Edward Laurence

Charles Murphy, Edward Laurence, Antoine Allard

Forecasting the evolution of contagion dynamics is still an open problem to which mechanistic models only offer a partial answer. To remain mathematically or computationally tractable, these models must rely on simplifying assumptions, thereby limiting the quantitative accuracy of their predictions and the complexity of the dynamics they can model. Here, we propose a complementary approach based on deep learning where the effective local mechanisms governing a dynamic on a network are learned from time series data. Our graph neural network architecture makes very few assumptions about the dynamics, and we demonstrate its accuracy using different contagion dynamics of increasing complexity. By allowing simulations on arbitrary network structures, our approach makes it possible to explore the properties of the learned dynamics beyond the training data. Finally, we illustrate the applicability of our approach using real data of the COVID-19 outbreak in Spain. Our results demonstrate how deep learning offers a new and complementary perspective to build effective models of contagion dynamics on networks.

Edward Laurence, Charles Murphy, Guillaume St-Onge et al.

Small disturbances can trigger functional breakdowns in complex systems. A challenging task is to infer the structural cause of a disturbance in a networked system, soon enough to prevent a catastrophe. We present a graph neural network approach, borrowed from the deep learning paradigm, to infer structural perturbations from functional time series. We show our data-driven approach outperforms typical reconstruction methods while meeting the accuracy of Bayesian inference. We validate the versatility and performance of our approach with epidemic spreading, population dynamics, and neural dynamics, on various network structures: random networks, scale-free networks, 25 real food-web systems, and the C. Elegans connectome. Moreover, we report that our approach is robust to data corruption. This work uncovers a practical avenue to study the resilience of real-world complex systems.

Jean-Gabriel Young, Guillaume St-Onge, Edward Laurence et al.

Network growth processes can be understood as generative models of the structure and history of complex networks. This point of view naturally leads to the problem of network archaeology: reconstructing all the past states of a network from its structure---a difficult permutation inference problem. In this paper, we introduce a Bayesian formulation of network archaeology, with a generalization of preferential attachment as our generative mechanism. We develop a sequential Monte Carlo algorithm to evaluate the posterior averages of this model, as well as an efficient heuristic that uncovers a history well correlated with the true one, in polynomial time. We use these methods to identify and characterize a phase transition in the quality of the reconstructed history, when they are applied to artificial networks generated by the model itself. Despite the existence of a no-recovery phase, we find that nontrivial inference is possible in a large portion of the parameter space as well as on empirical data.