Bruno Petrungaro

Bruno Petrungaro, Anthony C. Constantinou

Causal machine learning (ML) recovers graphical structures that inform us about potential cause-and-effect relationships. Most progress has focused on cross-sectional data with no explicit time order, whereas recovering causal structures from time series data remains the subject of ongoing research in causal ML. In addition to traditional causal ML, this study assesses econometric methods that some argue can recover causal structures from time series data. The use of these methods can be explained by the significant attention the field of econometrics has given to causality, and specifically to time series, over the years. This presents the possibility of comparing the causal discovery performance between econometric and traditional causal ML algorithms. We seek to understand if there are lessons to be incorporated into causal ML from econometrics, and provide code to translate the results of these econometric methods to the most widely used Bayesian Network R library, bnlearn. We investigate the benefits and challenges that these algorithms present in supporting policy decision-making, using the real-world case of COVID-19 in the UK as an example. Four econometric methods are evaluated in terms of graphical structure, model dimensionality, and their ability to recover causal effects, and these results are compared with those of eleven causal ML algorithms. Amongst our main results, we see that econometric methods provide clear rules for temporal structures, whereas causal-ML algorithms offer broader discovery by exploring a larger space of graph structures that tends to lead to denser graphs that capture more identifiable causal relationships.

Bruno Petrungaro, Anthony C. Constantinou

Causal Bayesian Networks (CBNs) are a powerful tool for reasoning under uncertainty about complex real-world problems. Such problems evolve over time, responding to external shocks as they occur. To support decision-making, CBNs require a cause-and-effect map of the variables under consideration, known as the network's structure. Learning the graphical structure of a causal model from data remains challenging; learning it from time-series data is even harder because dependencies may arise at different time lags. Existing time-series causal discovery methods often assume a fixed lag window and do not explicitly optimise edge-specific lags. We propose a Tabu-based structure learning algorithm that searches for a time-ordered directed structure (i.e., where every edge respects time) while allowing edge-specific lags up to a specified maximum lag. The approach uses a decomposable BIC-based score with node-specific effective sample sizes and an explicit lag-length penalty encouraging parsimonious delay assignments while preserving efficient local score updates. We provide theoretical guarantees of validity and local optimality, and we also describe a parallel implementation for improved scalability. In simulations, the method recovered graph structure competitively and estimated lags accurately when true adjacencies were recovered. On a real-world UK COVID-19 policy dataset, the learnt structure was dominated by short delays while retaining a substantial minority of longer-lag dependencies, consistent with delayed behavioural and epidemiological effects.

Bruno Petrungaro, Neville K. Kitson, Anthony C. Constantinou

Sepsis is a life-threatening and serious global health issue. This study combines knowledge with available hospital data to investigate the potential causes of Sepsis that can be affected by policy decisions. We investigate the underlying causal structure of this problem by combining clinical expertise with score-based, constraint-based, and hybrid structure learning algorithms. A novel approach to model averaging and knowledge-based constraints was implemented to arrive at a consensus structure for causal inference. The structure learning process highlighted the importance of exploring data-driven approaches alongside clinical expertise. This includes discovering unexpected, although reasonable, relationships from a clinical perspective. Hypothetical interventions on Chronic Obstructive Pulmonary Disease, Alcohol dependence, and Diabetes suggest that the presence of any of these risk factors in patients increases the likelihood of Sepsis. This finding, alongside measuring the effect of these risk factors on Sepsis, has potential policy implications. Recognising the importance of prediction in improving health outcomes related to Sepsis, the model is also assessed in its ability to predict Sepsis by evaluating accuracy, sensitivity, and specificity. These three indicators all had results around 70%, and the AUC was 80%, which means the causal structure of the model is reasonably accurate given that the models were trained on data available for commissioning purposes only.

Anthony Constantinou, Neville K. Kitson, Yang Liu et al.

Causal machine learning (ML) algorithms recover graphical structures that tell us something about cause-and-effect relationships. The causal representation praovided by these algorithms enables transparency and explainability, which is necessary for decision making in critical real-world problems. Yet, causal ML has had limited impact in practice compared to associational ML. This paper investigates the challenges of causal ML with application to COVID-19 UK pandemic data. We collate data from various public sources and investigate what the various structure learning algorithms learn from these data. We explore the impact of different data formats on algorithms spanning different classes of learning, and assess the results produced by each algorithm, and groups of algorithms, in terms of graphical structure, model dimensionality, sensitivity analysis, confounding variables, predictive and interventional inference. We use these results to highlight open problems in causal structure learning and directions for future research. To facilitate future work, we make all graphs, models, data sets, and source code publicly available online.