Cecilia Jarne

Cecilia Jarne

Training neural networks to perform different tasks is relevant across various disciplines. In particular, Recurrent Neural Networks (RNNs) are of great interest in Computational Neuroscience. Open-source frameworks dedicated to Machine Learning, such as Tensorflow and Keras have produced significant changes in the development of technologies that we currently use. This work aims to make a significant contribution by comprehensively investigating and describing the implementation of a temporal processing task, specifically a 3-bit Flip Flop memory. We delve into the entire modelling process, encompassing equations, task parametrization, and software development. The obtained networks are meticulously analyzed to elucidate dynamics, aided by an array of visualization and analysis tools. Moreover, the provided code is versatile enough to facilitate the modelling of diverse tasks and systems. Furthermore, we present how memory states can be efficiently stored in the vertices of a cube in the dimensionally reduced space, supplementing previous results with a distinct approach.

Cecilia Jarne

Signal amplitude envelope allows to obtain information of the signal features for different applications. It is widely used to pre-process sound and other signals of physiological origin in human or animal studies. In order to obtain signal envelope, a fast and simple algorithm is proposed based on peak detection. The procedure presented here is quite straightforward and can be used in different applications of time series analysis. It can be applied in signals with different origin and frequency content. This algorithm presented is implemented based on python libraries. An open source code is also provided. Aspects on the parameter selection are discussed to adapt the same method for different applications. Also traditional methods are revisited and compared with the one proposed here.

Cecilia Jarne, Rodrigo Laje

Recurrent Neural Networks (RNNs) are frequently used to model aspects of brain function and structure. In this work, we trained small fully-connected RNNs to perform temporal and flow control tasks with time-varying stimuli. Our results show that different RNNs can solve the same task by converging to different underlying dynamics and also how the performance gracefully degrades as either network size is decreased, interval duration is increased, or connectivity damage is increased. For the considered tasks, we explored how robust the network obtained after training can be according to task parameterization. In the process, we developed a framework that can be useful to parameterize other tasks of interest in computational neuroscience. Our results are useful to quantify different aspects of the models, which are normally used as black boxes and need to be understood in order to model the biological response of cerebral cortex areas.

Cecilia Jarne, Pablo N. Alcain

In the time series analysis field, there is not a unique recipe for studying signal similarities. On the other hand, averaging signals of the same nature is an essential tool in the analysis of different kinds of data. Here we propose a method to align and average segments of time series with similar patterns. A simple implementation based on \textit{python} code is provided for the procedure. The analysis was inspired by the study of canary sound syllables, but it is possible to apply it in semi periodic signals of different nature and not necessarily related to sounds.