Hanxi Sun

Hanxi Sun, Jason Plawinski, Sajanth Subramaniam et al.

Sharing data from clinical studies can facilitate innovative data-driven research and ultimately lead to better public health. However, sharing biomedical data can put sensitive personal information at risk. This is usually solved by anonymization, which is a slow and expensive process. An alternative to anonymization is sharing a synthetic dataset that bears a behaviour similar to the real data but preserves privacy. As part of the collaboration between Novartis and the Oxford Big Data Institute, we generate a synthetic dataset based on COSENTYX (secukinumab) Ankylosing Spondylitis clinical study. We apply an Auxiliary Classifier GAN to generate synthetic MRIs of vertebral units. The images are conditioned on the VU location (cervical, thoracic and lumbar). In this paper, we present a method for generating a synthetic dataset and conduct an in-depth analysis on its properties along three key metrics: image fidelity, sample diversity and dataset privacy.

Tianyang Hu, Zixiang Chen, Hanxi Sun et al.

We propose two novel samplers to generate high-quality samples from a given (un-normalized) probability density. Motivated by the success of generative adversarial networks, we construct our samplers using deep neural networks that transform a reference distribution to the target distribution. Training schemes are developed to minimize two variations of the Stein discrepancy, which is designed to work with un-normalized densities. Once trained, our samplers are able to generate samples instantaneously. We show that the proposed methods are theoretically sound and experience fewer convergence issues compared with traditional sampling approaches according to our empirical studies.