Matteo Bastico

Matteo Bastico, David Ryckelynck, Laurent Corté et al.

When it comes to clinical images, automatic segmentation has a wide variety of applications and a considerable diversity of input domains, such as different types of Magnetic Resonance Images (MRIs) and Computerized Tomography (CT) scans. This heterogeneity is a challenge for cross-modality algorithms that should equally perform independently of the input image type fed to them. Often, segmentation models are trained using a single modality, preventing generalization to other types of input data without resorting to transfer learning techniques. Furthermore, the multi-modal or cross-modality architectures proposed in the literature frequently require registered images, which are not easy to collect in clinical environments, or need additional processing steps, such as synthetic image generation. In this work, we propose a simple framework to achieve fair image segmentation of multiple modalities using a single conditional model that adapts its normalization layers based on the input type, trained with non-registered interleaved mixed data. We show that our framework outperforms other cross-modality segmentation methods, when applied to the same 3D UNet baseline model, on the Multi-Modality Whole Heart Segmentation Challenge. Furthermore, we define the Conditional Vision Transformer (C-ViT) encoder, based on the proposed cross-modality framework, and we show that it brings significant improvements to the resulting segmentation, up to 6.87\% of Dice accuracy, with respect to its baseline reference. The code to reproduce our experiments and the trained model weights are available at https://github.com/matteo-bastico/MI-Seg.

Matteo Bastico, David Ryckelynck, Laurent Corté et al.

As 3D point clouds become a cornerstone of modern technology, the need for sophisticated generative models and reliable evaluation metrics has grown exponentially. In this work, we first expose that some commonly used metrics for evaluating generated point clouds, particularly those based on Chamfer Distance (CD), lack robustness against defects and fail to capture geometric fidelity and local shape consistency when used as quality indicators. We further show that introducing samples alignment prior to distance calculation and replacing CD with Density-Aware Chamfer Distance (DCD) are simple yet essential steps to ensure the consistency and robustness of point cloud generative model evaluation metrics. While existing metrics primarily focus on directly comparing 3D Euclidean coordinates, we present a novel metric, named Surface Normal Concordance (SNC), which approximates surface similarity by comparing estimated point normals. This new metric, when combined with traditional ones, provides a more comprehensive evaluation of the quality of generated samples. Finally, leveraging recent advancements in transformer-based models for point cloud analysis, such as serialized patch attention , we propose a new architecture for generating high-fidelity 3D structures, the Diffusion Point Transformer. We perform extensive experiments and comparisons on the ShapeNet dataset, showing that our model outperforms previous solutions, particularly in terms of quality of generated point clouds, achieving new state-of-the-art. Code available at https://github.com/matteo-bastico/DiffusionPointTransformer.

Matteo Bastico, Etienne Decencière, Laurent Corté et al.

Point cloud matching, a crucial technique in computer vision, medical and robotics fields, is primarily concerned with finding correspondences between pairs of point clouds or voxels. In some practical scenarios, emphasizing local differences is crucial for accurately identifying a correct match, thereby enhancing the overall robustness and reliability of the matching process. Commonly used shape descriptors have several limitations and often fail to provide meaningful local insights about the paired geometries. In this work, we propose a new technique, based on graph Laplacian eigenmaps, to match point clouds by taking into account fine local structures. To deal with the order and sign ambiguity of Laplacian eigenmaps, we introduce a new operator, called Coupled Laplacian (https://github.com/matteo-bastico/CoupLap), that allows to easily generate aligned eigenspaces for multiple registered geometries. We show that the similarity between those aligned high-dimensional spaces provides a locally meaningful score to match shapes. We firstly evaluate the performance of the proposed technique in a point-wise manner, focusing on the task of object anomaly localization on the MVTec 3D-AD dataset. Additionally, we define a new medical task, called automatic Bone Side Estimation (BSE), which we address through a global similarity score derived from coupled eigenspaces. In order to test it, we propose a benchmark collecting bone surface structures from various public datasets. Our matching technique, based on Coupled Laplacian, outperforms other methods by reaching an impressive accuracy on both tasks.

Matteo Bastico, Pierre Onghena, David Ryckelynck et al.

Accurate identification of anatomical landmarks is crucial for various medical applications. Traditional manual landmarking is time-consuming and prone to inter-observer variability, while rule-based methods are often tailored to specific geometries or limited sets of landmarks. In recent years, anatomical surfaces have been effectively represented as point clouds, which are lightweight structures composed of spatial coordinates. Following this strategy and to overcome the limitations of existing landmarking techniques, we propose Landmark Point Transformer (LmPT), a method for automatic anatomical landmark detection on point clouds that can leverage homologous bones from different species for translational research. The LmPT model incorporates a conditioning mechanism that enables adaptability to different input types to conduct cross-species learning. We focus the evaluation of our approach on femoral landmarking using both human and newly annotated dog femurs, demonstrating its generalization and effectiveness across species. The code and dog femur dataset will be publicly available at: https://github.com/Pierreoo/LandmarkPointTransformer.