C. A. Murthy

Namita Jain, Susmita Ghosh, C. A. Murthy

The existing biclustering algorithms for finding feature relation based biclusters often depend on assumptions like monotonicity or linearity. Though a few algorithms overcome this problem by using density-based methods, they tend to miss out many biclusters because they use global criteria for identifying dense regions. The proposed method, RelDenClu uses the local variations in marginal and joint densities for each pair of features to find the subset of observations, which forms the bases of the relation between them. It then finds the set of features connected by a common set of observations, resulting in a bicluster. To show the effectiveness of the proposed methodology, experimentation has been carried out on fifteen types of simulated datasets. Further, it has been applied to six real-life datasets. For three of these real-life datasets, the proposed method is used for unsupervised learning, while for other three real-life datasets it is used as an aid to supervised learning. For all the datasets the performance of the proposed method is compared with that of seven different state-of-the-art algorithms and the proposed algorithm is seen to produce better results. The efficacy of proposed algorithm is also seen by its use on COVID-19 dataset for identifying some features (genetic, demographics and others) that are likely to affect the spread of COVID-19.

Angshuman Roy, Alok Goswami, C. A. Murthy

We propose a new multivariate dependency measure. It is obtained by considering a Gaussian kernel based distance between the copula transform of the given d-dimensional distribution and the uniform copula and then appropriately normalizing it. The resulting measure is shown to satisfy a number of desirable properties. A nonparametric estimate is proposed for this dependency measure and its properties (finite sample as well as asymptotic) are derived. Some comparative studies of the proposed dependency measure estimate with some widely used dependency measure estimates on artificial datasets are included. A non-parametric test of independence between two or more random variables based on this measure is proposed. A comparison of the proposed test with some existing nonparametric multivariate test for independence is presented.

Namita Jain, C. A. Murthy

This article proposes a new method to estimate an existing mutual information based dependence measure using histogram density estimates. Finding a suitable bin length for histogram is an open problem. We propose a new way of computing the bin length for histogram using a function of maximum separation between points. The chosen bin length leads to consistent density estimates for histogram method. The values of density thus obtained are used to calculate an estimate of an existing dependence measure. The proposed estimate is named as Mutual Information Based Dependence Index (MIDI). Some important properties of MIDI have also been stated. The performance of the proposed method has been compared to generally accepted measures like Distance Correlation (dcor), Maximal Information Coefficient (MINE) in terms of accuracy and computational complexity with the help of several artificial data sets with different amounts of noise. The proposed method is able to detect many types of relationships between variables, without making any assumption about the functional form of the relationship. The power statistics of proposed method illustrate their effectiveness in detecting non linear relationship. Thus, it is able to achieve generality without a high rate of false positive cases. MIDI is found to work better on a real life data set than competing methods. The proposed method is found to overcome some of the limitations which occur with dcor and MINE. Computationally, MIDI is found to be better than dcor and MINE, in terms of time and memory, making it suitable for large data sets.