Yutaka Sasaki

Hein Htet, Amgad Ahmed Ali Ibrahim, Yutaka Sasaki et al.

The oxygen reduction reaction (ORR) catalyst plays a critical role in enhancing fuel cell efficiency, making it a key focus in material science research. However, extracting structured information about ORR catalysts from vast scientific literature remains a significant challenge due to the complexity and diversity of textual data. In this study, we propose a named entity recognition (NER) and relation extraction (RE) approach using DyGIE++ with multiple pre-trained BERT variants, including MatSciBERT and PubMedBERT, to extract ORR catalyst-related information from the scientific literature, which is compiled into a fuel cell corpus for materials informatics (FC-CoMIcs). A comprehensive dataset was constructed manually by identifying 12 critical entities and two relationship types between pairs of the entities. Our methodology involves data annotation, integration, and fine-tuning of transformer-based models to enhance information extraction accuracy. We assess the impact of different BERT variants on extraction performance and investigate the effects of annotation consistency. Experimental evaluations demonstrate that the fine-tuned PubMedBERT model achieves the highest NER F1-score of 82.19% and the MatSciBERT model attains the best RE F1-score of 66.10%. Furthermore, the comparison with human annotators highlights the reliability of fine-tuned models for ORR catalyst extraction, demonstrating their potential for scalable and automated literature analysis. The results indicate that domain-specific BERT models outperform general scientific models like BlueBERT for ORR catalyst extraction.

Kohei Makino, Makoto Miwa, Yutaka Sasaki

This paper addresses a crucial challenge in retrieval-augmented generation-based relation extractors; the end-to-end training is not applicable to conventional retrieval-augmented generation due to the non-differentiable nature of instance retrieval. This problem prevents the instance retrievers from being optimized for the relation extraction task, and conventionally it must be trained with an objective different from that for relation extraction. To address this issue, we propose a novel End-to-end Trainable Retrieval-Augmented Generation (ETRAG), which allows end-to-end optimization of the entire model, including the retriever, for the relation extraction objective by utilizing a differentiable selection of the $k$ nearest instances. We evaluate the relation extraction performance of ETRAG on the TACRED dataset, which is a standard benchmark for relation extraction. ETRAG demonstrates consistent improvements against the baseline model as retrieved instances are added. Furthermore, the analysis of instances retrieved by the end-to-end trained retriever confirms that the retrieved instances contain common relation labels or entities with the query and are specialized for the target task. Our findings provide a promising foundation for future research on retrieval-augmented generation and the broader applications of text generation in Natural Language Processing.

Hayato Futase, Tomoki Tsujimura, Tetsuya Kajimoto et al.

Generative Adversarial Networks (GANs) have shown remarkable successes in generating realistic images and interpolating changes between images. Existing models, however, do not take into account physical contexts behind images in generating the images, which may cause unrealistic changes. Furthermore, it is difficult to generate the changes at a specific timing and they often do not match with actual changes. This paper proposes a novel GAN, named Physical Context and Timing aware sequence generating GANs (PCTGAN), that generates an image in a sequence at a specific timing between two images with considering physical contexts behind them. Our method consists of three components: an encoder, a generator, and a discriminator. The encoder estimates latent vectors from the beginning and ending images, their timings, and a target timing. The generator generates images and the physical contexts at the beginning, ending, and target timing from the corresponding latent vectors. The discriminator discriminates whether the generated images and contexts are real or not. In the experiments, PCTGAN is applied to a data set of sequential changes of shapes in die forging processes. We show that both timing and physical contexts are effective in generating sequential images.

Kohei Makino, Makoto Miwa, Yutaka Sasaki

In this paper, we propose a novel edge-editing approach to extract relation information from a document. We treat the relations in a document as a relation graph among entities in this approach. The relation graph is iteratively constructed by editing edges of an initial graph, which might be a graph extracted by another system or an empty graph. The way to edit edges is to classify them in a close-first manner using the document and temporally-constructed graph information; each edge is represented with a document context information by a pretrained transformer model and a graph context information by a graph convolutional neural network model. We evaluate our approach on the task to extract material synthesis procedures from materials science texts. The experimental results show the effectiveness of our approach in editing the graphs initialized by our in-house rule-based system and empty graphs.

Masaki Asada, Makoto Miwa, Yutaka Sasaki

We propose a novel neural method to extract drug-drug interactions (DDIs) from texts using external drug molecular structure information. We encode textual drug pairs with convolutional neural networks and their molecular pairs with graph convolutional networks (GCNs), and then we concatenate the outputs of these two networks. In the experiments, we show that GCNs can predict DDIs from the molecular structures of drugs in high accuracy and the molecular information can enhance text-based DDI extraction by 2.39 percent points in the F-score on the DDIExtraction 2013 shared task data set.

Takuma Yoneda, Koki Mori, Makoto Miwa et al.

We propose a novel embedding model that represents relationships among several elements in bibliographic information with high representation ability and flexibility. Based on this model, we present a novel search system that shows the relationships among the elements in the ACL Anthology Reference Corpus. The evaluation results show that our model can achieve a high prediction ability and produce reasonable search results.

Heejin Choi, Yutaka Sasaki, Nathan Srebro

We present improved methods of using structured SVMs in a large-scale hierarchical classification problem, that is when labels are leaves, or sets of leaves, in a tree or a DAG. We examine the need to normalize both the regularization and the margin and show how doing so significantly improves performance, including allowing achieving state-of-the-art results where unnormalized structured SVMs do not perform better than flat models. We also describe a further extension of hierarchical SVMs that highlight the connection between hierarchical SVMs and matrix factorization models.