Nianlong Gu

Nianlong Gu, Richard H. R. Hahnloser

Scientific writing involves retrieving, summarizing, and citing relevant papers, which can be time-consuming processes in large and rapidly evolving fields. By making these processes inter-operable, natural language processing (NLP) provides opportunities for creating end-to-end assistive writing tools. We propose SciLit, a pipeline that automatically recommends relevant papers, extracts highlights, and suggests a reference sentence as a citation of a paper, taking into consideration the user-provided context and keywords. SciLit efficiently recommends papers from large databases of hundreds of millions of papers using a two-stage pre-fetching and re-ranking literature search system that flexibly deals with addition and removal of a paper database. We provide a convenient user interface that displays the recommended papers as extractive summaries and that offers abstractively-generated citing sentences which are aligned with the provided context and which mention the chosen keyword(s). Our assistive tool for literature discovery and scientific writing is available at https://scilit.vercel.app

Nianlong Gu, Richard H. R. Hahnloser

Citation generation aims to generate a citation sentence that refers to a chosen paper in the context of a manuscript. However, a rigid citation generation process is at odds with an author's desire to control specific attributes, such as 1) the citation intent, e.g., either introducing background information or comparing results, and 2) keywords that should appear in the citation text. To provide these degrees of controllability during citation generation, we propose to integrate the manuscript context, the context of the referenced paper, and the desired control attributes into a structured template and use it to fine-tune a language model (LM) via next-token prediction. We then utilize Proximal Policy Optimization to directly optimize the LM in favor of a high score of our proposed controllability metric. The proposed workflow harmoniously combines citation attribute suggestion and conditional citation generation into one LM, allowing for better user control.

Yingqiang Gao, Jhony Prada, Nianlong Gu et al.

Large Language Models (LLMs) produce eloquent texts but often the content they generate needs to be verified. Traditional information retrieval systems can assist with this task, but most systems have not been designed with LLM-generated queries in mind. As such, there is a compelling need for integrated systems that provide both retrieval and generation functionality within a single user interface. We present MODOC, a modular user interface that leverages the capabilities of LLMs and provides assistance with detecting their confabulations, promoting integrity in scientific writing. MODOC represents a significant step forward in scientific writing assistance. Its modular architecture supports flexible functions for retrieving information and for writing and generating text in a single, user-friendly interface.

Nianlong Gu, Yingqiang Gao, Richard H. R. Hahnloser

We introduce MemSum-DQA, an efficient system for document question answering (DQA) that leverages MemSum, a long document extractive summarizer. By prefixing each text block in the parsed document with the provided question and question type, MemSum-DQA selectively extracts text blocks as answers from documents. On full-document answering tasks, this approach yields a 9% improvement in exact match accuracy over prior state-of-the-art baselines. Notably, MemSum-DQA excels in addressing questions related to child-relationship understanding, underscoring the potential of extractive summarization techniques for DQA tasks.

Xiaoliang Luo, Akilles Rechardt, Guangzhi Sun et al.

Scientific discoveries often hinge on synthesizing decades of research, a task that potentially outstrips human information processing capacities. Large language models (LLMs) offer a solution. LLMs trained on the vast scientific literature could potentially integrate noisy yet interrelated findings to forecast novel results better than human experts. To evaluate this possibility, we created BrainBench, a forward-looking benchmark for predicting neuroscience results. We find that LLMs surpass experts in predicting experimental outcomes. BrainGPT, an LLM we tuned on the neuroscience literature, performed better yet. Like human experts, when LLMs were confident in their predictions, they were more likely to be correct, which presages a future where humans and LLMs team together to make discoveries. Our approach is not neuroscience-specific and is transferable to other knowledge-intensive endeavors.

Emmanuel Bauer, Dominik Stammbach, Nianlong Gu et al.

This paper tackles the task of legal extractive summarization using a dataset of 430K U.S. court opinions with key passages annotated. According to automated summary quality metrics, the reinforcement-learning-based MemSum model is best and even out-performs transformer-based models. In turn, expert human evaluation shows that MemSum summaries effectively capture the key points of lengthy court opinions. Motivated by these results, we open-source our models to the general public. This represents progress towards democratizing law and making U.S. court opinions more accessible to the general public.

Yingqiang Gao, Fabian Winiger, Patrick Montjourides et al.

Religion and spirituality (R/S) are complex and highly domain-dependent concepts which have long confounded researchers and policymakers. Due to their context-specificity, R/S are difficult to operationalize in conventional archival search strategies, particularly when datasets are very large, poorly accessible, and marked by information noise. As a result, considerable time investments and specialist knowledge is often needed to extract actionable insights related to R/S from general archival sources, increasing reliance on published literature and manual desk reviews. To address this challenge, we present SpiritRAG, an interactive Question Answering (Q&A) system based on Retrieval-Augmented Generation (RAG). Built using 7,500 United Nations (UN) resolution documents related to R/S in the domains of health and education, SpiritRAG allows researchers and policymakers to conduct complex, context-sensitive database searches of very large datasets using an easily accessible, chat-based web interface. SpiritRAG is lightweight to deploy and leverages both UN documents and user provided documents as source material. A pilot test and evaluation with domain experts on 100 manually composed questions demonstrates the practical value and usefulness of SpiritRAG.

Yingqiang Gao, Jessica Lam, Nianlong Gu et al.

The abstracts of scientific papers consist of premises and conclusions. Structured abstracts explicitly highlight the conclusion sentences, whereas non-structured abstracts may have conclusion sentences at uncertain positions. This implicit nature of conclusion positions makes the automatic segmentation of scientific abstracts into premises and conclusions a challenging task. In this work, we empirically explore using Normalized Mutual Information (NMI) for abstract segmentation. We consider each abstract as a recurrent cycle of sentences and place segmentation boundaries by greedily optimizing the NMI score between premises and conclusions. On non-structured abstracts, our proposed unsupervised approach GreedyCAS achieves the best performance across all evaluation metrics; on structured abstracts, GreedyCAS outperforms all baseline methods measured by $P_k$. The strong correlation of NMI to our evaluation metrics reveals the effectiveness of NMI for abstract segmentation.

Nianlong Gu, Yingqiang Gao, Richard H. R. Hahnloser

The goal of local citation recommendation is to recommend a missing reference from the local citation context and optionally also from the global context. To balance the tradeoff between speed and accuracy of citation recommendation in the context of a large-scale paper database, a viable approach is to first prefetch a limited number of relevant documents using efficient ranking methods and then to perform a fine-grained reranking using more sophisticated models. In that vein, BM25 has been found to be a tough-to-beat approach to prefetching, which is why recent work has focused mainly on the reranking step. Even so, we explore prefetching with nearest neighbor search among text embeddings constructed by a hierarchical attention network. When coupled with a SciBERT reranker fine-tuned on local citation recommendation tasks, our hierarchical Attention encoder (HAtten) achieves high prefetch recall for a given number of candidates to be reranked. Consequently, our reranker requires fewer prefetch candidates to rerank, yet still achieves state-of-the-art performance on various local citation recommendation datasets such as ACL-200, FullTextPeerRead, RefSeer, and arXiv.

Nianlong Gu, Elliott Ash, Richard H. R. Hahnloser

We introduce MemSum (Multi-step Episodic Markov decision process extractive SUMmarizer), a reinforcement-learning-based extractive summarizer enriched at each step with information on the current extraction history. When MemSum iteratively selects sentences into the summary, it considers a broad information set that would intuitively also be used by humans in this task: 1) the text content of the sentence, 2) the global text context of the rest of the document, and 3) the extraction history consisting of the set of sentences that have already been extracted. With a lightweight architecture, MemSum obtains state-of-the-art test-set performance (ROUGE) in summarizing long documents taken from PubMed, arXiv, and GovReport. Ablation studies demonstrate the importance of local, global, and history information. A human evaluation confirms the high quality and low redundancy of the generated summaries, stemming from MemSum's awareness of extraction history.

Onur Gökçe, Jonathan Prada, Nikola I. Nikolov et al.

Each claim in a research paper requires all relevant prior knowledge to be discovered, assimilated, and appropriately cited. However, despite the availability of powerful search engines and sophisticated text editing software, discovering relevant papers and integrating the knowledge into a manuscript remain complex tasks associated with high cognitive load. To define comprehensive search queries requires strong motivation from authors, irrespective of their familiarity with the research field. Moreover, switching between independent applications for literature discovery, bibliography management, reading papers, and writing text burdens authors further and interrupts their creative process. Here, we present a web application that combines text editing and literature discovery in an interactive user interface. The application is equipped with a search engine that couples Boolean keyword filtering with nearest neighbor search over text embeddings, providing a discovery experience tuned to an author's manuscript and his interests. Our application aims to take a step towards more enjoyable and effortless academic writing. The demo of the application (https://SciEditorDemo2020.herokuapp.com/) and a short video tutorial (https://youtu.be/pkdVU60IcRc) are available online.