Fahim Irfan Alam

Muhammad Sakib Khan Inan, Fahim Irfan Alam, Rizwan Hasan

Breast cancer has become a symbol of tremendous concern in the modern world, as it is one of the major causes of cancer mortality worldwide. In this regard, breast ultrasonography images are frequently utilized by doctors to diagnose breast cancer at an early stage. However, the complex artifacts and heavily noised breast ultrasonography images make diagnosis a great challenge. Furthermore, the ever-increasing number of patients being screened for breast cancer necessitates the use of automated end-to-end technology for highly accurate diagnosis at a low cost and in a short time. In this concern, to develop an end-to-end integrated pipeline for breast ultrasonography image classification, we conducted an exhaustive analysis of image preprocessing methods such as K Means++ and SLIC, as well as four transfer learning models such as VGG16, VGG19, DenseNet121, and ResNet50. With a Dice-coefficient score of 63.4 in the segmentation stage and accuracy and an F1-Score (Benign) of 73.72 percent and 78.92 percent in the classification stage, the combination of SLIC, UNET, and VGG16 outperformed all other integrated combinations. Finally, we have proposed an end to end integrated automated pipelining framework which includes preprocessing with SLIC to capture super-pixel features from the complex artifact of ultrasonography images, complementing semantic segmentation with modified U-Net, leading to breast tumor classification using a transfer learning approach with a pre-trained VGG16 and a densely connected neural network. The proposed automated pipeline can be effectively implemented to assist medical practitioners in making more accurate and timely diagnoses of breast cancer.

Fahim Irfan Alam, Jun Zhou, Alan Wee-Chung Liew et al.

Image segmentation is considered to be one of the critical tasks in hyperspectral remote sensing image processing. Recently, convolutional neural network (CNN) has established itself as a powerful model in segmentation and classification by demonstrating excellent performances. The use of a graphical model such as a conditional random field (CRF) contributes further in capturing contextual information and thus improving the segmentation performance. In this paper, we propose a method to segment hyperspectral images by considering both spectral and spatial information via a combined framework consisting of CNN and CRF. We use multiple spectral cubes to learn deep features using CNN, and then formulate deep CRF with CNN-based unary and pairwise potential functions to effectively extract the semantic correlations between patches consisting of three-dimensional data cubes. Effective piecewise training is applied in order to avoid the computationally expensive iterative CRF inference. Furthermore, we introduce a deep deconvolution network that improves the segmentation masks. We also introduce a new dataset and experimented our proposed method on it along with several widely adopted benchmark datasets to evaluate the effectiveness of our method. By comparing our results with those from several state-of-the-art models, we show the promising potential of our method.