Hasaan Maqsood

Hasaan Maqsood, Saif Ur Rehman Khan, Sebastian Vollmer et al.

Diabetic retinopathy screening traditionally relies on fundus photography, requiring specialized equipment and expertise often unavailable in primary care and resource limited settings. We developed and validated a deep learning (DL) system for automated diabetic classification using anterior segment ocular imaging a readily accessible alternative utilizing standard photography equipment. The system leverages visible biomarkers in the iris, sclera, and conjunctiva that correlate with systemic diabetic status. We systematically evaluated five contemporary architectures (EfficientNet-V2-S with self-supervised learning (SSL), Vision Transformer, Swin Transformer, ConvNeXt-Base, and ResNet-50) on 2,640 clinically annotated anterior segment images spanning Normal, Controlled Diabetic, and Uncontrolled Diabetic categories. A tailored preprocessing pipeline combining specular reflection mitigation and contrast limited adaptive histogram equalization (CLAHE) was implemented to enhance subtle vascular and textural patterns critical for classification. SSL using SimCLR on domain specific ocular images substantially improved model performance.EfficientNet-V2-S with SSL achieved optimal performance with an F1-score of 98.21%, precision of 97.90%, and recall of 98.55% a substantial improvement over ImageNet only initialization (94.63% F1). Notably, the model attained near perfect precision (100%) for Normal classification, critical for minimizing unnecessary clinical referrals.

Hasaan Maqsood, Saif Ur Rehman Khan, Sebastian Vollmer et al.

Accurate segmentation of brain tumour sub-regions from multi-parametric MRI is critical for treatment planning yet remains challenging due to morphological variability, class imbalance, and overlapping appearances of tumour regions across imaging sequences. We propose SegGuidedNet, a three-dimensional residual encoder--decoder network introducing a novel SegAttentionGate module that explicitly supervises the decoder to produce spatially discriminative attention maps for each tumour sub-region necrotic core, peritumoral oedema, and enhancing tumour via a lightweight auxiliary loss, adding less than 0.2% parameter overhead. This sub-region supervision maintains decoder discriminability between visually ambiguous classes while providing free-of-cost spatial interpretability at inference without any post-hoc explanation method. Evaluated independently on BraTS2021 and BraTS2023 GLI across 251 held-out subjects each, SegGuidedNet achieves mean Dice of 0.905 (ET= 0.873, TC=0.906, WT=0.935) and 0.897 (ET=0.859, TC=0.902, WT=0.931) respectively, surpassing ensemble-based nnU-Net and HNF-Netv2 as a single model and approaching Swin UNETR a 10-model ensemble within 2--4 Dice points at a fraction of the inference cost. The consistency of results across two benchmark editions further confirms the generalisability of the proposed approach, offering competitive accuracy with built-in interpretability in a lightweight, clinically practical framework.

Hasaan Maqsood, Saif Ur Rehman Khan

Accurate prediction of recurrence in clear cell renal cell carcinoma (ccRCC) remains a major clinical challenge due to the disease complex molecular, pathological, and clinical heterogeneity. Traditional prognostic models, which rely on single data modalities such as radiology, histopathology, or genomics, often fail to capture the full spectrum of disease complexity, resulting in suboptimal predictive accuracy. This study aims to overcome these limitations by proposing a deep learning (DL) framework that integrates multimodal data, including CT, MRI, histopathology whole slide images (WSI), clinical data, and genomic profiles, to improve the prediction of ccRCC recurrence and enhance clinical decision-making. The proposed framework utilizes a comprehensive dataset curated from multiple publicly available sources, including TCGA, TCIA, and CPTAC. To process the diverse modalities, domain-specific models are employed: CLAM, a ResNet50-based model, is used for histopathology WSIs, while MeD-3D, a pre-trained 3D-ResNet18 model, processes CT and MRI images. For structured clinical and genomic data, a multi-layer perceptron (MLP) is used. These models are designed to extract deep feature embeddings from each modality, which are then fused through an early and late integration architecture. This fusion strategy enables the model to combine complementary information from multiple sources. Additionally, the framework is designed to handle incomplete data, a common challenge in clinical settings, by enabling inference even when certain modalities are missing.