Young Jin Kim

Abdelrahman Abouelenin, Atabak Ashfaq, Adam Atkinson et al. · microsoft-research

We introduce Phi-4-Mini and Phi-4-Multimodal, compact yet highly capable language and multimodal models. Phi-4-Mini is a 3.8-billion-parameter language model trained on high-quality web and synthetic data, significantly outperforming recent open-source models of similar size and matching the performance of models twice its size on math and coding tasks requiring complex reasoning. This achievement is driven by a carefully curated synthetic data recipe emphasizing high-quality math and coding datasets. Compared to its predecessor, Phi-3.5-Mini, Phi-4-Mini features an expanded vocabulary size of 200K tokens to better support multilingual applications, as well as group query attention for more efficient long-sequence generation. Phi-4-Multimodal is a multimodal model that integrates text, vision, and speech/audio input modalities into a single model. Its novel modality extension approach leverages LoRA adapters and modality-specific routers to allow multiple inference modes combining various modalities without interference. For example, it now ranks first in the OpenASR leaderboard to date, although the LoRA component of the speech/audio modality has just 460 million parameters. Phi-4-Multimodal supports scenarios involving (vision + language), (vision + speech), and (speech/audio) inputs, outperforming larger vision-language and speech-language models on a wide range of tasks. Additionally, we experiment to further train Phi-4-Mini to enhance its reasoning capabilities. Despite its compact 3.8-billion-parameter size, this experimental version achieves reasoning performance on par with or surpassing significantly larger models, including DeepSeek-R1-Distill-Qwen-7B and DeepSeek-R1-Distill-Llama-8B.

Young Jin Kim, Rawn Henry, Raffy Fahim et al. · microsoft-research

Large Language Models (LLMs) have achieved state-of-the-art performance across various language tasks but pose challenges for practical deployment due to their substantial memory requirements. Furthermore, the latest generative models suffer from high inference costs caused by the memory bandwidth bottleneck in the auto-regressive decoding process. To address these issues, we propose an efficient weight-only quantization method that reduces memory consumption and accelerates inference for LLMs. To ensure minimal quality degradation, we introduce a simple and effective heuristic approach that utilizes only the model weights of a pre-trained model. This approach is applicable to both Mixture-of-Experts (MoE) and dense models without requiring additional fine-tuning. To demonstrate the effectiveness of our proposed method, we first analyze the challenges and issues associated with LLM quantization. Subsequently, we present our heuristic approach, which adaptively finds the granularity of quantization, effectively addressing these problems. Furthermore, we implement highly efficient GPU GEMMs that perform on-the-fly matrix multiplication and dequantization, supporting the multiplication of fp16 or bf16 activations with int8 or int4 weights. We evaluate our approach on large-scale open source models such as OPT-175B and internal MoE models, showcasing minimal accuracy loss while achieving up to 3.65 times higher throughput on the same number of GPUs.

Rui Liu, Young Jin Kim, Alexandre Muzio et al. · microsoft-research

Sparsely activated transformers, such as Mixture of Experts (MoE), have received great interest due to their outrageous scaling capability which enables dramatical increases in model size without significant increases in computational cost. To achieve this, MoE models replace the feedforward sub-layer with Mixture-of-Experts sub-layer in transformers and use a gating network to route each token to its assigned experts. Since the common practice for efficient training of such models requires distributing experts and tokens across different machines, this routing strategy often incurs huge cross-machine communication cost because tokens and their assigned experts likely reside in different machines. In this paper, we propose \emph{Gating Dropout}, which allows tokens to ignore the gating network and stay at their local machines, thus reducing the cross-machine communication. Similar to traditional dropout, we also show that Gating Dropout has a regularization effect during training, resulting in improved generalization performance. We validate the effectiveness of Gating Dropout on multilingual machine translation tasks. Our results demonstrate that Gating Dropout improves a state-of-the-art MoE model with faster wall-clock time convergence rates and better BLEU scores for a variety of model sizes and datasets.

Amr Hendy, Mohamed Abdelrehim, Amr Sharaf et al. · microsoft-research

Generative Pre-trained Transformer (GPT) models have shown remarkable capabilities for natural language generation, but their performance for machine translation has not been thoroughly investigated. In this paper, we present a comprehensive evaluation of GPT models for machine translation, covering various aspects such as quality of different GPT models in comparison with state-of-the-art research and commercial systems, effect of prompting strategies, robustness towards domain shifts and document-level translation. We experiment with eighteen different translation directions involving high and low resource languages, as well as non English-centric translations, and evaluate the performance of three GPT models: ChatGPT, GPT3.5 (text-davinci-003), and text-davinci-002. Our results show that GPT models achieve very competitive translation quality for high resource languages, while having limited capabilities for low resource languages. We also show that hybrid approaches, which combine GPT models with other translation systems, can further enhance the translation quality. We perform comprehensive analysis and human evaluation to further understand the characteristics of GPT translations. We hope that our paper provides valuable insights for researchers and practitioners in the field and helps to better understand the potential and limitations of GPT models for translation.

Ganesh Jawahar, Subhabrata Mukherjee, Xiaodong Liu et al. · microsoft-research

Mixture-of-Expert (MoE) models have obtained state-of-the-art performance in Neural Machine Translation (NMT) tasks. Existing works in MoE mostly consider a homogeneous design where the same number of experts of the same size are placed uniformly throughout the network. Furthermore, existing MoE works do not consider computational constraints (e.g., FLOPs, latency) to guide their design. To this end, we develop AutoMoE -- a framework for designing heterogeneous MoE's under computational constraints. AutoMoE leverages Neural Architecture Search (NAS) to obtain efficient sparse MoE sub-transformers with 4x inference speedup (CPU) and FLOPs reduction over manually designed Transformers, with parity in BLEU score over dense Transformer and within 1 BLEU point of MoE SwitchTransformer, on aggregate over benchmark datasets for NMT. Heterogeneous search space with dense and sparsely activated Transformer modules (e.g., how many experts? where to place them? what should be their sizes?) allows for adaptive compute -- where different amounts of computations are used for different tokens in the input. Adaptivity comes naturally from routing decisions which send tokens to experts of different sizes. AutoMoE code, data, and trained models are available at https://aka.ms/AutoMoE.

Hai Pham, Young Jin Kim, Subhabrata Mukherjee et al. · cmu, microsoft-research

Mixture-of-experts (MoE) architecture has been proven a powerful method for diverse tasks in training deep models in many applications. However, current MoE implementations are task agnostic, treating all tokens from different tasks in the same manner. In this work, we instead design a novel method that incorporates task information into MoE models at different granular levels with shared dynamic task-based adapters. Our experiments and analysis show the advantages of our approaches over the dense and canonical MoE models on multi-task multilingual machine translations. With task-specific adapters, our models can additionally generalize to new tasks efficiently.

Haoran Xu, Young Jin Kim, Amr Sharaf et al. · microsoft-research

Generative Large Language Models (LLMs) have achieved remarkable advancements in various NLP tasks. However, these advances have not been reflected in the translation task, especially those with moderate model sizes (i.e., 7B or 13B parameters), which still lag behind conventional supervised encoder-decoder translation models. Previous studies have attempted to improve the translation capabilities of these moderate LLMs, but their gains have been limited. In this study, we propose a novel fine-tuning approach for LLMs that is specifically designed for the translation task, eliminating the need for the abundant parallel data that traditional translation models usually depend on. Our approach consists of two fine-tuning stages: initial fine-tuning on monolingual data followed by subsequent fine-tuning on a small set of high-quality parallel data. We introduce the LLM developed through this strategy as Advanced Language Model-based trAnslator (ALMA). Based on LLaMA-2 as our underlying model, our results show that the model can achieve an average improvement of more than 12 BLEU and 12 COMET over its zero-shot performance across 10 translation directions from the WMT'21 (2 directions) and WMT'22 (8 directions) test datasets. The performance is significantly better than all prior work and even superior to the NLLB-54B model and GPT-3.5-text-davinci-003, with only 7B or 13B parameters. This method establishes the foundation for a novel training paradigm in machine translation.

Liyuan Liu, Young Jin Kim, Shuohang Wang et al. · microsoft-research

Mixture-of-Experts (MoE) models scale more effectively than dense models due to sparse computation through expert routing, selectively activating only a small subset of expert modules. However, sparse computation challenges traditional training practices, as discrete expert routing hinders standard backpropagation and thus gradient-based optimization, which are the cornerstone of deep learning. To better pursue the scaling power of MoE, we introduce GRIN (GRadient-INformed MoE training), which incorporates sparse gradient estimation for expert routing and configures model parallelism to avoid token dropping. Applying GRIN to autoregressive language modeling, we develop a top-2 16$\times$3.8B MoE model. Our model, with only 6.6B activated parameters, outperforms a 7B dense model and matches the performance of a 14B dense model trained on the same data. Extensive evaluations across diverse tasks demonstrate the potential of GRIN to significantly enhance MoE efficacy, achieving 79.4 on MMLU, 83.7 on HellaSwag, 74.4 on HumanEval, and 58.9 on MATH.

Young Jin Kim, Raffy Fahim, Hany Hassan Awadalla · microsoft-research

Large Mixture of Experts (MoE) models could achieve state-of-the-art quality on various language tasks, including machine translation task, thanks to the efficient model scaling capability with expert parallelism. However, it has brought a fundamental issue of larger memory consumption and increased memory bandwidth bottleneck at deployment time. In this paper, we propose Mixture of Quantized Experts (MoQE) which is a simple weight-only quantization method applying ultra low-bit down to 2-bit quantizations only to expert weights for mitigating the increased memory and latency issues of MoE models. We show that low-bit quantization together with the MoE architecture delivers a reliable model performance while reducing the memory size significantly even without any additional training in most cases. In particular, expert layers in MoE models are much more robust to the quantization than conventional feedforward networks (FFN) layers. In our comprehensive analysis, we show that MoE models with 2-bit expert weights can deliver better model performance than the dense model trained on the same dataset. As a result of low-bit quantization, we show the model size can be reduced by 79.6% of the original half precision floating point (fp16) MoE model. Combined with an optimized GPU runtime implementation, it also achieves 1.24X speed-up on A100 GPUs.

Young Jin Kim, Rawn Henry, Raffy Fahim et al. · microsoft-research

Mixture of Experts (MoE) models with conditional execution of sparsely activated layers have enabled training models with a much larger number of parameters. As a result, these models have achieved significantly better quality on various natural language processing tasks including machine translation. However, it remains challenging to deploy such models in real-life scenarios due to the large memory requirements and inefficient inference. In this work, we introduce a highly efficient inference framework with several optimization approaches to accelerate the computation of sparse models and cut down the memory consumption significantly. While we achieve up to 26x speed-up in terms of throughput, we also reduce the model size almost to one eighth of the original 32-bit float model by quantizing expert weights into 4-bit integers. As a result, we are able to deploy 136x larger models with 27% less cost and significantly better quality compared to the existing solutions. This enables a paradigm shift in deploying large scale multilingual MoE transformers models replacing the traditional practice of distilling teacher models into dozens of smaller models per language or task.

Hossam Amer, Young Jin Kim, Mohamed Afify et al. · microsoft-research

Multilingual Neural Machine Translation has been showing great success using transformer models. Deploying these models is challenging because they usually require large vocabulary (vocab) sizes for various languages. This limits the speed of predicting the output tokens in the last vocab projection layer. To alleviate these challenges, this paper proposes a fast vocabulary projection method via clustering which can be used for multilingual transformers on GPUs. First, we offline split the vocab search space into disjoint clusters given the hidden context vector of the decoder output, which results in much smaller vocab columns for vocab projection. Second, at inference time, the proposed method predicts the clusters and candidate active tokens for hidden context vectors at the vocab projection. This paper also includes analysis of different ways of building these clusters in multilingual settings. Our results show end-to-end speed gains in float16 GPU inference up to 25% while maintaining the BLEU score and slightly increasing memory cost. The proposed method speeds up the vocab projection step itself by up to 2.6x. We also conduct an extensive human evaluation to verify the proposed method preserves the quality of the translations from the original model.

Marah Abdin, Jyoti Aneja, Hany Awadalla et al. · microsoft-research, stanford

We introduce phi-3-mini, a 3.8 billion parameter language model trained on 3.3 trillion tokens, whose overall performance, as measured by both academic benchmarks and internal testing, rivals that of models such as Mixtral 8x7B and GPT-3.5 (e.g., phi-3-mini achieves 69% on MMLU and 8.38 on MT-bench), despite being small enough to be deployed on a phone. Our training dataset is a scaled-up version of the one used for phi-2, composed of heavily filtered publicly available web data and synthetic data. The model is also further aligned for robustness, safety, and chat format. We also provide parameter-scaling results with a 7B, 14B models trained for 4.8T tokens, called phi-3-small, phi-3-medium, both significantly more capable than phi-3-mini (e.g., respectively 75%, 78% on MMLU, and 8.7, 8.9 on MT-bench). To enhance multilingual, multimodal, and long-context capabilities, we introduce three models in the phi-3.5 series: phi-3.5-mini, phi-3.5-MoE, and phi-3.5-Vision. The phi-3.5-MoE, a 16 x 3.8B MoE model with 6.6 billion active parameters, achieves superior performance in language reasoning, math, and code tasks compared to other open-source models of similar scale, such as Llama 3.1 and the Mixtral series, and on par with Gemini-1.5-Flash and GPT-4o-mini. Meanwhile, phi-3.5-Vision, a 4.2 billion parameter model derived from phi-3.5-mini, excels in reasoning tasks and is adept at handling both single-image and text prompts, as well as multi-image and text prompts.

HyunJin Kim, Young Jin Kim, JinYeong Bak

Pre-trained language models (PLMs) show impressive performance in various downstream NLP tasks. However, pre-training large language models demands substantial memory and training compute. Furthermore, due to the substantial resources required, many PLM weights are confidential. Consequently, users are compelled to share their data with model owners for fine-tuning specific tasks. To overcome the limitations, we introduce Plug-in External Memory Adaptation (PEMA), a Parameter-Efficient Fine-Tuning (PEFT) method, enabling PLM fine-tuning without requiring access to all the weights. PEMA integrates with context representations from test data during inference to perform downstream tasks. It uses external memory to store PLM-generated context representations mapped with target tokens. Our method utilizes weight matrices of LoRA-like bottlenecked adapter in the PLM's final layer to enhance efficiency. Our approach also includes Gradual Unrolling, a novel interpolation strategy to improve generation quality. We validate PEMA's effectiveness through experiments on syntactic and real datasets for machine translation and style transfer. Our findings show that PEMA outperforms other PEFT approaches in memory and latency efficiency for training, and also excels in maintaining sentence meaning and generating appropriate language and styles.

Liliang Ren, Congcong Chen, Haoran Xu et al.

Recent advances in language modeling have demonstrated the effectiveness of State Space Models (SSMs) for efficient sequence modeling. While hybrid architectures such as Samba and the decoder-decoder architecture, YOCO, have shown promising performance gains over Transformers, prior works have not investigated the efficiency potential of representation sharing between SSM layers. In this paper, we introduce the Gated Memory Unit (GMU), a simple yet effective mechanism for efficient memory sharing across layers. We apply it to create SambaY, a decoder-hybrid-decoder architecture that incorporates GMUs in the cross-decoder to share memory readout states from a Samba-based self-decoder. SambaY significantly enhances decoding efficiency, preserves linear pre-filling time complexity, and boosts long-context performance, all while eliminating the need for explicit positional encoding. Through extensive scaling experiments, we demonstrate that our model exhibits a significantly lower irreducible loss compared to a strong YOCO baseline, indicating superior performance scalability under large-scale compute regimes. Our largest model enhanced with Differential Attention, Phi4-mini-Flash-Reasoning, achieves significantly better performance than Phi4-mini-Reasoning on reasoning tasks such as Math500, AIME24/25, and GPQA Diamond without any reinforcement learning, while delivering up to 10x higher decoding throughput on 2K-length prompts with 32K generation length under the vLLM inference framework. We release our training codebase on open-source data at https://github.com/microsoft/ArchScale.

Jongwoo Ko, Sara Abdali, Young Jin Kim et al.

On-policy distillation is pivotal for transferring reasoning capabilities to capacity-constrained models, yet remains prone to instability and negative transfer. We show that on-policy distillation can be interpreted, both theoretically and empirically, as a form of policy optimization, where the teacher-student log-likelihood ratio acts as a token reward. From this insight, we introduce REOPOLD (Relaxed On-Policy Distillation) a framework that stabilizes optimization by relaxing the strict imitation constraints of standard on-policy distillation. Specifically, REOPOLD temperately and selectively leverages rewards from the teacher through mixture-based reward clipping, entropy-based token-level dynamic sampling, and a unified exploration-to-refinement training strategy. Empirically, REOPOLD surpasses its baselines with superior sample efficiency during training and enhanced test-time scaling at inference, across mathematical, visual, and agentic tool-use reasoning tasks. Specifically, REOPOLD outperforms recent RL approaches achieving 6.7~12x greater sample efficiency and enables a 7B student to match a 32B teacher in visual reasoning with a ~3.32x inference speedup.

Zichong Li, Chen Liang, Zixuan Zhang et al.

The Mixture of Experts (MoE) architecture has emerged as a powerful paradigm for scaling large language models (LLMs) while maintaining inference efficiency. However, their enormous memory requirements make them prohibitively expensive to fine-tune or deploy in resource-constrained environments. To address this challenge, we introduce SlimMoE, a multi-stage compression framework for transforming large MoE models into much smaller, efficient variants without incurring the prohibitive costs of training from scratch. Our method systematically reduces parameter counts by slimming experts and transferring knowledge through intermediate stages, effectively mitigating the performance degradation common in one-shot pruning approaches. Using this framework, we compress Phi 3.5-MoE (41.9B total/6.6B activated parameters) to create Phi-mini-MoE (7.6B total/2.4B activated parameters) and Phi-tiny-MoE (3.8B total/1.1B activated parameters) using only 400B tokens--less than 10% of the original model's training data. These compressed models can be fine-tuned on a single GPU (A100 for Phi-mini-MoE, A6000 for Phi-tiny-MoE), making them highly suitable for academic and resource-limited settings. Our experiments demonstrate that these compressed models outperform others of similar size and remain competitive with larger models. For instance, Phi-mini-MoE achieves similar or better performance to Phi-3-mini using only 2/3 of the activated parameters and yields comparable MMLU scores to Llama 3.1 8B despite having significantly lower latency. Our findings demonstrate that structured pruning combined with staged distillation offers an effective path to creating high-quality, compact MoE models, paving the way for broader adoption of MoE architectures. We make our models publicly available at https://huggingface.co/microsoft/Phi-mini-MoE-instruct and https://huggingface.co/microsoft/Phi-tiny-MoE-instruct .

Simiao Zuo, Xiaodong Liu, Jian Jiao et al.

Sparsely activated models (SAMs), such as Mixture-of-Experts (MoE), can easily scale to have outrageously large amounts of parameters without significant increase in computational cost. However, SAMs are reported to be parameter inefficient such that larger models do not always lead to better performance. While most on-going research focuses on improving SAMs models by exploring methods of routing inputs to experts, our analysis reveals that such research might not lead to the solution we expect, i.e., the commonly-used routing methods based on gating mechanisms do not work better than randomly routing inputs to experts. In this paper, we propose a new expert-based model, THOR (Transformer witH StOchastic ExpeRts). Unlike classic expert-based models, such as the Switch Transformer, experts in THOR are randomly activated for each input during training and inference. THOR models are trained using a consistency regularized loss, where experts learn not only from training data but also from other experts as teachers, such that all the experts make consistent predictions. We validate the effectiveness of THOR on machine translation tasks. Results show that THOR models are more parameter efficient in that they significantly outperform the Transformer and MoE models across various settings. For example, in multilingual translation, THOR outperforms the Switch Transformer by 2 BLEU scores, and obtains the same BLEU score as that of a state-of-the-art MoE model that is 18 times larger. Our code is publicly available at: https://github.com/microsoft/Stochastic-Mixture-of-Experts.

Young Jin Kim, Ammar Ahmad Awan, Alexandre Muzio et al.

The Mixture of Experts (MoE) models are an emerging class of sparsely activated deep learning models that have sublinear compute costs with respect to their parameters. In contrast with dense models, the sparse architecture of MoE offers opportunities for drastically growing model size with significant accuracy gain while consuming much lower compute budget. However, supporting large scale MoE training also has its own set of system and modeling challenges. To overcome the challenges and embrace the opportunities of MoE, we first develop a system capable of scaling MoE models efficiently to trillions of parameters. It combines multi-dimensional parallelism and heterogeneous memory technologies harmoniously with MoE to empower 8x larger models on the same hardware compared with existing work. Besides boosting system efficiency, we also present new training methods to improve MoE sample efficiency and leverage expert pruning strategy to improve inference time efficiency. By combining the efficient system and training methods, we are able to significantly scale up large multitask multilingual models for language generation which results in a great improvement in model accuracy. A model trained with 10 billion parameters on 50 languages can achieve state-of-the-art performance in Machine Translation (MT) and multilingual natural language generation tasks. The system support of efficient MoE training has been implemented and open-sourced with the DeepSpeed library.

Haoran Xu, Baolin Peng, Hany Awadalla et al. · microsoft-research

Chain-of-Thought (CoT) significantly enhances formal reasoning capabilities in Large Language Models (LLMs) by training them to explicitly generate intermediate reasoning steps. While LLMs readily benefit from such techniques, improving reasoning in Small Language Models (SLMs) remains challenging due to their limited model capacity. Recent work by Deepseek-R1 demonstrates that distillation from LLM-generated synthetic data can substantially improve the reasoning ability of SLM. However, the detailed modeling recipe is not disclosed. In this work, we present a systematic training recipe for SLMs that consists of four steps: (1) large-scale mid-training on diverse distilled long-CoT data, (2) supervised fine-tuning on high-quality long-CoT data, (3) Rollout DPO leveraging a carefully curated preference dataset, and (4) Reinforcement Learning (RL) with Verifiable Reward. We apply our method on Phi-4-Mini, a compact 3.8B-parameter model. The resulting Phi-4-Mini-Reasoning model exceeds, on math reasoning tasks, much larger reasoning models, e.g., outperforming DeepSeek-R1-Distill-Qwen-7B by 3.2 points and DeepSeek-R1-Distill-Llama-8B by 7.7 points on Math-500. Our results validate that a carefully designed training recipe, with large-scale high-quality CoT data, is effective to unlock strong reasoning capabilities even in resource-constrained small models.

Haoran Xu, Amr Sharaf, Yunmo Chen et al.

Moderate-sized large language models (LLMs) -- those with 7B or 13B parameters -- exhibit promising machine translation (MT) performance. However, even the top-performing 13B LLM-based translation models, like ALMA, does not match the performance of state-of-the-art conventional encoder-decoder translation models or larger-scale LLMs such as GPT-4. In this study, we bridge this performance gap. We first assess the shortcomings of supervised fine-tuning for LLMs in the MT task, emphasizing the quality issues present in the reference data, despite being human-generated. Then, in contrast to SFT which mimics reference translations, we introduce Contrastive Preference Optimization (CPO), a novel approach that trains models to avoid generating adequate but not perfect translations. Applying CPO to ALMA models with only 22K parallel sentences and 12M parameters yields significant improvements. The resulting model, called ALMA-R, can match or exceed the performance of the WMT competition winners and GPT-4 on WMT'21, WMT'22 and WMT'23 test datasets.

Young Jin Kim, Hany Hassan Awadalla

Transformer-based models are the state-of-the-art for Natural Language Understanding (NLU) applications. Models are getting bigger and better on various tasks. However, Transformer models remain computationally challenging since they are not efficient at inference-time compared to traditional approaches. In this paper, we present FastFormers, a set of recipes to achieve efficient inference-time performance for Transformer-based models on various NLU tasks. We show how carefully utilizing knowledge distillation, structured pruning and numerical optimization can lead to drastic improvements on inference efficiency. We provide effective recipes that can guide practitioners to choose the best settings for various NLU tasks and pretrained models. Applying the proposed recipes to the SuperGLUE benchmark, we achieve from 9.8x up to 233.9x speed-up compared to out-of-the-box models on CPU. On GPU, we also achieve up to 12.4x speed-up with the presented methods. We show that FastFormers can drastically reduce cost of serving 100 million requests from 4,223 USD to just 18 USD on an Azure F16s_v2 instance. This translates to a sustainable runtime by reducing energy consumption 6.9x - 125.8x according to the metrics used in the SustaiNLP 2020 shared task.

Robert Robinson, Vanya V. Valindria, Wenjia Bai et al.

Background: The trend towards large-scale studies including population imaging poses new challenges in terms of quality control (QC). This is a particular issue when automatic processing tools, e.g. image segmentation methods, are employed to derive quantitative measures or biomarkers for later analyses. Manual inspection and visual QC of each segmentation isn't feasible at large scale. However, it's important to be able to automatically detect when a segmentation method fails so as to avoid inclusion of wrong measurements into subsequent analyses which could lead to incorrect conclusions. Methods: To overcome this challenge, we explore an approach for predicting segmentation quality based on Reverse Classification Accuracy, which enables us to discriminate between successful and failed segmentations on a per-cases basis. We validate this approach on a new, large-scale manually-annotated set of 4,800 cardiac magnetic resonance scans. We then apply our method to a large cohort of 7,250 cardiac MRI on which we have performed manual QC. Results: We report results used for predicting segmentation quality metrics including Dice Similarity Coefficient (DSC) and surface-distance measures. As initial validation, we present data for 400 scans demonstrating 99% accuracy for classifying low and high quality segmentations using predicted DSC scores. As further validation we show high correlation between real and predicted scores and 95% classification accuracy on 4,800 scans for which manual segmentations were available. We mimic real-world application of the method on 7,250 cardiac MRI where we show good agreement between predicted quality metrics and manual visual QC scores. Conclusions: We show that RCA has the potential for accurate and fully automatic segmentation QC on a per-case basis in the context of large-scale population imaging as in the UK Biobank Imaging Study.

Robert Robinson, Ozan Oktay, Wenjia Bai et al.

Recent advances in deep learning based image segmentation methods have enabled real-time performance with human-level accuracy. However, occasionally even the best method fails due to low image quality, artifacts or unexpected behaviour of black box algorithms. Being able to predict segmentation quality in the absence of ground truth is of paramount importance in clinical practice, but also in large-scale studies to avoid the inclusion of invalid data in subsequent analysis. In this work, we propose two approaches of real-time automated quality control for cardiovascular MR segmentations using deep learning. First, we train a neural network on 12,880 samples to predict Dice Similarity Coefficients (DSC) on a per-case basis. We report a mean average error (MAE) of 0.03 on 1,610 test samples and 97% binary classification accuracy for separating low and high quality segmentations. Secondly, in the scenario where no manually annotated data is available, we train a network to predict DSC scores from estimated quality obtained via a reverse testing strategy. We report an MAE=0.14 and 91% binary classification accuracy for this case. Predictions are obtained in real-time which, when combined with real-time segmentation methods, enables instant feedback on whether an acquired scan is analysable while the patient is still in the scanner. This further enables new applications of optimising image acquisition towards best possible analysis results.

Wenjia Bai, Matthew Sinclair, Giacomo Tarroni et al.

Cardiovascular magnetic resonance (CMR) imaging is a standard imaging modality for assessing cardiovascular diseases (CVDs), the leading cause of death globally. CMR enables accurate quantification of the cardiac chamber volume, ejection fraction and myocardial mass, providing information for diagnosis and monitoring of CVDs. However, for years, clinicians have been relying on manual approaches for CMR image analysis, which is time consuming and prone to subjective errors. It is a major clinical challenge to automatically derive quantitative and clinically relevant information from CMR images. Deep neural networks have shown a great potential in image pattern recognition and segmentation for a variety of tasks. Here we demonstrate an automated analysis method for CMR images, which is based on a fully convolutional network (FCN). The network is trained and evaluated on a large-scale dataset from the UK Biobank, consisting of 4,875 subjects with 93,500 pixelwise annotated images. The performance of the method has been evaluated using a number of technical metrics, including the Dice metric, mean contour distance and Hausdorff distance, as well as clinically relevant measures, including left ventricle (LV) end-diastolic volume (LVEDV) and end-systolic volume (LVESV), LV mass (LVM); right ventricle (RV) end-diastolic volume (RVEDV) and end-systolic volume (RVESV). By combining FCN with a large-scale annotated dataset, the proposed automated method achieves a high performance on par with human experts in segmenting the LV and RV on short-axis CMR images and the left atrium (LA) and right atrium (RA) on long-axis CMR images.