Bárbara C. Benato

Bárbara Caroline Benato, Alexandre Xavier Falcão, Alexandru-Cristian Telea

Lacking supervised data is an issue while training deep neural networks (DNNs), mainly when considering medical and biological data where supervision is expensive. Recently, Embedded Pseudo-Labeling (EPL) addressed this problem by using a non-linear projection (t-SNE) from a feature space of the DNN to a 2D space, followed by semi-supervised label propagation using a connectivity-based method (OPFSemi). We argue that the performance of the final classifier depends on the data separation present in the latent space and visual separation present in the projection. We address this by first proposing to use contrastive learning to produce the latent space for EPL by two methods (SimCLR and SupCon) and by their combination, and secondly by showing, via an extensive set of experiments, the aforementioned correlations between data separation, visual separation, and classifier performance. We demonstrate our results by the classification of five real-world challenging image datasets of human intestinal parasites with only 1% supervised samples.

Márcus Vinícius Lobo Costa, Sherlon Almeida da Silva, Bárbara Caroline Benato et al.

This paper addresses the challenges in representation learning of 3D shape features by investigating state-of-the-art backbones paired with both contrastive supervised and self-supervised learning objectives. Computer vision methods struggle with recognizing 3D objects from 2D images, often requiring extensive labeled data and relying on Convolutional Neural Networks (CNNs) that may overlook crucial shape relationships. Our work demonstrates that Vision Transformers (ViTs) based architectures, when paired with modern contrastive objectives, achieve promising results in multi-view 3D analysis on our downstream tasks, unifying contrastive and 3D shape understanding pipelines. For example, supervised contrastive losses reached about 90.6% accuracy on ModelNet10. The use of ViTs and contrastive learning, leveraging ViTs' ability to understand overall shapes and contrastive learning's effectiveness, overcomes the need for extensive labeled data and the limitations of CNNs in capturing crucial shape relationships. The success stems from capturing global shape semantics via ViTs and refining local discriminative features through contrastive optimization. Importantly, our approach is empirical, as it is grounded on extensive experimental evaluation to validate the effectiveness of combining ViTs with contrastive objectives for 3D representation learning.

Mateus Roder, Leandro A. Passos, Luiz Carlos Felix Ribeiro et al.

Currently, approximately $4$ billion people are infected by intestinal parasites worldwide. Diseases caused by such infections constitute a public health problem in most tropical countries, leading to physical and mental disorders, and even death to children and immunodeficient individuals. Although subjected to high error rates, human visual inspection is still in charge of the vast majority of clinical diagnoses. In the past years, some works addressed intelligent computer-aided intestinal parasites classification, but they usually suffer from misclassification due to similarities between parasites and fecal impurities. In this paper, we introduce Deep Belief Networks to the context of automatic intestinal parasites classification. Experiments conducted over three datasets composed of eggs, larvae, and protozoa provided promising results, even considering unbalanced classes and also fecal impurities.

Barbara C. Benato, Italos E. de Souza, Felipe L. Galvão et al.

A technique named Feature Learning from Image Markers (FLIM) was recently proposed to estimate convolutional filters, with no backpropagation, from strokes drawn by a user on very few images (e.g., 1-3) per class, and demonstrated for coconut-tree image classification. This paper extends FLIM for fully connected layers and demonstrates it on different image classification problems. The work evaluates marker selection from multiple users and the impact of adding a fully connected layer. The results show that FLIM-based convolutional neural networks can outperform the same architecture trained from scratch by backpropagation.

Barbara Caroline Benato, Jancarlo Ferreira Gomes, Alexandru Cristian Telea et al.

While convolutional neural networks need large labeled sets for training images, expert human supervision of such datasets can be very laborious. Proposed solutions propagate labels from a small set of supervised images to a large set of unsupervised ones to obtain sufficient truly-and-artificially labeled samples to train a deep neural network model. Yet, such solutions need many supervised images for validation. We present a loop in which a deep neural network (VGG-16) is trained from a set with more correctly labeled samples along iterations, created by using t-SNE to project the features of its last max-pooling layer into a 2D embedded space in which labels are propagated using the Optimum-Path Forest semi-supervised classifier. As the labeled set improves along iterations, it improves the features of the neural network. We show that this can significantly improve classification results on test data (using only 1\% to 5\% of supervised samples) of three private challenging datasets and two public ones.

Barbara Caroline Benato, Jancarlo Ferreira Gomes, Alexandru Cristian Telea et al.

Data annotation using visual inspection (supervision) of each training sample can be laborious. Interactive solutions alleviate this by helping experts propagate labels from a few supervised samples to unlabeled ones based solely on the visual analysis of their feature space projection (with no further sample supervision). We present a semi-automatic data annotation approach based on suitable feature space projection and semi-supervised label estimation. We validate our method on the popular MNIST dataset and on images of human intestinal parasites with and without fecal impurities, a large and diverse dataset that makes classification very hard. We evaluate two approaches for semi-supervised learning from the latent and projection spaces, to choose the one that best reduces user annotation effort and also increases classification accuracy on unseen data. Our results demonstrate the added-value of visual analytics tools that combine complementary abilities of humans and machines for more effective machine learning.