APDec 6, 2016
Numerical Study of a Particle Method for Gradient FlowsJ. A. Carrillo, Y. Huang, F. S. Patacchini et al.
We study the numerical behaviour of a particle method for gradient flows involving linear and nonlinear diffusion. This method relies on the discretisation of the energy via non-overlapping balls centred at the particles. The resulting scheme preserves the gradient flow structure at the particle level, and enables us to obtain a gradient descent formulation after time discretisation. We give several simulations to illustrate the validity of this method, as well as a detailed study of one-dimensional aggregation-diffusion equations.
MEFeb 25, 2022
Flexible variable selection in the presence of missing dataB. D. Williamson, Y. Huang
In many applications, it is of interest to identify a parsimonious set of features, or panel, from multiple candidates that achieves a desired level of performance in predicting a response. This task is often complicated in practice by missing data arising from the sampling design or other random mechanisms. Most recent work on variable selection in missing data contexts relies in some part on a finite-dimensional statistical model, e.g., a generalized or penalized linear model. In cases where this model is misspecified, the selected variables may not all be truly scientifically relevant and can result in panels with suboptimal classification performance. To address this limitation, we propose a nonparametric variable selection algorithm combined with multiple imputation to develop flexible panels in the presence of missing-at-random data. We outline strategies based on the proposed algorithm that achieve control of commonly used error rates. Through simulations, we show that our proposal has good operating characteristics and results in panels with higher classification and variable selection performance compared to several existing penalized regression approaches in cases where a generalized linear model is misspecified. Finally, we use the proposed method to develop biomarker panels for separating pancreatic cysts with differing malignancy potential in a setting where complicated missingness in the biomarkers arose due to limited specimen volumes.
LGDec 17, 2018
A Robust Deep Learning Approach for Automatic Classification of Seizures Against Non-seizuresX. Yao, X. Li, Q. Ye et al.
Identifying epileptic seizures through analysis of the electroencephalography (EEG) signal becomes a standard method for the diagnosis of epilepsy. Manual seizure identification on EEG by trained neurologists is time-consuming, labor-intensive and error-prone, and a reliable automatic seizure/non-seizure classification method is needed. One of the challenges in automatic seizure/non-seizure classification is that seizure morphologies exhibit considerable variabilities. In order to capture essential seizure patterns, this paper leverages an attention mechanism and a bidirectional long short-term memory (BiLSTM) to exploit both spatial and temporal discriminating features and overcome seizure variabilities. The attention mechanism is to capture spatial features according to the contributions of different brain regions to seizures. The BiLSTM is to extract discriminating temporal features in the forward and the backward directions. Cross-validation experiments and cross-patient experiments over the noisy data of CHB-MIT are performed to evaluate our proposed approach. The obtained average sensitivity of 87.00%, specificity of 88.60% and precision of 88.63% in cross-validation experiments are higher than using the current state-of-the-art methods, and the standard deviations of our approach are lower. The evaluation results of cross-patient experiments indicate that, our approach has better performance compared with the current state-of-the-art methods and is more robust across patients.