Sarada Prasad Dakua

Ayman Al-Kababji, Faycal Bensaali, Sarada Prasad Dakua et al.

Artificial Intelligence (AI) is a pervasive research topic, permeating various sectors and applications. In this study, we harness the power of AI, specifically convolutional neural networks (ConvNets), for segmenting liver tissues. It also focuses on developing a user-friendly graphical user interface (GUI) tool, "AI Radiologist", enabling clinicians to effectively delineate different liver tissues (parenchyma, tumors, and vessels), thereby saving lives. This endeavor bridges the gap between academic research and practical, industrial applications. The GUI is a single-page application and is designed using the PyQt5 Python framework. The offline-available AI Radiologist resorts to three ConvNet models trained to segment all liver tissues. With respect to the Dice metric, the best liver ConvNet scores 98.16%, the best tumor ConvNet scores 65.95%, and the best vessel ConvNet scores 51.94%. It outputs 2D slices of the liver, tumors, and vessels, along with 3D interpolations in .obj and .mtl formats, which can be visualized/printed using any 3D-compatible software. Thus, the AI Radiologist offers a convenient tool for clinicians to perform liver tissue segmentation and 3D interpolation employing state-of-the-art models for tissues segmentation. With the provided capacity to select the volumes and pre-trained models, the clinicians can leave the rest to the AI Radiologist.

Ayman Al-Kababji, Faycal Bensaali, Sarada Prasad Dakua

Machine learning and computer vision techniques have influenced many fields including the biomedical one. The aim of this paper is to investigate the important concept of schedulers in manipulating the learning rate (LR), for the liver segmentation task, throughout the training process, focusing on the newly devised OneCycleLR against the ReduceLRonPlateau. A dataset, published in 2018 and produced by the Medical Segmentation Decathlon Challenge organizers, called Task 8 Hepatic Vessel (MSDC-T8) has been used for testing and validation. The reported results that have the same number of maximum epochs (75), and are the average of 5-fold cross-validation, indicate that ReduceLRonPlateau converges faster while maintaining a similar or even better loss score on the validation set when compared to OneCycleLR. The epoch at which the peak LR occurs perhaps should be made early for the OneCycleLR such that the super-convergence feature can be observed. Moreover, the overall results outperform the state-of-the-art results from the researchers who published the liver masks for this dataset. To conclude, both schedulers are suitable for medical segmentation challenges, especially the MSDC-T8 dataset, and can be used confidently in rapidly converging the validation loss with a minimal number of epochs.

Ayman Al-Kababji, Faycal Bensaali, Sarada Prasad Dakua et al.

Machine learning and computer vision techniques have grown rapidly in recent years due to their automation, suitability, and ability to generate astounding results. Hence, in this paper, we survey the key studies that are published between 2014 and 2022, showcasing the different machine learning algorithms researchers have used to segment the liver, hepatic tumors, and hepatic-vasculature structures. We divide the surveyed studies based on the tissue of interest (hepatic-parenchyma, hepatic-tumors, or hepatic-vessels), highlighting the studies that tackle more than one task simultaneously. Additionally, the machine learning algorithms are classified as either supervised or unsupervised, and they are further partitioned if the amount of work that falls under a certain scheme is significant. Moreover, different datasets and challenges found in literature and websites containing masks of the aforementioned tissues are thoroughly discussed, highlighting the organizers' original contributions and those of other researchers. Also, the metrics used excessively in literature are mentioned in our review, stressing their relevance to the task at hand. Finally, critical challenges and future directions are emphasized for innovative researchers to tackle, exposing gaps that need addressing, such as the scarcity of many studies on the vessels' segmentation challenge and why their absence needs to be dealt with sooner than later.