Samuel Meehan

Daniel S. Katz, Sudhir Malik, Mark S. Neubauer et al.

New facilities of the 2020s, such as the High Luminosity Large Hadron Collider (HL-LHC), will be relevant through at least the 2030s. This means that their software efforts and those that are used to analyze their data need to consider sustainability to enable their adaptability to new challenges, longevity, and efficiency, over at least this period. This will help ensure that this software will be easier to develop and maintain, that it remains available in the future on new platforms, that it meets new needs, and that it is as reusable as possible. This report discusses a virtual half-day workshop on "Software Sustainability and High Energy Physics" that aimed 1) to bring together experts from HEP as well as those from outside to share their experiences and practices, and 2) to articulate a vision that helps the Institute for Research and Innovation in Software for High Energy Physics (IRIS-HEP) to create a work plan to implement elements of software sustainability. Software sustainability practices could lead to new collaborations, including elements of HEP software being directly used outside the field, and, as has happened more frequently in recent years, to HEP developers contributing to software developed outside the field rather than reinventing it. A focus on and skills related to sustainable software will give HEP software developers an important skill that is essential to careers in the realm of software, inside or outside HEP. The report closes with recommendations to improve software sustainability in HEP, aimed at the HEP community via IRIS-HEP and the HEP Software Foundation (HSF).

Qinghan Xue, Xiaoran Wang, Samuel Meehan et al.

Obesity is a serious public health concern world-wide, which increases the risk of many diseases, including hypertension, stroke, and type 2 diabetes. To tackle this problem, researchers across the health ecosystem are collecting diverse types of data, which includes biomedical, behavioral and activity, and utilizing machine learning techniques to mine hidden patterns for obesity status improvement prediction. While existing machine learning methods such as Recurrent Neural Networks (RNNs) can provide exceptional results, it is challenging to discover hidden patterns of the sequential data due to the irregular observation time instances. Meanwhile, the lack of understanding of why those learning models are effective also limits further improvements on their architectures. Thus, in this work, we develop a RNN based time-aware architecture to tackle the challenging problem of handling irregular observation times and relevant feature extractions from longitudinal patient records for obesity status improvement prediction. To improve the prediction performance, we train our model using two data sources: (i) electronic medical records containing information regarding lab tests, diagnoses, and demographics; (ii) continuous activity data collected from popular wearables. Evaluations of real-world data demonstrate that our proposed method can capture the underlying structures in users' time sequences with irregularities, and achieve an accuracy of 77-86% in predicting the obesity status improvement.