Katherine L. Bouman

Berthy T. Feng, Jamie Smith, Michael Rubinstein et al.

Priors are essential for reconstructing images from noisy and/or incomplete measurements. The choice of the prior determines both the quality and uncertainty of recovered images. We propose turning score-based diffusion models into principled image priors ("score-based priors") for analyzing a posterior of images given measurements. Previously, probabilistic priors were limited to handcrafted regularizers and simple distributions. In this work, we empirically validate the theoretically-proven probability function of a score-based diffusion model. We show how to sample from resulting posteriors by using this probability function for variational inference. Our results, including experiments on denoising, deblurring, and interferometric imaging, suggest that score-based priors enable principled inference with a sophisticated, data-driven image prior.

Yu Sun, Zihui Wu, Yifan Chen et al.

Estimating high-quality images while also quantifying their uncertainty are two desired features in an image reconstruction algorithm for solving ill-posed inverse problems. In this paper, we propose plug-and-play Monte Carlo (PMC) as a principled framework for characterizing the space of possible solutions to a general inverse problem. PMC is able to incorporate expressive score-based generative priors for high-quality image reconstruction while also performing uncertainty quantification via posterior sampling. In particular, we develop two PMC algorithms that can be viewed as the sampling analogues of the traditional plug-and-play priors (PnP) and regularization by denoising (RED) algorithms. To improve the sampling efficiency, we introduce weighted annealing into these PMC algorithms, further developing two additional annealed PMC algorithms (APMC). We establish a theoretical analysis for characterizing the convergence behavior of PMC algorithms. Our analysis provides non-asymptotic stationarity guarantees in terms of the Fisher information, fully compatible with the joint presence of weighted annealing, potentially non-log-concave likelihoods, and imperfect score networks. We demonstrate the performance of the PMC algorithms on multiple representative inverse problems with both linear and nonlinear forward models. Experimental results show that PMC significantly improves reconstruction quality and enables high-fidelity uncertainty quantification.

Aviad Levis, Pratul P. Srinivasan, Andrew A. Chael et al.

Measurements from the Event Horizon Telescope enabled the visualization of light emission around a black hole for the first time. So far, these measurements have been used to recover a 2D image under the assumption that the emission field is static over the period of acquisition. In this work, we propose BH-NeRF, a novel tomography approach that leverages gravitational lensing to recover the continuous 3D emission field near a black hole. Compared to other 3D reconstruction or tomography settings, this task poses two significant challenges: first, rays near black holes follow curved paths dictated by general relativity, and second, we only observe measurements from a single viewpoint. Our method captures the unknown emission field using a continuous volumetric function parameterized by a coordinate-based neural network, and uses knowledge of Keplerian orbital dynamics to establish correspondence between 3D points over time. Together, these enable BH-NeRF to recover accurate 3D emission fields, even in challenging situations with sparse measurements and uncertain orbital dynamics. This work takes the first steps in showing how future measurements from the Event Horizon Telescope could be used to recover evolving 3D emission around the supermassive black hole in our Galactic center.

Brandon Zhao, Diana Scognamiglio, Olivier Doré et al.

Reconstructing the three-dimensional distribution of dark matter from weak-lensing observations is a central but highly ill-posed inverse problem in cosmology. Unlike standard 3D reconstruction with multiple viewpoints, we observe the universe from a single line of sight, through noisy shape distortions of galaxies with uncertain distances, so meaningful recovery of the 3D matter field requires strong prior assumptions. Existing methods either produce point estimates with handcrafted priors or use neural ensembles for approximate Bayesian uncertainty, and struggle to capture the non-Gaussian, filamentary structure of the cosmic web. With the advent of new high-resolution cosmological simulations, we now have an alternative source of prior knowledge that captures the nonlinear statistics of structure formation with far greater fidelity than analytic prescriptions. We leverage these simulations to build a new dataset $\texttt{Conicus3D}$, which enables us to learn a data-driven diffusion-model prior capturing the full 3D distribution of dark matter structure across cosmic time. Building on recent plug-and-play approaches, we modify a diffusion-based posterior sampling scheme to the 3D weak-lensing setting, combining the learned prior with a differentiable physical forward model. On realistic simulations targeting a modern weak lensing survey, our approach yields substantially improved 2D and 3D reconstruction accuracy over baseline methods. Moreover, it produces posterior samples whose statistics closely track the underlying simulations, while remaining robust to moderate shifts in cosmology.

Berthy T. Feng, Katherine L. Bouman

We propose a surrogate function for efficient yet principled use of score-based priors in Bayesian imaging. We consider ill-posed inverse imaging problems in which one aims for a clean image posterior given incomplete or noisy measurements. Since the measurements do not uniquely determine a true image, a prior is needed to constrain the solution space. Recent work turned score-based diffusion models into principled priors for solving ill-posed imaging problems by appealing to an ODE-based log-probability function. However, evaluating the ODE is computationally inefficient and inhibits posterior estimation of high-dimensional images. Our proposed surrogate prior is based on the evidence lower bound of a score-based diffusion model. We demonstrate the surrogate prior on variational inference for efficient approximate posterior sampling of large images. Compared to the exact prior in previous work, our surrogate accelerates optimization of the variational image distribution by at least two orders of magnitude. We also find that our principled approach gives more accurate posterior estimation than non-variational diffusion-based approaches that involve hyperparameter-tuning at inference. Our work establishes a practical path forward for using score-based diffusion models as general-purpose image priors.

Aviad Levis, Andrew A. Chael, Katherine L. Bouman et al.

The interaction between the supermassive black hole at the center of the Milky Way, Sagittarius A*, and its accretion disk occasionally produces high-energy flares seen in X-ray, infrared, and radio. One proposed mechanism that produces flares is the formation of compact, bright regions that appear within the accretion disk and close to the event horizon. Understanding these flares provides a window into accretion processes. Although sophisticated simulations predict the formation of these flares, their structure has yet to be recovered by observations. Here we show the first three-dimensional (3D) reconstruction of an emission flare recovered from ALMA light curves observed on April 11, 2017. Our recovery shows compact, bright regions at a distance of roughly six times the event horizon. Moreover, it suggests a clockwise rotation in a low-inclination orbital plane, consistent with prior studies by GRAVITY and EHT. To recover this emission structure, we solve an ill-posed tomography problem by integrating a neural 3D representation with a gravitational model for black holes. Although the recovery is subject to, and sometimes sensitive to, the model assumptions, under physically motivated choices, our results are stable, and our approach is successful on simulated data.

Brandon Zhao, Aviad Levis, Liam Connor et al.

Refractive Index Tomography is the inverse problem of reconstructing the continuously-varying 3D refractive index in a scene using 2D projected image measurements. Although a purely refractive field is not directly visible, it bends light rays as they travel through space, thus providing a signal for reconstruction. The effects of such fields appear in many scientific computer vision settings, ranging from refraction due to transparent cells in microscopy to the lensing of distant galaxies caused by dark matter in astrophysics. Reconstructing these fields is particularly difficult due to the complex nonlinear effects of the refractive field on observed images. Furthermore, while standard 3D reconstruction and tomography settings typically have access to observations of the scene from many viewpoints, many refractive index tomography problem settings only have access to images observed from a single viewpoint. We introduce a method that leverages prior knowledge of light sources scattered throughout the refractive medium to help disambiguate the single-view refractive index tomography problem. We differentiably trace curved rays through a neural field representation of the refractive field, and optimize its parameters to best reproduce the observed image. We demonstrate the efficacy of our approach by reconstructing simulated refractive fields, analyze the effects of light source distribution on the recovered field, and test our method on a simulated dark matter mapping problem where we successfully recover the 3D refractive field caused by a realistic dark matter distribution.

Angela F. Gao, Oscar Leong, He Sun et al.

We consider solving ill-posed imaging inverse problems without access to an explicit image prior or ground-truth examples. An overarching challenge in inverse problems is that there are many undesired images that fit to the observed measurements, thus requiring image priors to constrain the space of possible solutions to more plausible reconstructions. However, in many applications it is difficult or potentially impossible to obtain ground-truth images to learn an image prior. Thus, inaccurate priors are often used, which inevitably result in biased solutions. Rather than solving an inverse problem using priors that encode the explicit structure of any one image, we propose to solve a set of inverse problems jointly by incorporating prior constraints on the collective structure of the underlying images.The key assumption of our work is that the ground-truth images we aim to reconstruct share common, low-dimensional structure. We show that such a set of inverse problems can be solved simultaneously by learning a shared image generator with a low-dimensional latent space. The parameters of the generator and latent embedding are learned by maximizing a proxy for the Evidence Lower Bound (ELBO). Once learned, the generator and latent embeddings can be combined to provide reconstructions for each inverse problem. The framework we propose can handle general forward model corruptions, and we show that measurements derived from only a few ground-truth images (O(10)) are sufficient for image reconstruction without explicit priors.

Zihui Wu, Tianwei Yin, Yu Sun et al.

Compressed sensing magnetic resonance imaging (CS-MRI) seeks to recover visual information from subsampled measurements for diagnostic tasks. Traditional CS-MRI methods often separately address measurement subsampling, image reconstruction, and task prediction, resulting in a suboptimal end-to-end performance. In this work, we propose TACKLE as a unified co-design framework for jointly optimizing subsampling, reconstruction, and prediction strategies for the performance on downstream tasks. The naïve approach of simply appending a task prediction module and training with a task-specific loss leads to suboptimal downstream performance. Instead, we develop a training procedure where a backbone architecture is first trained for a generic pre-training task (image reconstruction in our case), and then fine-tuned for different downstream tasks with a prediction head. Experimental results on multiple public MRI datasets show that TACKLE achieves an improved performance on various tasks over traditional CS-MRI methods. We also demonstrate that TACKLE is robust to distribution shifts by showing that it generalizes to a new dataset we experimentally collected using different acquisition setups from the training data. Without additional fine-tuning, TACKLE leads to both numerical and visual improvements compared to existing baselines. We have further implemented a learned 4$\times$-accelerated sequence on a Siemens 3T MRI Skyra scanner. Compared to the fully-sampling scan that takes 335 seconds, our optimized sequence only takes 84 seconds, achieving a four-fold time reduction as desired, while maintaining high performance.

Oscar Leong, Angela F. Gao, He Sun et al.

We consider solving ill-posed imaging inverse problems without access to an image prior or ground-truth examples. An overarching challenge in these inverse problems is that an infinite number of images, including many that are implausible, are consistent with the observed measurements. Thus, image priors are required to reduce the space of possible solutions to more desirable reconstructions. However, in many applications it is difficult or potentially impossible to obtain example images to construct an image prior. Hence inaccurate priors are often used, which inevitably result in biased solutions. Rather than solving an inverse problem using priors that encode the spatial structure of any one image, we propose to solve a set of inverse problems jointly by incorporating prior constraints on the collective structure of the underlying images. The key assumption of our work is that the underlying images we aim to reconstruct share common, low-dimensional structure. We show that such a set of inverse problems can be solved simultaneously without the use of a spatial image prior by instead inferring a shared image generator with a low-dimensional latent space. The parameters of the generator and latent embeddings are found by maximizing a proxy for the Evidence Lower Bound (ELBO). Once identified, the generator and latent embeddings can be combined to provide reconstructed images for each inverse problem. The framework we propose can handle general forward model corruptions, and we show that measurements derived from only a small number of ground-truth images ($\leqslant 150$) are sufficient for image reconstruction. We demonstrate our approach on a variety of convex and non-convex inverse problems, including denoising, phase retrieval, and black hole video reconstruction.

Diego Royo, Brandon Zhao, Adolfo Muñoz et al.

Galaxy clusters are powerful probes of astrophysics and cosmology through gravitational lensing: the clusters' mass, dominated by 85% dark matter, distorts background light. Yet, mass reconstruction lacks the scalability and large-scale benchmarks to process the hundreds of thousands of clusters expected from forthcoming wide-field surveys. We introduce a fully automated method to reconstruct cluster surface mass density from photometry and gravitational lensing observables. Central to our approach is DarkClusters-15k, our new dataset of 15,000 simulated clusters with paired mass and photometry maps, the largest benchmark to date, spanning multiple redshifts and simulation frameworks. We train a plug-and-play diffusion prior on DarkClusters-15k that learns the statistical relationship between mass and light, and draw posterior samples constrained by weak- and strong-lensing observables; this yields principled reconstructions driven by explicit physics, alongside well-calibrated uncertainties. Our approach requires no expert tuning, runs in minutes rather than hours, achieves higher accuracy, and matches expertly-tuned reconstructions of the MACS 1206 cluster. We release our method and DarkClusters-15k to support development and benchmarking for upcoming wide-field cosmological surveys.

Berthy T. Feng, Andrew A. Chael, David Bromley et al.

With the success of static black-hole imaging, the next frontier is the dynamic and 3D imaging of black holes. Recovering the dynamic 3D gas near a black hole would reveal previously-unseen parts of the universe and inform new physics models. However, only sparse radio measurements from a single viewpoint are possible, making the dynamic 3D reconstruction problem significantly ill-posed. Previously, BH-NeRF addressed the ill-posed problem by assuming Keplerian dynamics of the gas, but this assumption breaks down near the black hole, where the strong gravitational pull of the black hole and increased electromagnetic activity complicate fluid dynamics. To overcome the restrictive assumptions of BH-NeRF, we propose PI-DEF, a physics-informed approach that uses differentiable neural rendering to fit a 4D (time + 3D) emissivity field given EHT measurements. Our approach jointly reconstructs the 3D velocity field with the 4D emissivity field and enforces the velocity as a soft constraint on the dynamics of the emissivity. In experiments on simulated data, we find significantly improved reconstruction accuracy over both BH-NeRF and a physics-agnostic approach. We demonstrate how our method may be used to estimate other physics parameters of the black hole, such as its spin.

Zihui Wu, Liam Connor, Samuel McCarty et al.

Radio interferometry enables high-resolution imaging of astronomical radio sources by synthesizing a large effective aperture from an array of antennas and solving a deconvolution problem to reconstruct the image. Deep learning has emerged as a promising solution to the imaging problem, reducing computational costs and enabling super-resolution. However, existing DL-based methods often fall short of the requirements for real-world deployment due to limitations in handling high dynamic range, large field of view, and mismatches between training and test conditions. In this work, we build upon and extend the POLISH framework, a recent DL model for radio interferometric imaging. We introduce key improvements to enable robust reconstruction and super-resolution under real-world conditions: (1) a patch-wise training and stitching strategy for scaling to wide-field imaging and (2) a nonlinear arcsinh-based intensity transformation to manage high dynamic range. We conduct comprehensive evaluations using the T-RECS simulation suite with realistic sky models and point spead functions (PSF), and demonstrate that our approach significantly improves reconstruction quality and robustness. We test the model on realistic simulated strong gravitational lenses and show that lens systems with Einstein radii near the PSF scale can be recovered after deconvolution with our POLISH model, potentially yielding 10$\times$ more galaxy-galaxy lensing systems from the Deep Synoptic Array (DSA) survey than with image-plane CLEAN. Our results highlight the potential of DL models as practical, scalable tools for next-generation radio astronomy.

Ayush Varshney, Katherine L. Bouman, Berthy T. Feng

Ill-posed imaging inverse problems remain challenging due to the ambiguity in mapping degraded observations to clean images. Diffusion-based generative priors have recently shown promise, but typically rely on computationally intensive iterative sampling or per-instance optimization. Amortized variational inference frameworks address this inefficiency by learning a direct mapping from measurements to posteriors, enabling fast posterior sampling without requiring the optimization of a new posterior for every new set of measurements. However, they still struggle to reconstruct fine details and complex textures. To address this, we extend the amortized framework by injecting spatially adaptive perturbations to measurements during training, guided by uncertainty estimates, to emphasize learning in the most uncertain regions. Experiments on deblurring and super-resolution demonstrate that our method achieves superior or competitive performance to previous diffusion-based approaches, delivering more realistic reconstructions without the computational cost of iterative refinement.

Brandon Zhao, Yixuan Wang, Jonathan T. Barron et al.

We present an improved neural field architecture for solving partial differential equations (PDEs). Current physics-informed neural networks (PINNs) provide a flexible framework for solving PDEs, but they struggle to achieve highly accurate solutions and require computation that scales poorly with parameter count. Our model, which we call beignet (Bandlimited Embedding with Interpolated Grid Network), replaces the random Fourier feature embedding used by existing PINN models with a trainable multi-resolution Fourier feature pyramid. To query beignet at a continuous coordinate, we use Fourier interpolation at each level of the pyramid to return features at the input coordinate, and then decode this vector with a fully-connected neural network trunk. Our model provides multiple benefits: 1) Spatial derivatives can be computed efficiently by using the chain rule to compose derivatives of the neural network computed with automatic differentiation with derivatives of the feature grid computed spectrally by the Fast Fourier transform (FFT). 2) beignet can achieve higher accuracy in a compute-efficient manner by scaling the parameter count of this Fourier feature pyramid, instead of the less-efficient strategy of scaling the neural network architecture. 3) beignet can directly control the representation bandlimit, resulting in more stable optimization for difficult PDEs. We demonstrate that beignet finds significantly more accurate solutions on PDE benchmarks using fewer parameters than state-of-the-art PINN methods. We further evaluate beignet on the self-similar inviscid Burgers blowup problem and show that it can minimize residuals to near machine precision using Adam, an accuracy regime previously attained only by using computationally expensive higher-order optimizers.

Hongkai Zheng, Wenda Chu, Bingliang Zhang et al.

Plug-and-play diffusion priors (PnPDP) have emerged as a promising research direction for solving inverse problems. However, current studies primarily focus on natural image restoration, leaving the performance of these algorithms in scientific inverse problems largely unexplored. To address this gap, we introduce \textsc{InverseBench}, a framework that evaluates diffusion models across five distinct scientific inverse problems. These problems present unique structural challenges that differ from existing benchmarks, arising from critical scientific applications such as optical tomography, medical imaging, black hole imaging, seismology, and fluid dynamics. With \textsc{InverseBench}, we benchmark 14 inverse problem algorithms that use plug-and-play diffusion priors against strong, domain-specific baselines, offering valuable new insights into the strengths and weaknesses of existing algorithms. To facilitate further research and development, we open-source the codebase, along with datasets and pre-trained models, at https://devzhk.github.io/InverseBench/.

Adrian V. Dalca, Katherine L. Bouman, William T. Freeman et al.

We present an algorithm for creating high resolution anatomically plausible images consistent with acquired clinical brain MRI scans with large inter-slice spacing. Although large data sets of clinical images contain a wealth of information, time constraints during acquisition result in sparse scans that fail to capture much of the anatomy. These characteristics often render computational analysis impractical as many image analysis algorithms tend to fail when applied to such images. Highly specialized algorithms that explicitly handle sparse slice spacing do not generalize well across problem domains. In contrast, we aim to enable application of existing algorithms that were originally developed for high resolution research scans to significantly undersampled scans. We introduce a generative model that captures fine-scale anatomical structure across subjects in clinical image collections and derive an algorithm for filling in the missing data in scans with large inter-slice spacing. Our experimental results demonstrate that the resulting method outperforms state-of-the-art upsampling super-resolution techniques, and promises to facilitate subsequent analysis not previously possible with scans of this quality. Our implementation is freely available at https://github.com/adalca/papago .

Frederic Wang, Katherine L. Bouman

While diffusion priors generate high-quality posterior samples across many inverse problems, they are often trained on limited training sets or purely simulated data, thus inheriting the errors and biases of these underlying sources. Current approaches to finetuning diffusion models rely on a large number of observations with varying forward operators, which can be difficult to collect for many applications, and thus lead to overfitting when the measurement set is small. We propose a method for tuning a prior from only a single observation by combining existing diffusion priors into a single product-of-experts prior and identifying the exponents that maximize the Bayesian evidence. We validate our method on real-world inverse problems, including black hole imaging, where the true prior is unknown a priori, and image deblurring with text-conditioned priors. We find that the evidence is often maximized by priors that extend beyond those trained on a single dataset. By generalizing the prior through exponent weighting, our approach enables posterior sampling from both tempered and combined diffusion models, yielding more flexible priors that improve the trustworthiness of the resulting posterior image distribution.

Hyungjin Chung, Dohun Lee, Zihui Wu et al.

Compressed sensing MRI seeks to accelerate MRI acquisition processes by sampling fewer k-space measurements and then reconstructing the missing data algorithmically. The success of these approaches often relies on strong priors or learned statistical models. While recent diffusion model-based priors have shown great potential, previous methods typically ignore clinically available metadata (e.g. patient demographics, imaging parameters, slice-specific information). In practice, metadata contains meaningful cues about the anatomy and acquisition protocol, suggesting it could further constrain the reconstruction problem. In this work, we propose ContextMRI, a text-conditioned diffusion model for MRI that integrates granular metadata into the reconstruction process. We train a pixel-space diffusion model directly on minimally processed, complex-valued MRI images. During inference, metadata is converted into a structured text prompt and fed to the model via CLIP text embeddings. By conditioning the prior on metadata, we unlock more accurate reconstructions and show consistent gains across multiple datasets, acceleration factors, and undersampling patterns. Our experiments demonstrate that increasing the fidelity of metadata, ranging from slice location and contrast to patient age, sex, and pathology, systematically boosts reconstruction performance. This work highlights the untapped potential of leveraging clinical context for inverse problems and opens a new direction for metadata-driven MRI reconstruction.

Frederic Wang, Katherine L. Bouman

The choice of prior is central to solving ill-posed imaging inverse problems, making it essential to select one consistent with the measurements $y$ to avoid severe bias. In Bayesian inverse problems, this could be achieved by evaluating the model evidence $p(y \mid M)$ under different models $M$ that specify the prior and then selecting the one with the highest value. Diffusion models are the state-of-the-art approach to solving inverse problems with a data-driven prior; however, directly computing the model evidence with respect to a diffusion prior is intractable. Furthermore, most existing model evidence estimators require either many pointwise evaluations of the unnormalized prior density or an accurate clean prior score. We propose \method, an estimator of the model evidence of a diffusion prior by integrating over the time-marginals of posterior sampling methods. Our method leverages the large amount of intermediate samples naturally obtained during the reverse diffusion sampling process to obtain an accurate estimation of the model evidence using only a handful of posterior samples (e.g., 20). We also demonstrate how to implement our estimator in tandem with recent diffusion posterior sampling methods. Empirically, our estimator matches the model evidence when it can be computed analytically, and it is able to both select the correct diffusion model prior and diagnose prior misfit under different highly ill-conditioned, non-linear inverse problems, including a real-world black hole imaging problem.

Sreemanti Dey, Snigdha Saha, Berthy T. Feng et al.

Photoacoustic tomography (PAT) is a rapidly-evolving medical imaging modality that combines optical absorption contrast with ultrasound imaging depth. One challenge in PAT is image reconstruction with inadequate acoustic signals due to limited sensor coverage or due to the density of the transducer array. Such cases call for solving an ill-posed inverse reconstruction problem. In this work, we use score-based diffusion models to solve the inverse problem of reconstructing an image from limited PAT measurements. The proposed approach allows us to incorporate an expressive prior learned by a diffusion model on simulated vessel structures while still being robust to varying transducer sparsity conditions.

Brandon Y. Feng, Rodrigo Ferrer-Chávez, Aviad Levis et al.

Direct imaging of exoplanets is crucial for advancing our understanding of planetary systems beyond our solar system, but it faces significant challenges due to the high contrast between host stars and their planets. Wavefront aberrations introduce speckles in the telescope science images, which are patterns of diffracted starlight that can mimic the appearance of planets, complicating the detection of faint exoplanet signals. Traditional post-processing methods, operating primarily in the image intensity domain, do not integrate wavefront sensing data. These data, measured mainly for adaptive optics corrections, have been overlooked as a potential resource for post-processing, partly due to the challenge of the evolving nature of wavefront aberrations. In this paper, we present a differentiable rendering approach that leverages these wavefront sensing data to improve exoplanet detection. Our differentiable renderer models wave-based light propagation through a coronagraphic telescope system, allowing gradient-based optimization to significantly improve starlight subtraction and increase sensitivity to faint exoplanets. Simulation experiments based on the James Webb Space Telescope configuration demonstrate the effectiveness of our approach, achieving substantial improvements in contrast and planet detection limits. Our results showcase how the computational advancements enabled by differentiable rendering can revitalize previously underexploited wavefront data, opening new avenues for enhancing exoplanet imaging and characterization.

Brandon Zhao, Aviad Levis, Liam Connor et al.

Weak gravitational lensing is the slight distortion of galaxy shapes caused primarily by the gravitational effects of dark matter in the universe. In our work, we seek to invert the weak lensing signal from 2D telescope images to reconstruct a 3D map of the universe's dark matter field. While inversion typically yields a 2D projection of the dark matter field, accurate 3D maps of the dark matter distribution are essential for localizing structures of interest and testing theories of our universe. However, 3D inversion poses significant challenges. First, unlike standard 3D reconstruction that relies on multiple viewpoints, in this case, images are only observed from a single viewpoint. This challenge can be partially addressed by observing how galaxy emitters throughout the volume are lensed. However, this leads to the second challenge: the shapes and exact locations of unlensed galaxies are unknown, and can only be estimated with a very large degree of uncertainty. This introduces an overwhelming amount of noise which nearly drowns out the lensing signal completely. Previous approaches tackle this by imposing strong assumptions about the structures in the volume. We instead propose a methodology using a gravitationally-constrained neural field to flexibly model the continuous matter distribution. We take an analysis-by-synthesis approach, optimizing the weights of the neural network through a fully differentiable physical forward model to reproduce the lensing signal present in image measurements. We showcase our method on simulations, including realistic simulated measurements of dark matter distributions that mimic data from upcoming telescope surveys. Our results show that our method can not only outperform previous methods, but importantly is also able to recover potentially surprising dark matter structures.

Bingliang Zhang, Zihui Wu, Berthy T. Feng et al.

Reconstructing spatially and temporally coherent videos from time-varying measurements is a fundamental challenge in many scientific domains. A major difficulty arises from the sparsity of measurements, which hinders accurate recovery of temporal dynamics. Existing image diffusion-based methods rely on extracting temporal consistency directly from measurements, limiting their effectiveness on scientific tasks with high spatiotemporal uncertainty. We address this difficulty by proposing a plug-and-play framework that incorporates a learned spatiotemporal diffusion prior. Due to its plug-and-play nature, our framework can be flexibly applied to different video inverse problems without the need for task-specific design and temporal heuristics. We further demonstrate that a spatiotemporal diffusion model can be trained efficiently with limited video data. We validate our approach on two challenging scientific video reconstruction tasks: black hole video reconstruction and dynamic MRI. While baseline methods struggle to provide temporally coherent reconstructions, our approach achieves significantly improved recovery of the spatiotemporal structure of the underlying ground truth videos.

Alexander C. Ogren, Berthy T. Feng, Jihoon Ahn et al.

Wave propagation on the surface of a material contains information about physical properties beneath its surface. We propose a method for inferring the thickness and stiffness of a structure from just a video of waves on its surface. Our method works by extracting a dispersion relation from the video and then solving a physics-based optimization problem to find the best-fitting thickness and stiffness parameters. We validate our method on both simulated and real data, in both cases showing strong agreement with ground-truth measurements. Our technique provides a proof-of-concept for at-home health monitoring of medically-informative tissue properties, and it is further applicable to fields such as human-computer interaction.

Berthy T. Feng, Ricardo Baptista, Katherine L. Bouman

Diffusion models excel at creating visually-convincing images, but they often struggle to meet subtle constraints inherent in the training data. Such constraints could be physics-based (e.g., satisfying a PDE), geometric (e.g., respecting symmetry), or semantic (e.g., including a particular number of objects). When the training data all satisfy a certain constraint, enforcing this constraint on a diffusion model makes it more reliable for generating valid synthetic data and solving constrained inverse problems. However, existing methods for constrained diffusion models are restricted in the constraints they can handle. For instance, recent work proposed to learn mirror diffusion models (MDMs), but analytical mirror maps only exist for convex constraints and can be challenging to derive. We propose neural approximate mirror maps (NAMMs) for general, possibly non-convex constraints. Our approach only requires a differentiable distance function from the constraint set. We learn an approximate mirror map that transforms data into an unconstrained space and a corresponding approximate inverse that maps data back to the constraint set. A generative model, such as an MDM, can then be trained in the learned mirror space and its samples restored to the constraint set by the inverse map. We validate our approach on a variety of constraints, showing that compared to an unconstrained diffusion model, a NAMM-based MDM substantially improves constraint satisfaction. We also demonstrate how existing diffusion-based inverse-problem solvers can be easily applied in the learned mirror space to solve constrained inverse problems.

Berthy T. Feng, Katherine L. Bouman, William T. Freeman

Reconstructing images from the Event Horizon Telescope (EHT) observations of M87*, the supermassive black hole at the center of the galaxy M87, depends on a prior to impose desired image statistics. However, given the impossibility of directly observing black holes, there is no clear choice for a prior. We present a framework for flexibly designing a range of priors, each bringing different biases to the image reconstruction. These priors can be weak (e.g., impose only basic natural-image statistics) or strong (e.g., impose assumptions of black-hole structure). Our framework uses Bayesian inference with score-based priors, which are data-driven priors arising from a deep generative model that can learn complicated image distributions. Using our Bayesian imaging approach with sophisticated data-driven priors, we can assess how visual features and uncertainty of reconstructed images change depending on the prior. In addition to simulated data, we image the real EHT M87* data and discuss how recovered features are influenced by the choice of prior.

He Sun, Katherine L. Bouman, Paul Tiede et al.

Inference is crucial in modern astronomical research, where hidden astrophysical features and patterns are often estimated from indirect and noisy measurements. Inferring the posterior of hidden features, conditioned on the observed measurements, is essential for understanding the uncertainty of results and downstream scientific interpretations. Traditional approaches for posterior estimation include sampling-based methods and variational inference. However, sampling-based methods are typically slow for high-dimensional inverse problems, while variational inference often lacks estimation accuracy. In this paper, we propose alpha-DPI, a deep learning framework that first learns an approximate posterior using alpha-divergence variational inference paired with a generative neural network, and then produces more accurate posterior samples through importance re-weighting of the network samples. It inherits strengths from both sampling and variational inference methods: it is fast, accurate, and scalable to high-dimensional problems. We apply our approach to two high-impact astronomical inference problems using real data: exoplanet astrometry and black hole feature extraction.

Divya Varadarajan, Katherine L. Bouman, Andre van der Kouwe et al.

In neuroimaging, MRI tissue properties characterize underlying neurobiology, provide quantitative biomarkers for neurological disease detection and analysis, and can be used to synthesize arbitrary MRI contrasts. Estimating tissue properties from a single scan session using a protocol available on all clinical scanners promises to reduce scan time and cost, enable quantitative analysis in routine clinical scans and provide scan-independent biomarkers of disease. However, existing tissue properties estimation methods - most often $\mathbf{T_1}$ relaxation, $\mathbf{T_2^*}$ relaxation, and proton density ($\mathbf{PD}$) - require data from multiple scan sessions and cannot estimate all properties from a single clinically available MRI protocol such as the multiecho MRI scan. In addition, the widespread use of non-standard acquisition parameters across clinical imaging sites require estimation methods that can generalize across varying scanner parameters. However, existing learning methods are acquisition protocol specific and cannot estimate from heterogenous clinical data from different imaging sites. In this work we propose an unsupervised deep-learning strategy that employs MRI physics to estimate all three tissue properties from a single multiecho MRI scan session, and generalizes across varying acquisition parameters. The proposed strategy optimizes accurate synthesis of new MRI contrasts from estimated latent tissue properties, enabling unsupervised training, we also employ random acquisition parameters during training to achieve acquisition generalization. We provide the first demonstration of estimating all tissue properties from a single multiecho scan session. We demonstrate improved accuracy and generalizability for tissue property estimation and MRI synthesis.

Tianwei Yin, Zihui Wu, He Sun et al.

Accelerated MRI shortens acquisition time by subsampling in the measurement $κ$-space. Recovering a high-fidelity anatomical image from subsampled measurements requires close cooperation between two components: (1) a sampler that chooses the subsampling pattern and (2) a reconstructor that recovers images from incomplete measurements. In this paper, we leverage the sequential nature of MRI measurements, and propose a fully differentiable framework that jointly learns a sequential sampling policy simultaneously with a reconstruction strategy. This co-designed framework is able to adapt during acquisition in order to capture the most informative measurements for a particular target. Experimental results on the fastMRI knee dataset demonstrate that the proposed approach successfully utilizes intermediate information during the sampling process to boost reconstruction performance. In particular, our proposed method can outperform the current state-of-the-art learned $κ$-space sampling baseline on over 96% of test samples. We also investigate the individual and collective benefits of the sequential sampling and co-design strategies.

Berthy T. Feng, Alexander C. Ogren, Chiara Daraio et al.

An object's interior material properties, while invisible to the human eye, determine motion observed on its surface. We propose an approach that estimates heterogeneous material properties of an object from a monocular video of its surface vibrations. Specifically, we show how to estimate Young's modulus and density throughout a 3D object with known geometry. Knowledge of how these values change across the object is useful for simulating its motion and characterizing any defects. Traditional non-destructive testing approaches, which often require expensive instruments, generally estimate only homogenized material properties or simply identify the presence of defects. In contrast, our approach leverages monocular video to (1) identify image-space modes from an object's sub-pixel motion, and (2) directly infer spatially-varying Young's modulus and density values from the observed modes. We demonstrate our approach on both simulated and real videos.

He Sun, Katherine L. Bouman

Computational image reconstruction algorithms generally produce a single image without any measure of uncertainty or confidence. Regularized Maximum Likelihood (RML) and feed-forward deep learning approaches for inverse problems typically focus on recovering a point estimate. This is a serious limitation when working with underdetermined imaging systems, where it is conceivable that multiple image modes would be consistent with the measured data. Characterizing the space of probable images that explain the observational data is therefore crucial. In this paper, we propose a variational deep probabilistic imaging approach to quantify reconstruction uncertainty. Deep Probabilistic Imaging (DPI) employs an untrained deep generative model to estimate a posterior distribution of an unobserved image. This approach does not require any training data; instead, it optimizes the weights of a neural network to generate image samples that fit a particular measurement dataset. Once the network weights have been learned, the posterior distribution can be efficiently sampled. We demonstrate this approach in the context of interferometric radio imaging, which is used for black hole imaging with the Event Horizon Telescope, and compressed sensing Magnetic Resonance Imaging (MRI).

He Sun, Adrian V. Dalca, Katherine L. Bouman

Optimized sensing is important for computational imaging in low-resource environments, when images must be recovered from severely limited measurements. In this paper, we propose a physics-constrained, fully differentiable, autoencoder that learns a probabilistic sensor-sampling strategy for optimized sensor design. The proposed method learns a system's preferred sampling distribution that characterizes the correlations between different sensor selections as a binary, fully-connected Ising model. The learned probabilistic model is achieved by using a Gibbs sampling inspired network architecture, and is trained end-to-end with a reconstruction network for efficient co-design. The proposed framework is applicable to sensor selection problems in a variety of computational imaging applications. In this paper, we demonstrate the approach in the context of a very-long-baseline-interferometry (VLBI) array design task, where sensor correlations and atmospheric noise present unique challenges. We demonstrate results broadly consistent with expectation, and draw attention to particular structures preferred in the telescope array geometry that can be leveraged to plan future observations and design array expansions.

Tianfan Xue, Jiajun Wu, Katherine L. Bouman et al.

We study the problem of synthesizing a number of likely future frames from a single input image. In contrast to traditional methods that have tackled this problem in a deterministic or non-parametric way, we propose to model future frames in a probabilistic manner. Our probabilistic model makes it possible for us to sample and synthesize many possible future frames from a single input image. To synthesize realistic movement of objects, we propose a novel network structure, namely a Cross Convolutional Network; this network encodes image and motion information as feature maps and convolutional kernels, respectively. In experiments, our model performs well on synthetic data, such as 2D shapes and animated game sprites, and on real-world video frames. We present analyses of the learned network representations, showing it is implicitly learning a compact encoding of object appearance and motion. We also demonstrate a few of its applications, including visual analogy-making and video extrapolation.

Katherine L. Bouman, Michael D. Johnson, Adrian V. Dalca et al.

Very long baseline interferometry (VLBI) makes it possible to recover images of astronomical sources with extremely high angular resolution. Most recently, the Event Horizon Telescope (EHT) has extended VLBI to short millimeter wavelengths with a goal of achieving angular resolution sufficient for imaging the event horizons of nearby supermassive black holes. VLBI provides measurements related to the underlying source image through a sparse set spatial frequencies. An image can then be recovered from these measurements by making assumptions about the underlying image. One of the most important assumptions made by conventional imaging methods is that over the course of a night's observation the image is static. However, for quickly evolving sources, such as the galactic center's supermassive black hole (Sgr A*) targeted by the EHT, this assumption is violated and these conventional imaging approaches fail. In this work we propose a new way to model VLBI measurements that allows us to recover both the appearance and dynamics of an evolving source by reconstructing a video rather than a static image. By modeling VLBI measurements using a Gaussian Markov Model, we are able to propagate information across observations in time to reconstruct a video, while simultaneously learning about the dynamics of the source's emission region. We demonstrate our proposed Expectation-Maximization (EM) algorithm, StarWarps, on realistic synthetic observations of black holes, and show how it substantially improves results compared to conventional imaging algorithms. Additionally, we demonstrate StarWarps on real VLBI data of the M87 Jet from the VLBA.

Suhas Sreehari, S. V. Venkatakrishnan, Katherine L. Bouman et al.

Perhaps surprisingly, the total electron microscopy (EM) data collected to date is less than a cubic millimeter. Consequently, there is an enormous demand in the materials and biological sciences to image at greater speed and lower dosage, while maintaining resolution. Traditional EM imaging based on homogeneous raster-order scanning severely limits the volume of high-resolution data that can be collected, and presents a fundamental limitation to understanding physical processes such as material deformation, crack propagation, and pyrolysis. We introduce a novel multi-resolution data fusion (MDF) method for super-resolution computational EM. Our method combines innovative data acquisition with novel algorithmic techniques to dramatically improve the resolution/volume/speed trade-off. The key to our approach is to collect the entire sample at low resolution, while simultaneously collecting a small fraction of data at high resolution. The high-resolution measurements are then used to create a material-specific patch-library that is used within the "plug-and-play" framework to dramatically improve super-resolution of the low-resolution data. We present results using FEI electron microscope data that demonstrate super-resolution factors of 4x, 8x, and 16x, while substantially maintaining high image quality and reducing dosage.

Tianfan Xue, Jiajun Wu, Katherine L. Bouman et al.

We study the problem of synthesizing a number of likely future frames from a single input image. In contrast to traditional methods, which have tackled this problem in a deterministic or non-parametric way, we propose a novel approach that models future frames in a probabilistic manner. Our probabilistic model makes it possible for us to sample and synthesize many possible future frames from a single input image. Future frame synthesis is challenging, as it involves low- and high-level image and motion understanding. We propose a novel network structure, namely a Cross Convolutional Network to aid in synthesizing future frames; this network structure encodes image and motion information as feature maps and convolutional kernels, respectively. In experiments, our model performs well on synthetic data, such as 2D shapes and animated game sprites, as well as on real-wold videos. We also show that our model can be applied to tasks such as visual analogy-making, and present an analysis of the learned network representations.

Katherine L. Bouman, Michael D. Johnson, Daniel Zoran et al.

Very long baseline interferometry (VLBI) is a technique for imaging celestial radio emissions by simultaneously observing a source from telescopes distributed across Earth. The challenges in reconstructing images from fine angular resolution VLBI data are immense. The data is extremely sparse and noisy, thus requiring statistical image models such as those designed in the computer vision community. In this paper we present a novel Bayesian approach for VLBI image reconstruction. While other methods often require careful tuning and parameter selection for different types of data, our method (CHIRP) produces good results under different settings such as low SNR or extended emission. The success of our method is demonstrated on realistic synthetic experiments as well as publicly available real data. We present this problem in a way that is accessible to members of the community, and provide a dataset website (vlbiimaging.csail.mit.edu) that facilitates controlled comparisons across algorithms.