Abdullah-Al-Zubaer Imran

Yeahia Sarker, Abdullah-Al-Zubaer Imran, Md Hafiz Ahamed et al.

Deep learning-based super-resolution methods have shown great promise, especially for single image super-resolution (SISR) tasks. Despite the performance gain, these methods are limited due to their reliance on copious data for model training. In addition, supervised SISR solutions rely on local neighbourhood information focusing only on the feature learning processes for the reconstruction of low-dimensional images. Moreover, they fail to capitalize on global context due to their constrained receptive field. To combat these challenges, this paper proposes a novel image-specific solution, namely non-local variational autoencoder (\texttt{NLVAE}), to reconstruct a high-resolution (HR) image from a single low-resolution (LR) image without the need for any prior training. To harvest maximum details for various receptive regions and high-quality synthetic images, \texttt{NLVAE} is introduced as a self-supervised strategy that reconstructs high-resolution images using disentangled information from the non-local neighbourhood. Experimental results from seven benchmark datasets demonstrate the effectiveness of the \texttt{NLVAE} model. Moreover, our proposed model outperforms a number of baseline and state-of-the-art methods as confirmed through extensive qualitative and quantitative evaluations.

Attiano Purpura-Pontoniere, Demetri Terzopoulos, Adam Wang et al.

Disease diagnosis from medical images via supervised learning is usually dependent on tedious, error-prone, and costly image labeling by medical experts. Alternatively, semi-supervised learning and self-supervised learning offer effectiveness through the acquisition of valuable insights from readily available unlabeled images. We present Semi-Supervised Relational Contrastive Learning (SRCL), a novel semi-supervised learning model that leverages self-supervised contrastive loss and sample relation consistency for the more meaningful and effective exploitation of unlabeled data. Our experimentation with the SRCL model explores both pre-train/fine-tune and joint learning of the pretext (contrastive learning) and downstream (diagnostic classification) tasks. We validate against the ISIC 2018 Challenge benchmark skin lesion classification dataset and demonstrate the effectiveness of our semi-supervised method on varying amounts of labeled data.

Nusrat Munia, Abdullah-Al-Zubaer Imran

Skin diseases, such as skin cancer, are a significant public health issue, and early diagnosis is crucial for effective treatment. Artificial intelligence (AI) algorithms have the potential to assist in triaging benign vs malignant skin lesions and improve diagnostic accuracy. However, existing AI models for skin disease diagnosis are often developed and tested on limited and biased datasets, leading to poor performance on certain skin tones. To address this problem, we propose a novel generative model, named DermDiff, that can generate diverse and representative dermoscopic image data for skin disease diagnosis. Leveraging text prompting and multimodal image-text learning, DermDiff improves the representation of underrepresented groups (patients, diseases, etc.) in highly imbalanced datasets. Our extensive experimentation showcases the effectiveness of DermDiff in terms of high fidelity and diversity. Furthermore, downstream evaluation suggests the potential of DermDiff in mitigating racial biases for dermatology diagnosis. Our code is available at https://github.com/Munia03/DermDiff

Tyler Ward, Meredith K. Owen, O'Kira Coleman et al.

Medical image segmentation is a key task in the imaging workflow, influencing many image-based decisions. Traditional, fully-supervised segmentation models rely on large amounts of labeled training data, typically obtained through manual annotation, which can be an expensive, time-consuming, and error-prone process. This signals a need for accurate, automatic, and annotation-efficient methods of training these models. We propose ADA-SAM (automated, domain-specific, and adaptive segment anything model), a novel multitask learning framework for medical image segmentation that leverages class activation maps from an auxiliary classifier to guide the predictions of the semi-supervised segmentation branch, which is based on the Segment Anything (SAM) framework. Additionally, our ADA-SAM model employs a novel gradient feedback mechanism to create a learnable connection between the segmentation and classification branches by using the segmentation gradients to guide and improve the classification predictions. We validate ADA-SAM on real-world clinical data collected during rehabilitation trials, and demonstrate that our proposed method outperforms both fully-supervised and semi-supervised baselines by double digits in limited label settings. Our code is available at: https://github.com/tbwa233/ADA-SAM.

Nusrat Munia, Abdullah-Al-Zubaer Imran

Artificial Intelligence (AI) in skin disease diagnosis has improved significantly, but a major concern is that these models frequently show biased performance across subgroups, especially regarding sensitive attributes such as skin color. To address these issues, we propose a novel generative AI-based framework, namely, Dermatology Diffusion Transformer (DermDiT), which leverages text prompts generated via Vision Language Models and multimodal text-image learning to generate new dermoscopic images. We utilize large vision language models to generate accurate and proper prompts for each dermoscopic image which helps to generate synthetic images to improve the representation of underrepresented groups (patient, disease, etc.) in highly imbalanced datasets for clinical diagnoses. Our extensive experimentation showcases the large vision language models providing much more insightful representations, that enable DermDiT to generate high-quality images. Our code is available at https://github.com/Munia03/DermDiT

Nusrat Munia, Junfeng Zhu, Olfa Nasraoui et al.

Social networks can be a valuable source of information during crisis events. In particular, users can post a stream of multimodal data that can be critical for real-time humanitarian response. However, effectively extracting meaningful information from this large and noisy data stream and effectively integrating heterogeneous data remains a formidable challenge. In this work, we explore vision language models (VLMs) and advanced fusion strategies to enhance the classification of crisis data in three different tasks. We incorporate LLaVA-generated text to improve text-image alignment. Additionally, we leverage Contrastive Language-Image Pretraining (CLIP)-based vision and text embeddings, which, without task-specific fine-tuning, outperform traditional models. To further refine multimodal fusion, we employ Guided Cross Attention (Guided CA) and combine it with the Differential Attention mechanism to enhance feature alignment by emphasizing critical information while filtering out irrelevant content. Our results show that while Differential Attention improves classification performance, Guided CA remains highly effective in aligning multimodal features. Extensive experiments on the CrisisMMD benchmark data set demonstrate that the combination of pretrained VLMs, enriched textual descriptions, and adaptive fusion strategies consistently outperforms state-of-the-art models in classification accuracy, contributing to more reliable and interpretable models for three different tasks that are crucial for disaster response. Our code is available at https://github.com/Munia03/Multimodal_Crisis_Event.

Tyler Ward, Aaron Moseley, Abdullah-Al-Zubaer Imran

Segmentation is one of the most important tasks in the medical imaging pipeline as it influences a number of image-based decisions. To be effective, fully supervised segmentation approaches require large amounts of manually annotated training data. However, the pixel-level annotation process is expensive, time-consuming, and error-prone, hindering progress and making it challenging to perform effective segmentations. Therefore, models must learn efficiently from limited labeled data. Self-supervised learning (SSL), particularly contrastive learning via pre-training on unlabeled data and fine-tuning on limited annotations, can facilitate such limited labeled image segmentation. To this end, we propose a novel self-supervised contrastive learning framework for medical image segmentation, leveraging inherent relationships of different images, dubbed PolyCL. Without requiring any pixel-level annotations or unreasonable data augmentations, our PolyCL learns and transfers context-aware discriminant features useful for segmentation from an innovative surrogate, in a task-related manner. Additionally, we integrate the Segment Anything Model (SAM) into our framework in two novel ways: as a post-processing refinement module that improves the accuracy of predicted masks using bounding box prompts derived from coarse outputs, and as a propagation mechanism via SAM 2 that generates volumetric segmentations from a single annotated 2D slice. Experimental evaluations on three public computed tomography (CT) datasets demonstrate that PolyCL outperforms fully-supervised and self-supervised baselines in both low-data and cross-domain scenarios. Our code is available at https://github.com/tbwa233/PolyCL.

Tyler Ward, Abdullah-Al-Zubaer Imran

Quantifying functional connectivity (FC), a vital metric for the diagnosis of various brain disorders, traditionally relies on the use of a pre-defined brain atlas. However, using such atlases can lead to issues regarding selection bias and lack of regard for specificity. Addressing this, we propose a novel transformer-based classification network (ABFR-KAN) with effective brain function representation to aid in diagnosing autism spectrum disorder (ASD). ABFR-KAN leverages Kolmogorov-Arnold Network (KAN) blocks replacing traditional multi-layer perceptron (MLP) components. Thorough experimentation reveals the effectiveness of ABFR-KAN in improving the diagnosis of ASD under various configurations of the model architecture. Our code is available at https://github.com/tbwa233/ABFR-KAN

Matthew Massey, Abdullah-Al-Zubaer Imran

Surficial geologic mapping is essential for understanding Earth surface processes, addressing modern challenges such as climate change and national security, and supporting common applications in engineering and resource management. However, traditional mapping methods are labor-intensive, limiting spatial coverage and introducing potential biases. To address these limitations, we introduce EarthScape, a novel, AI-ready multimodal dataset specifically designed for surficial geologic mapping and Earth surface analysis. EarthScape integrates high-resolution aerial RGB and near-infrared (NIR) imagery, digital elevation models (DEM), multi-scale DEM-derived terrain features, and hydrologic and infrastructure vector data. The dataset provides detailed annotations for seven distinct surficial geologic classes encompassing various geological processes. We present a comprehensive data processing pipeline using open-sourced raw data and establish baseline benchmarks using different spatial modalities to demonstrate the utility of EarthScape. As a living dataset with a vision for expansion, EarthScape bridges the gap between computer vision and Earth sciences, offering a valuable resource for advancing research in multimodal learning, geospatial analysis, and geological mapping. Our code is available at https://github.com/masseygeo/earthscape.

Tyler Ward, Abdullah-Al-Zubaer Imran

Medical image segmentation is a key task in the imaging workflow, influencing many image-based decisions. Traditional, fully-supervised segmentation models rely on large amounts of labeled training data, typically obtained through manual annotation, which can be an expensive, time-consuming, and error-prone process. This signals a need for accurate, automatic, and annotation-efficient methods of training these models. We propose SAM-Mix, a novel multitask learning framework for medical image segmentation that uses class activation maps produced by an auxiliary classifier to guide the predictions of the semi-supervised segmentation branch, which is based on the SAM framework. Experimental evaluations on the public LiTS dataset confirm the effectiveness of SAM-Mix for simultaneous classification and segmentation of the liver from abdominal computed tomography (CT) scans. When trained for 90% fewer epochs on only 50 labeled 2D slices, representing just 0.04% of the available labeled training data, SAM-Mix achieves a Dice improvement of 5.1% over the best baseline model. The generalization results for SAM-Mix are even more impressive, with the same model configuration yielding a 25.4% Dice improvement on a cross-domain segmentation task. Our code is available at https://github.com/tbwa233/SAM-Mix.

Cohen Archbold, Usman Hassan, Nazmus Sakib et al.

Protest-related social media data are valuable for understanding collective action but inherently high-risk due to concerns surrounding surveillance, repression, and individual privacy. Contemporary AI systems can identify individuals, infer sensitive attributes, and cross-reference visual information across platforms, enabling surveillance that poses risks to protesters and bystanders. In such contexts, large foundation models trained on protest imagery risk memorizing and disclosing sensitive information, leading to cross-platform identity leakage and retroactive participant identification. Existing approaches to automated protest analysis do not provide a holistic pipeline that integrates privacy risk assessment, downstream analysis, and fairness considerations. To address this gap, we propose a responsible computing framework for analyzing collective protest dynamics while reducing risks to individual privacy. Our framework replaces sensitive protest imagery with well-labeled synthetic reproductions using conditional image synthesis, enabling analysis of collective patterns without direct exposure of identifiable individuals. We demonstrate that our approach produces realistic and diverse synthetic imagery while balancing downstream analytical utility with reductions in privacy risk. We further assess demographic fairness in the generated data, examining whether synthetic representations disproportionately affect specific subgroups. Rather than offering absolute privacy guarantees, our method adopts a pragmatic, harm-mitigating approach that enables socially sensitive analysis while acknowledging residual risks.

Abdullah-Al-Zubaer Imran, Sen Wang, Debashish Pal et al.

Purpose: Estimation of patient-specific organ doses is required for more comprehensive dose metrics, such as effective dose. Currently, available methods are performed retrospectively using the CT images themselves, which can only be done after the scan. To optimize CT acquisitions before scanning, rapid prediction of patient-specific organ dose is needed prospectively, using available scout images. We, therefore, devise an end-to-end, fully-automated deep learning solution to perform real-time, patient-specific, organ-level dosimetric estimation of CT scans. Approach: We propose the Scout-Net model for CT dose prediction at six different organs as well as for the overall patient body, leveraging the routinely obtained frontal and lateral scout images of patients, before their CT scans. To obtain reference values of the organ doses, we used Monte Carlo simulation and 3D segmentation methods on the corresponding CT images of the patients. Results: We validate our proposed Scout-Net model against real patient CT data and demonstrate the effectiveness in estimating organ doses in real-time (only 27 ms on average per scan). Additionally, we demonstrate the efficiency (real-time execution), sufficiency (reasonable error rates), and robustness (consistent across varying patient sizes) of the Scout-Net model. Conclusions: An effective, efficient, and robust Scout-Net model, once incorporated into the CT acquisition plan, could potentially guide the automatic exposure control for balanced image quality and radiation dose.

Md. Atik Ahamed, Jin Chen, Abdullah-Al-Zubaer Imran

Medical image classification is one of the most important tasks for computer-aided diagnosis. Deep learning models, particularly convolutional neural networks, have been successfully used for disease classification from medical images, facilitated by automated feature learning. However, the diverse imaging modalities and clinical pathology make it challenging to construct generalized and robust classifications. Towards improving the model performance, we propose a novel pretraining approach, namely Forward Forward Contrastive Learning (FFCL), which leverages the Forward-Forward Algorithm in a contrastive learning framework--both locally and globally. Our experimental results on the chest X-ray dataset indicate that the proposed FFCL achieves superior performance (3.69% accuracy over ImageNet pretrained ResNet-18) over existing pretraining models in the pneumonia classification task. Moreover, extensive ablation experiments support the particular local and global contrastive pretraining design in FFCL.

Ayaan Haque, Abdullah-Al-Zubaer Imran, Adam Wang et al.

Deep learning-based models, when trained in a fully-supervised manner, can be effective in performing complex image analysis tasks, although contingent upon the availability of large labeled datasets. Especially in the medical imaging domain, however, expert image annotation is expensive, time-consuming, and prone to variability. Semi-supervised learning from limited quantities of labeled data has shown promise as an alternative. Maximizing knowledge gains from copious unlabeled data benefits semi-supervised learning models. Moreover, learning multiple tasks within the same model further improves its generalizability. We propose MultiMix, a new multi-task learning model that jointly learns disease classification and anatomical segmentation in a semi-supervised manner, while preserving explainability through a novel saliency bridge between the two tasks. Our experiments with varying quantities of multi-source labeled data in the training sets confirm the effectiveness of MultiMix in the simultaneous classification of pneumonia and segmentation of the lungs in chest X-ray images. Moreover, both in-domain and cross-domain evaluations across these tasks further showcase the potential of our model to adapt to challenging generalization scenarios.

Ayaan Haque, Adam Wang, Abdullah-Al-Zubaer Imran

CT image quality is heavily reliant on radiation dose, which causes a trade-off between radiation dose and image quality that affects the subsequent image-based diagnostic performance. However, high radiation can be harmful to both patients and operators. Several (deep learning-based) approaches have been attempted to denoise low dose images. However, those approaches require access to large training sets, specifically the full dose CT images for reference, which can often be difficult to obtain. Self-supervised learning is an emerging alternative for lowering the reference data requirement facilitating unsupervised learning. Currently available self-supervised CT denoising works are either dependent on foreign domain or pretexts are not very task-relevant. To tackle the aforementioned challenges, we propose a novel self-supervised learning approach, namely Self-Supervised Window-Leveling for Image DeNoising (SSWL-IDN), leveraging an innovative, task-relevant, simple, yet effective surrogate -- prediction of the window-leveled equivalent. SSWL-IDN leverages residual learning and a hybrid loss combining perceptual loss and MSE, all incorporated in a VAE framework. Our extensive (in- and cross-domain) experimentation demonstrates the effectiveness of SSWL-IDN in aggressive denoising of CT (abdomen and chest) images acquired at 5\% dose level only.

Ayaan Haque, Abdullah-Al-Zubaer Imran, Adam Wang et al.

Semi-supervised learning via learning from limited quantities of labeled data has been investigated as an alternative to supervised counterparts. Maximizing knowledge gains from copious unlabeled data benefit semi-supervised learning settings. Moreover, learning multiple tasks within the same model further improves model generalizability. We propose a novel multitask learning model, namely MultiMix, which jointly learns disease classification and anatomical segmentation in a sparingly supervised manner, while preserving explainability through bridge saliency between the two tasks. Our extensive experimentation with varied quantities of labeled data in the training sets justify the effectiveness of our multitasking model for the classification of pneumonia and segmentation of lungs from chest X-ray images. Moreover, both in-domain and cross-domain evaluations across the tasks further showcase the potential of our model to adapt to challenging generalization scenarios.

Abdullah-Al-Zubaer Imran, Chao Huang, Hui Tang et al.

Scoliosis is a congenital disease that causes lateral curvature in the spine. Its assessment relies on the identification and localization of vertebrae in spinal X-ray images, conventionally via tedious and time-consuming manual radiographic procedures that are prone to subjectivity and observational variability. Reliability can be improved through the automatic detection and localization of spinal landmarks. To guide a CNN in the learning of spinal shape while detecting landmarks in X-ray images, we propose a novel loss based on a bipartite distance (BPD) measure, and show that it consistently improves landmark detection performance.

Abdullah-Al-Zubaer Imran, Demetri Terzopoulos

Medical image computing has advanced rapidly with the advent of deep learning techniques such as convolutional neural networks. Deep convolutional neural networks can perform exceedingly well given full supervision. However, the success of such fully-supervised models for various image analysis tasks (e.g., anatomy or lesion segmentation from medical images) is limited to the availability of massive amounts of labeled data. Given small sample sizes, such models are prohibitively data biased with large domain shift. To tackle this problem, we propose a novel end-to-end medical image segmentation model, namely Progressive Adversarial Semantic Segmentation (PASS), which can make improved segmentation predictions without requiring any domain-specific data during training time. Our extensive experimentation with 8 public diabetic retinopathy and chest X-ray datasets, confirms the effectiveness of PASS for accurate vascular and pulmonary segmentation, both for in-domain and cross-domain evaluations.

Abdullah-Al-Zubaer Imran, Chao Huang, Hui Tang et al.

Semi-supervised learning has recently been attracting attention as an alternative to fully supervised models that require large pools of labeled data. Moreover, optimizing a model for multiple tasks can provide better generalizability than single-task learning. Leveraging self-supervision and adversarial training, we propose a novel general purpose semi-supervised, multiple-task model---namely, self-supervised, semi-supervised, multitask learning (S$^4$MTL)---for accomplishing two important tasks in medical imaging, segmentation and diagnostic classification. Experimental results on chest and spine X-ray datasets suggest that our S$^4$MTL model significantly outperforms semi-supervised single task, semi/fully-supervised multitask, and fully-supervised single task models, even with a 50\% reduction of class and segmentation labels. We hypothesize that our proposed model can be effective in tackling limited annotation problems for joint training, not only in medical imaging domains, but also for general-purpose vision tasks.

Abdullah-Al-Zubaer Imran, Chao Huang, Hui Tang et al.

Scoliosis is a congenital disease in which the spine is deformed from its normal shape. Measurement of scoliosis requires labeling and identification of vertebrae in the spine. Spine radiographs are the most cost-effective and accessible modality for imaging the spine. Reliable and accurate vertebrae segmentation in spine radiographs is crucial in image-guided spinal assessment, disease diagnosis, and treatment planning. Conventional assessments rely on tedious and time-consuming manual measurement, which is subject to inter-observer variability. A fully automatic method that can accurately identify and segment the associated vertebrae is unavailable in the literature. Leveraging a carefully-adjusted U-Net model with progressive side outputs, we propose an end-to-end segmentation model that provides a fully automatic and reliable segmentation of the vertebrae associated with scoliosis measurement. Our experimental results from a set of anterior-posterior spine X-Ray images indicate that our model, which achieves an average Dice score of 0.993, promises to be an effective tool in the identification and labeling of spinal vertebrae, eventually helping doctors in the reliable estimation of scoliosis. Moreover, estimation of Cobb angles from the segmented vertebrae further demonstrates the effectiveness of our model.

Abdullah-Al-Zubaer Imran, Demetri Terzopoulos

Discriminative models that require full supervision are inefficacious in the medical imaging domain when large labeled datasets are unavailable. By contrast, generative modeling---i.e., learning data generation and classification---facilitates semi-supervised training with limited labeled data. Moreover, generative modeling can be advantageous in accomplishing multiple objectives for better generalization. We propose a novel multi-task learning model for jointly learning a classifier and a segmentor, from chest X-ray images, through semi-supervised learning. In addition, we propose a new loss function that combines absolute KL divergence with Tversky loss (KLTV) to yield faster convergence and better segmentation performance. Based on our experimental results using a novel segmentation model, an Adversarial Pyramid Progressive Attention U-Net (APPAU-Net), we hypothesize that KLTV can be more effective for generalizing multi-tasking models while being competitive in segmentation-only tasks.

Abdullah-Al-Zubaer Imran, Demetri Terzopoulos

The unsupervised training of GANs and VAEs has enabled them to generate realistic images mimicking real-world distributions and perform image-based unsupervised clustering or semi-supervised classification. Combining the power of these two generative models, we introduce Multi-Adversarial Variational autoEncoder Networks (MAVENs), a novel network architecture that incorporates an ensemble of discriminators in a VAE-GAN network, with simultaneous adversarial learning and variational inference. We apply MAVENs to the generation of synthetic images and propose a new distribution measure to quantify the quality of the generated images. Our experimental results using datasets from the computer vision and medical imaging domains---Street View House Numbers, CIFAR-10, and Chest X-Ray datasets---demonstrate competitive performance against state-of-the-art semi-supervised models both in image generation and classification tasks.

Abdullah-Al-Zubaer Imran, Ali Hatamizadeh, Shilpa P. Ananth et al.

Reliable and automatic segmentation of lung lobes is important for diagnosis, assessment, and quantification of pulmonary diseases. The existing techniques are prohibitively slow, undesirably rely on prior (airway/vessel) segmentation, and/or require user interactions for optimal results. This work presents a reliable, fast, and fully automated lung lobe segmentation based on a progressive dense V-network (PDV-Net). The proposed method can segment lung lobes in one forward pass of the network, with an average runtime of 2 seconds using 1 Nvidia Titan XP GPU, eliminating the need for any prior atlases, lung segmentation or any subsequent user intervention. We evaluated our model using 84 chest CT scans from the LIDC and 154 pathological cases from the LTRC datasets. Our model achieved a Dice score of $0.939 \pm 0.02$ for the LIDC test set and $0.950 \pm 0.01$ for the LTRC test set, significantly outperforming a 2D U-net model and a 3D dense V-net. We further evaluated our model against 55 cases from the LOLA11 challenge, obtaining an average Dice score of 0.935---a performance level competitive to the best performing team with an average score of 0.938. Our extensive robustness analyses also demonstrate that our model can reliably segment both healthy and pathological lung lobes in CT scans from different vendors, and that our model is robust against configurations of CT scan reconstruction.