Yulia Otmakhova

Thinh Hung Truong, Yulia Otmakhova, Timothy Baldwin et al.

Negation is poorly captured by current language models, although the extent of this problem is not widely understood. We introduce a natural language inference (NLI) test suite to enable probing the capabilities of NLP methods, with the aim of understanding sub-clausal negation. The test suite contains premise--hypothesis pairs where the premise contains sub-clausal negation and the hypothesis is constructed by making minimal modifications to the premise in order to reflect different possible interpretations. Aside from adopting standard NLI labels, our test suite is systematically constructed under a rigorous linguistic framework. It includes annotation of negation types and constructions grounded in linguistic theory, as well as the operations used to construct hypotheses. This facilitates fine-grained analysis of model performance. We conduct experiments using pre-trained language models to demonstrate that our test suite is more challenging than existing benchmarks focused on negation, and show how our annotation supports a deeper understanding of the current NLI capabilities in terms of negation and quantification.

Yulia Otmakhova, Hung Thinh Truong, Timothy Baldwin et al.

In this paper we report on our submission to the Multidocument Summarisation for Literature Review (MSLR) shared task. Specifically, we adapt PRIMERA (Xiao et al., 2022) to the biomedical domain by placing global attention on important biomedical entities in several ways. We analyse the outputs of the 23 resulting models, and report patterns in the results related to the presence of additional global attention, number of training steps, and the input configuration.

Qingyu Chen, Alexis Allot, Robert Leaman et al.

The COVID-19 pandemic has been severely impacting global society since December 2019. Massive research has been undertaken to understand the characteristics of the virus and design vaccines and drugs. The related findings have been reported in biomedical literature at a rate of about 10,000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200,000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g., Diagnosis and Treatment) to the articles in LitCovid. Despite the continuing advances in biomedical text mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset, consisting of over 30,000 articles with manually reviewed topics, was created for training and testing. It is one of the largest multilabel classification datasets in biomedical scientific literature. 19 teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181, and 0.9394 for macro F1-score, micro F1-score, and instance-based F1-score, respectively. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development.

Yulia Otmakhova, Matteo Guida, Lea Frermann

Metaphors are powerful framing devices, yet their source domains alone do not fully explain the specific associations they evoke. We argue that the interplay between source domains and semantic frames determines how metaphors shape understanding of complex issues, and present a computational framework that allows to derive salient discourse metaphors through their source domains and semantic frames. Applying this framework to climate change news, we uncover not only well-known source domains but also reveal nuanced frame-level associations that distinguish how the issue is portrayed. In analyzing immigration discourse across political ideologies, we demonstrate that liberals and conservatives systematically employ different semantic frames within the same source domains, with conservatives favoring frames emphasizing uncontrollability and liberals choosing neutral or more ``victimizing'' semantic frames. Our work bridges conceptual metaphor theory and linguistics, providing the first NLP approach for discovery of discourse metaphors and fine-grained analysis of differences in metaphorical framing. Code, data and statistical scripts are available at https://github.com/julia-nixie/ConceptFrameMet.

Matteo Guida, Yulia Otmakhova, Eduard Hovy et al.

Framing theory posits that how information is presented shapes audience responses, but computational work has largely ignored audience reactions. While recent work showed that article framing systematically shapes the content of reader responses, this paper asks: Does framing also affect response quality? Analyzing 1M comments across 2.7K news articles, we operationalize quality as comment health (constructive, good-faith contributions). We find that article frames significantly predict comment health while controlling for topic, and that comments that adopt the article frame are healthier than those that depart from it. Further, unhealthy top-level comments tend to generate more unhealthy responses, independent of the frame being used in the comment. Our results establish a link between framing theory and discourse quality, laying the groundwork for downstream applications. We illustrate this potential with a proactive frame-aware LLM- based system to mitigate unhealthy discourse

Francisco Zanartu, Yulia Otmakhova, John Cook et al.

Misinformation about climate change causes numerous negative impacts, necessitating corrective responses. Psychological research has offered various strategies for reducing the influence of climate misinformation, such as the fact-myth-fallacy-fact-structure. However, practically implementing corrective interventions at scale represents a challenge. Automatic detection and correction of misinformation offers a solution to the misinformation problem. This study documents the development of large language models that accept as input a climate myth and produce a debunking that adheres to the fact-myth-fallacy-fact (``truth sandwich'') structure, by incorporating contrarian claim classification and fallacy detection into an LLM prompting framework. We combine open (Mixtral, Palm2) and proprietary (GPT-4) LLMs with prompting strategies of varying complexity. Experiments reveal promising performance of GPT-4 and Mixtral if combined with structured prompts. We identify specific challenges of debunking generation and human evaluation, and map out avenues for future work. We release a dataset of high-quality truth-sandwich debunkings, source code and a demo of the debunking system.

Yulia Otmakhova, Lea Frermann

Narrative frames are a powerful way of conceptualizing and communicating complex, controversial ideas, however automated frame analysis to date has mostly overlooked this framing device. In this paper, we connect elements of narrativity with fundamental aspects of framing, and present a framework which formalizes and operationalizes such aspects. We annotate and release a data set of news articles in the climate change domain, analyze the dominance of narrative frame components across political leanings, and test LLMs in their ability to predict narrative frames and their components. Finally, we apply our framework in an unsupervised way to elicit components of narrative framing in a second domain, the COVID-19 crisis, where our predictions are congruent with prior theoretical work showing the generalizability of our approach.

Thinh Hung Truong, Yulia Otmakhova, Karin Verspoor et al.

In this work, we measure the impact of affixal negation on modern English large language models (LLMs). In affixal negation, the negated meaning is expressed through a negative morpheme, which is potentially challenging for LLMs as their tokenizers are often not morphologically plausible. We conduct extensive experiments using LLMs with different subword tokenization methods, which lead to several insights on the interaction between tokenization performance and negation sensitivity. Despite some interesting mismatches between tokenization accuracy and negation detection performance, we show that models can, on the whole, reliably recognize the meaning of affixal negation.

Matteo Guida, Yulia Otmakhova, Eduard Hovy et al.

When a news article describes immigration as an "economic burden" or a "humanitarian crisis," it selectively emphasizes certain aspects of the issue. Although \textit{framing} shapes how the public interprets such issues, audiences do not absorb frames passively but actively reorganize the presented information. While this relationship between source content and audience response is well-documented in the social sciences, NLP approaches often ignore it, detecting frames in articles and responses in isolation. We present the first computational framework for large-scale analysis of framing across source content (news articles) and audience responses (reader comments). Methodologically, we refine frame labels and develop a framework that reconstructs dominant frames in articles and comments from sentence-level predictions, and aligns articles with topically relevant comments. Applying our framework across eleven topics and two news outlets, we find that frame reuse in comments correlates highly across outlets, while topic-specific patterns vary. We release a frame classifier that performs well on both articles and comments, a dataset of article and comment sentences manually labeled for frames, and a large-scale dataset of articles and comments with predicted frame labels.

Matteo Guida, Yulia Otmakhova, Eduard Hovy et al.

Automated large-scale analysis of public discussions around contested issues like abortion requires detecting and understanding the use of arguments. While Large Language Models (LLMs) have shown promise in language processing tasks, their performance in mining topic-specific, pre-defined arguments in online comments remains underexplored. We evaluate four state-of-the-art LLMs on three argument mining tasks using datasets comprising over 2,000 opinion comments across six polarizing topics. Quantitative evaluation suggests an overall strong performance across the three tasks, especially for large and fine-tuned LLMs, albeit at a significant environmental cost. However, a detailed error analysis revealed systematic shortcomings on long and nuanced comments and emotionally charged language, raising concerns for downstream applications like content moderation or opinion analysis. Our results highlight both the promise and current limitations of LLMs for automated argument analysis in online comments.

Yulia Otmakhova, Hung Thinh Truong, Rahmad Mahendra et al.

We present FLUKE (Framework for LingUistically-driven and tasK-agnostic robustness Evaluation), a framework for assessing model robustness through systematic minimal variations of test data. FLUKE introduces controlled variations across linguistic levels -- from orthography to dialect and style -- and leverages large language models (LLMs) with human validation to generate modifications. We demonstrate FLUKE's utility by evaluating both fine-tuned models and LLMs across six diverse NLP tasks (four classification and two generation tasks), and reveal that (1) the impact of linguistic variations is highly task-dependent, with some tests being critical for certain tasks but irrelevant for others; (2) LLMs still exhibit significant brittleness to certain linguistic variations, with reasoning LLMs surprisingly showing less robustness on some tasks compared to base models; (3) models are overall more brittle to natural, fluent modifications such as syntax or style changes (and especially to negation), compared to corruption-style tests such as letter flipping; (4) the ability of a model to use a linguistic feature in generation does not correlate to its robustness to this feature on downstream tasks. These findings highlight the importance of systematic robustness testing for understanding model behaviors.

Lucy Lu Wang, Yulia Otmakhova, Jay DeYoung et al.

Evaluating multi-document summarization (MDS) quality is difficult. This is especially true in the case of MDS for biomedical literature reviews, where models must synthesize contradicting evidence reported across different documents. Prior work has shown that rather than performing the task, models may exploit shortcuts that are difficult to detect using standard n-gram similarity metrics such as ROUGE. Better automated evaluation metrics are needed, but few resources exist to assess metrics when they are proposed. Therefore, we introduce a dataset of human-assessed summary quality facets and pairwise preferences to encourage and support the development of better automated evaluation methods for literature review MDS. We take advantage of community submissions to the Multi-document Summarization for Literature Review (MSLR) shared task to compile a diverse and representative sample of generated summaries. We analyze how automated summarization evaluation metrics correlate with lexical features of generated summaries, to other automated metrics including several we propose in this work, and to aspects of human-assessed summary quality. We find that not only do automated metrics fail to capture aspects of quality as assessed by humans, in many cases the system rankings produced by these metrics are anti-correlated with rankings according to human annotators.

Thinh Hung Truong, Yulia Otmakhova, Rahmad Mahendra et al.

This paper describes the submissions of the Natural Language Processing (NLP) team from the Australian Research Council Industrial Transformation Training Centre (ITTC) for Cognitive Computing in Medical Technologies to the TREC 2021 Clinical Trials Track. The task focuses on the problem of matching eligible clinical trials to topics constituting a summary of a patient's admission notes. We explore different ways of representing trials and topics using NLP techniques, and then use a common retrieval model to generate the ranked list of relevant trials for each topic. The results from all our submitted runs are well above the median scores for all topics, but there is still plenty of scope for improvement.

Simon Šuster, Karin Verspoor, Timothy Baldwin et al.

The COVID-19 pandemic has driven ever-greater demand for tools which enable efficient exploration of biomedical literature. Although semi-structured information resulting from concept recognition and detection of the defining elements of clinical trials (e.g. PICO criteria) has been commonly used to support literature search, the contributions of this abstraction remain poorly understood, especially in relation to text-based retrieval. In this study, we compare the results retrieved by a standard search engine with those filtered using clinically-relevant concepts and their relations. With analysis based on the annotations from the TREC-COVID shared task, we obtain quantitative as well as qualitative insights into characteristics of relational and concept-based literature exploration. Most importantly, we find that the relational concept selection filters the original retrieved collection in a way that decreases the proportion of unjudged documents and increases the precision, which means that the user is likely to be exposed to a larger number of relevant documents.

Karin Verspoor, Simon Šuster, Yulia Otmakhova et al.

We present COVID-SEE, a system for medical literature discovery based on the concept of information exploration, which builds on several distinct text analysis and natural language processing methods to structure and organise information in publications, and augments search by providing a visual overview supporting exploration of a collection to identify key articles of interest. We developed this system over COVID-19 literature to help medical professionals and researchers explore the literature evidence, and improve findability of relevant information. COVID-SEE is available at http://covid-see.com.