privacy, ethical and cost of acquisition, which restricts scalability of the data. Additionally, learning priors from image inputs using deep generative models, such as GANs or diffusion models, to infer unseen regions such as the human back often leads to artifacts, structural inconsistencies, or loss of fine-grained detail. To address these issues, we present SMPL-GPTexture (skinned multi-person linear model - general purpose Texture), a novel pipeline that takes natural language prompts as input and leverages a state-of-the-art text-to-image generation model to produce paired high-resolution front and back images of a human subject as the starting point for texture estimation. Using the generated paired dual-view images, we first employ a human mesh recovery model to obtain a robust 2D-to-3D SMPL alignment between image pixels and the 3D model's UV coordinates for each views. Second, we use an inverted rasterization technique that explicitly projects the observed colour from the input images into the UV space, thereby producing accurate, complete texture maps. Finally, we apply a diffusion-based inpainting module to fill in the missing regions, and the fusion mechanism then combines these results into a unified full texture map. Extensive experiments shows that our SMPL-GPTexture can generate high resolution texture aligned with user's prompts.

Mingjian Li, Mingyuan Meng, Shuchang Ye et al.

Medical image segmentation is crucial in modern medical image analysis, which can aid into diagnosis of various disease conditions. Recently, language-guided segmentation methods have shown promising results in automating image segmentation where text reports are incorporated as guidance. These text reports, containing image impressions and insights given by clinicians, provides auxiliary guidance. However, these methods neglect the inherent pattern gaps between the two distinct modalities, which leads to sub-optimal image-text feature fusion without proper cross-modality feature alignments. Contrastive alignments are widely used to associate image-text semantics in representation learning; however, it has not been exploited to bridge the pattern gaps in language-guided segmentation that relies on subtle low level image details to represent diseases. Existing contrastive alignment methods typically algin high-level global image semantics without involving low-level, localized target information, and therefore fails to explore fine-grained text guidance for language-guided segmentation. In this study, we propose a language-guided segmentation network with Target-informed Multi-level Contrastive Alignments (TMCA). TMCA enables target-informed cross-modality alignments and fine-grained text guidance to bridge the pattern gaps in language-guided segmentation. Specifically, we introduce: 1) a target-sensitive semantic distance module that enables granular image-text alignment modelling, and 2) a multi-level alignment strategy that directs text guidance on low-level image features. In addition, a language-guided target enhancement module is proposed to leverage the aligned text to redirect attention to focus on critical localized image features. Extensive experiments on 4 image-text datasets, involving 3 medical imaging modalities, demonstrated that our TMCA achieved superior performances.

Jineel H Raythatha, Shuchang Ye, Jeremy Hsu et al.

Purpose: Translating foundation models into clinical practice requires evaluating their performance under compound distribution shift, where severe class imbalance coexists with heterogeneous imaging appearances. This challenge is relevant for traumatic bowel injury, a rare but high-mortality diagnosis. We investigated whether specificity deficits in foundation models are associated with heterogeneity in the negative class. Methods: This retrospective study used the multi-institutional, RSNA Abdominal Traumatic Injury CT dataset (2019-2023), comprising scans from 23 centres. Two foundation models (MedCLIP, zero-shot; RadDINO, linear probe) were compared against three task-specific approaches (CNN, Transformer, Ensemble). Models were trained on 3,147 patients (2.3% bowel injury prevalence) and evaluated on an enriched 100-patient test set. To isolate negative-class effects, specificity was assessed in patients without bowel injury who had concurrent solid organ injury (n=58) versus no abdominal pathology (n=50). Results: Foundation models achieved equivalent discrimination to task-specific models (AUC, 0.64-0.68 versus 0.58-0.64) with higher sensitivity (79-91% vs 41-74%) but lower specificity (33-50% vs 50-88%). All models demonstrated high specificity in patients without abdominal pathology (84-100%). When solid organ injuries were present, specificity declined substantially for foundation models (50-51 percentage points) compared with smaller reductions of 12-41 percentage points for task-specific models. Conclusion: Foundation models matched task-specific discrimination without task-specific training, but their specificity deficits were driven primarily by confounding negative-class heterogeneity rather than prevalence alone. Susceptibility to negative-class heterogeneity decreased progressively with labelled training, suggesting adaptation is required before clinical implementation.

Shuchang Ye, Usman Naseem, Mingyuan Meng et al.

Medical language-guided segmentation, integrating textual clinical reports as auxiliary guidance to enhance image segmentation, has demonstrated significant improvements over unimodal approaches. However, its inherent reliance on paired image-text input, which we refer to as ``textual reliance", presents two fundamental limitations: 1) many medical segmentation datasets lack paired reports, leaving a substantial portion of image-only data underutilized for training; and 2) inference is limited to retrospective analysis of cases with paired reports, limiting its applicability in most clinical scenarios where segmentation typically precedes reporting. To address these limitations, we propose ProLearn, the first Prototype-driven Learning framework for language-guided segmentation that fundamentally alleviates textual reliance. At its core, we introduce a novel Prototype-driven Semantic Approximation (PSA) module to enable approximation of semantic guidance from textual input. PSA initializes a discrete and compact prototype space by distilling segmentation-relevant semantics from textual reports. Once initialized, it supports a query-and-respond mechanism which approximates semantic guidance for images without textual input, thereby alleviating textual reliance. Extensive experiments on QaTa-COV19, MosMedData+ and Kvasir-SEG demonstrate that ProLearn outperforms state-of-the-art language-guided methods when limited text is available.

Andrew Zhang, Hao Wang, Shuchang Ye et al.

Patient motion during medical image acquisition causes blurring, ghosting, and distorts organs, which makes image interpretation challenging. Current state-of-the-art algorithms using Generative Adversarial Network (GAN)-based methods with their ability to learn the mappings between corrupted images and their ground truth via Structural Similarity Index Measure (SSIM) loss effectively generate motion-free images. However, we identified the following limitations: (i) they mainly focus on global structural characteristics and therefore overlook localized features that often carry critical pathological information, and (ii) the SSIM loss function struggles to handle images with varying pixel intensities, luminance factors, and variance. In this study, we propose Motion-Aware Image SYnthesis (MAISY) which initially characterize motion and then uses it for correction by: (a) leveraging the foundation model Segment Anything Model (SAM), to dynamically learn spatial patterns along anatomical boundaries where motion artifacts are most pronounced and, (b) introducing the Variance-Selective SSIM (VS-SSIM) loss which adaptively emphasizes spatial regions with high pixel variance to preserve essential anatomical details during artifact correction. Experiments on chest and head CT datasets demonstrate that our model outperformed the state-of-the-art counterparts, with Peak Signal-to-Noise Ratio (PSNR) increasing by 40%, SSIM by 10%, and Dice by 16%.

Hao Wang, Shuchang Ye, Jinghao Lin et al.

Large vision-language models (LVMs) hold a great promise for automating medical report generation, potentially reducing the burden of manual reporting. State-of-the-art (SOTA) research fine-tunes general LVMs with medical data to align radiology images to corresponding medical reports. However, there are two key factors that limit these LVM's performance. Firstly, LVMs lack complex reasoning capability that leads to logical inconsistencies and potential diagnostic errors in generated reports. Secondly, LVMs lack reflection mechanism that leads to an inability to discover errors in the thinking process. To address these gaps, we propose LVMed-R2, a new fine-tuning strategy that introduces complex reasoning and reflection mechanisms for LVMs to enhance medical report generation. To the best of our knowledge, this is the first work to introduce complex reasoning to the medical report generation (MRG) task. Our proposed complex reasoning contains medical knowledge injection and perception-enhancing modules which improve the accuracy of LVMs diagnosis, coupled with a perception tree to provide guidance to limit the perception range. Further, the reflection mechanism forces self-verification for outputs to correct for potential errors. We experimented by fine-tuning LVMs with our proposed LVMed-R2 strategy, using IU-Xray and MIMIC-CXR datasets. Our results, measured on natural language generation (NLG) metrics and clinical efficacy (CE) metrics, demonstrate that LVMs fine-tuned with the proposed reflection mechanism possess the ability to correct outputs and complex reasoning effectively and improve LVMs performance for MRG.

Shuchang Ye, Mingyuan Meng, Mingjian Li et al.

Automated medical report generation has demonstrated the potential to significantly reduce the workload associated with time-consuming medical reporting. Recent generative representation learning methods have shown promise in integrating vision and language modalities for medical report generation. However, when trained end-to-end and applied directly to medical image-to-text generation, they face two significant challenges: i) difficulty in accurately capturing subtle yet crucial pathological details, and ii) reliance on both visual and textual inputs during inference, leading to performance degradation in zero-shot inference when only images are available. To address these challenges, this study proposes a novel multimodal dynamic traceback learning framework (DTrace). Specifically, we introduce a traceback mechanism to supervise the semantic validity of generated content and a dynamic learning strategy to adapt to various proportions of image and text input, enabling text generation without strong reliance on the input from both modalities during inference. The learning of cross-modal knowledge is enhanced by supervising the model to recover masked semantic information from a complementary counterpart. Extensive experiments conducted on two benchmark datasets, IU-Xray and MIMIC-CXR, demonstrate that the proposed DTrace framework outperforms state-of-the-art methods for medical report generation.