Tim Sainburg

Tim Sainburg, Caleb Weinreb

LLMs gain competence by predicting words in human text, which often reflects how people perform tasks. Consequently, coupling an LLM to an engineered runtime turns prediction into control: outputs trigger interventions that enact goal-oriented behavior. We argue that a central design lever is where control resides in these systems. Brains embed prediction within layered feedback controllers calibrated by the consequences of action. By contrast, LLM agents implement Cartesian agency: a learned core coupled to an engineered runtime via a symbolic interface that externalizes control state and policies. The split enables bootstrapping, modularity, and governance, but can induce sensitivity and bottlenecks. We outline bounded services, Cartesian agents, and integrated agents as contrasting approaches to control that trade off autonomy, robustness, and oversight.

Bernard Koch, Tim Sainburg, Pablo Geraldo et al.

This review systematizes the emerging literature for causal inference using deep neural networks under the potential outcomes framework. It provides an intuitive introduction on how deep learning can be used to estimate/predict heterogeneous treatment effects and extend causal inference to settings where confounding is non-linear, time varying, or encoded in text, networks, and images. To maximize accessibility, we also introduce prerequisite concepts from causal inference and deep learning. The survey differs from other treatments of deep learning and causal inference in its sharp focus on observational causal estimation, its extended exposition of key algorithms, and its detailed tutorials for implementing, training, and selecting among deep estimators in Tensorflow 2 available at github.com/kochbj/Deep-Learning-for-Causal-Inference.

Tim Sainburg, Marvin Thielk, Brad Theilman et al.

We present a neural network architecture based upon the Autoencoder (AE) and Generative Adversarial Network (GAN) that promotes a convex latent distribution by training adversarially on latent space interpolations. By using an AE as both the generator and discriminator of a GAN, we pass a pixel-wise error function across the discriminator, yielding an AE which produces non-blurry samples that match both high- and low-level features of the original images. Interpolations between images in this space remain within the latent-space distribution of real images as trained by the discriminator, and therfore preserve realistic resemblances to the network inputs. Code available at https://github.com/timsainb/GAIA

Tim Sainburg, Leland McInnes, Timothy Q Gentner

UMAP is a non-parametric graph-based dimensionality reduction algorithm using applied Riemannian geometry and algebraic topology to find low-dimensional embeddings of structured data. The UMAP algorithm consists of two steps: (1) Compute a graphical representation of a dataset (fuzzy simplicial complex), and (2) Through stochastic gradient descent, optimize a low-dimensional embedding of the graph. Here, we extend the second step of UMAP to a parametric optimization over neural network weights, learning a parametric relationship between data and embedding. We first demonstrate that Parametric UMAP performs comparably to its non-parametric counterpart while conferring the benefit of a learned parametric mapping (e.g. fast online embeddings for new data). We then explore UMAP as a regularization, constraining the latent distribution of autoencoders, parametrically varying global structure preservation, and improving classifier accuracy for semi-supervised learning by capturing structure in unlabeled data. Google Colab walkthrough: https://colab.research.google.com/drive/1WkXVZ5pnMrm17m0YgmtoNjM_XHdnE5Vp?usp=sharing