Dominika Tkaczyk

Dominika Tkaczyk, Rohit Gupta, Riccardo Cinti et al.

Bibliographic reference parsers extract machine-readable metadata such as author names, title, journal, and year from bibliographic reference strings. To extract the metadata, the parsers apply heuristics or machine learning. However, no reference parser, and no algorithm, consistently gives the best results in every scenario. For instance, one tool may be best in extracting titles in ACM citation style, but only third best when APA is used. Another tool may be best in extracting English author names, while another one is best for noisy data (i.e. inconsistent citation styles). In this paper, which is an extended version of our recent RecSys poster, we address the problem of reference parsing from a recommender-systems and meta-learning perspective. We propose ParsRec, a meta-learning based recommender-system that recommends the potentially most effective parser for a given reference string. ParsRec recommends one out of 10 open-source parsers: Anystyle-Parser, Biblio, CERMINE, Citation, Citation-Parser, GROBID, ParsCit, PDFSSA4MET, Reference Tagger, and Science Parse. We evaluate ParsRec on 105k references from chemistry. We propose two approaches to meta-learning recommendations. The first approach learns the best parser for an entire reference string. The second approach learns the best parser for each metadata type in a reference string. The second approach achieved a 2.6% increase in F1 (0.909 vs. 0.886) over the best single parser (GROBID), reducing the false positive rate by 20.2% (0.075 vs. 0.094), and the false negative rate by 18.9% (0.107 vs. 0.132).

Dominika Tkaczyk, Andrew Collins, Joeran Beel

Information about the contributions of individual authors to scientific publications is important for assessing authors' achievements. Some biomedical publications have a short section that describes authors' roles and contributions. It is usually written in natural language and hence author contributions cannot be trivially extracted in a machine-readable format. In this paper, we present 1) A statistical analysis of roles in author contributions sections, and 2) NaïveRole, a novel approach to extract structured authors' roles from author contribution sections. For the first part, we used co-clustering techniques, as well as Open Information Extraction, to semi-automatically discover the popular roles within a corpus of 2,000 contributions sections from PubMed Central. The discovered roles were used to automatically build a training set for NaïveRole, our role extractor approach, based on Naïve Bayes. NaïveRole extracts roles with a micro-averaged precision of 0.68, recall of 0.48 and F1 of 0.57. It is, to the best of our knowledge, the first attempt to automatically extract author roles from research papers. This paper is an extended version of a previous poster published at JCDL 2018.

Wiesław Kopeć, Marcin Skibiński, Cezary Biele et al.

One of the more prominent trends within Industry 4.0 is the drive to employ Robotic Process Automation (RPA), especially as one of the elements of the Lean approach. The full implementation of RPA is riddled with challenges relating both to the reality of everyday business operations, from SMEs to SSCs and beyond, and the social effects of the changing job market. To successfully address these points there is a need to develop a solution that would adjust to the existing business operations and at the same time lower the negative social impact of the automation process. To achieve these goals we propose a hybrid, human-centered approach to the development of software robots. This design and implementation method combines the Living Lab approach with empowerment through participatory design to kick-start the co-development and co-maintenance of hybrid software robots which, supported by variety of AI methods and tools, including interactive and collaborative ML in the cloud, transform menial job posts into higher-skilled positions, allowing former employees to stay on as robot co-designers and maintainers, i.e. as co-programmers who supervise the machine learning processes with the use of tailored high-level RPA Domain Specific Languages (DSLs) to adjust the functioning of the robots and maintain operational flexibility.

Dominika Tkaczyk, Paraic Sheridan, Joeran Beel

Bibliographic reference parsers extract metadata (e.g. author names, title, year) from bibliographic reference strings. No reference parser consistently gives the best results in every scenario. For instance, one tool may be best in extracting titles, and another tool in extracting author names. In this paper, we address the problem of reference parsing from a recommender-systems perspective. We propose ParsRec, a meta-learning approach that recommends the potentially best parser(s) for a given reference string. We evaluate ParsRec on 105k references from chemistry. We propose two approaches to meta-learning recommendations. The first approach learns the best parser for an entire reference string. The second approach learns the best parser for each field of a reference string. The second approach achieved a 2.6% increase in F1 (0.909 vs. 0.886, p < 0.001) over the best single parser (GROBID), reducing the false positive rate by 20.2% (0.075 vs. 0.094), and the false negative rate by 18.9% (0.107 vs. 0.132).

Andrew Collins, Dominika Tkaczyk, Joeran Beel

The effectiveness of recommendation algorithms is typically assessed with evaluation metrics such as root mean square error, F1, or click through rates, calculated over entire datasets. The best algorithm is typically chosen based on these overall metrics. However, there is no single-best algorithm for all users, items, and contexts. Choosing a single algorithm based on overall evaluation results is not optimal. In this paper, we propose a meta-learning-based approach to recommendation, which aims to select the best algorithm for each user-item pair. We evaluate our approach using the MovieLens 100K and 1M datasets. Our approach (RMSE, 100K: 0.973; 1M: 0.908) did not outperform the single-best algorithm, SVD++ (RMSE, 100K: 0.942; 1M: 0.887). We also develop a distinction between meta-learners that operate per-instance (micro-level), per-data subset (mid-level), and per-dataset (global level). Our evaluation shows that a hypothetically perfect micro-level meta-learner would improve RMSE by 25.5% for the MovieLens 100K and 1M datasets, compared to the overall-best algorithms used.

Andrew Collins, Dominika Tkaczyk, Akiko Aizawa et al.

"Position bias" describes the tendency of users to interact with items on top of a list with higher probability than with items at a lower position in the list, regardless of the items' actual relevance. In the domain of recommender systems, particularly recommender systems in digital libraries, position bias has received little attention. We conduct a study in a real-world recommender system that delivered ten million related-article recommendations to the users of the digital library Sowiport, and the reference manager JabRef. Recommendations were randomly chosen to be shuffled or non-shuffled, and we compared click-through rate (CTR) for each rank of the recommendations. According to our analysis, the CTR for the highest rank in the case of Sowiport is 53% higher than expected in a hypothetical non-biased situation (0.189% vs. 0.123%). Similarly, in the case of Jabref the highest rank received a CTR of 1.276%, which is 87% higher than expected (0.683%). A chi-squared test confirms the strong relationship between the rank of the recommendation shown to the user and whether the user decided to click it (p < 0.01 for both Jabref and Sowiport). Our study confirms the findings from other domains, that recommendations in the top positions are more often clicked, regardless of their actual relevance.

Dominika Tkaczyk

Within the past few decades we have witnessed digital revolution, which moved scholarly communication to electronic media and also resulted in a substantial increase in its volume. Nowadays keeping track with the latest scientific achievements poses a major challenge for the researchers. Scientific information overload is a severe problem that slows down scholarly communication and knowledge propagation across the academia. Modern research infrastructures facilitate studying scientific literature by providing intelligent search tools, proposing similar and related documents, visualizing citation and author networks, assessing the quality and impact of the articles, and so on. In order to provide such high quality services the system requires the access not only to the text content of stored documents, but also to their machine-readable metadata. Since in practice good quality metadata is not always available, there is a strong demand for a reliable automatic method of extracting machine-readable metadata directly from source documents. This research addresses these problems by proposing an automatic, accurate and flexible algorithm for extracting wide range of metadata directly from scientific articles in born-digital form. Extracted information includes basic document metadata, structured full text and bibliography section. Designed as a universal solution, proposed algorithm is able to handle a vast variety of publication layouts with high precision and thus is well-suited for analyzing heterogeneous document collections. This was achieved by employing supervised and unsupervised machine-learning algorithms trained on large, diverse datasets. The evaluation we conducted showed good performance of proposed metadata extraction algorithm. The comparison with other similar solutions also proved our algorithm performs better than competition for most metadata types.

Mateusz Fedoryszak, Dominika Tkaczyk, Łukasz Bolikowski

During the process of citation matching links from bibliography entries to referenced publications are created. Such links are indicators of topical similarity between linked texts, are used in assessing the impact of the referenced document and improve navigation in the user interfaces of digital libraries. In this paper we present a citation matching method and show how to scale it up to handle great amounts of data using appropriate indexing and a MapReduce paradigm in the Hadoop environment.