Oznur Tastan

Ali Osman Berk Sapci, Oznur Tastan, Reyyan Yeniterzi

Named entity recognition (NER) aims to identify mentions of named entities in an unstructured text and classify them into predefined named entity classes. While deep learning-based pre-trained language models help to achieve good predictive performances in NER, many domain-specific NER applications still call for a substantial amount of labeled data. Active learning (AL), a general framework for the label acquisition problem, has been used for NER tasks to minimize the annotation cost without sacrificing model performance. However, the heavily imbalanced class distribution of tokens introduces challenges in designing effective AL querying methods for NER. We propose several AL sentence query evaluation functions that pay more attention to potential positive tokens, and evaluate these proposed functions with both sentence-based and token-based cost evaluation strategies. We also propose a better data-driven normalization approach to penalize sentences that are too long or too short. Our experiments on three datasets from different domains reveal that the proposed approach reduces the number of annotated tokens while achieving better or comparable prediction performance with conventional methods.

Nour Almadhoun Alserr, Gulce Kale, Onur Mutlu et al.

Motivation: Researchers need a rich trove of genomic datasets that they can leverage to gain a better understanding of the genetic basis of the human genome and identify associations between phenotypes and specific parts of DNA. However, sharing genomic datasets that include sensitive genetic or medical information of individuals can lead to serious privacy-related consequences if data lands in the wrong hands. Restricting access to genomic datasets is one solution, but this greatly reduces their usefulness for research purposes. To allow sharing of genomic datasets while addressing these privacy concerns, several studies propose privacy-preserving mechanisms for data sharing. Differential privacy (DP) is one of such mechanisms that formalize rigorous mathematical foundations to provide privacy guarantees while sharing aggregated statistical information about a dataset. However, it has been shown that the original privacy guarantees of DP-based solutions degrade when there are dependent tuples in the dataset, which is a common scenario for genomic datasets (due to the existence of family members). Results: In this work, we introduce a near-optimal mechanism to mitigate the vulnerabilities of the inference attacks on differentially private query results from genomic datasets including dependent tuples. We propose a utility-maximizing and privacy-preserving approach for sharing statistics by hiding selective SNPs of the family members as they participate in a genomic dataset. By evaluating our mechanism on a real-world genomic dataset, we empirically demonstrate that our proposed mechanism can achieve up to 40% better privacy than state-of-the-art DP-based solutions, while near-optimally minimizing the utility loss.

Cem Orhan, Oznur Tastan

In many real-world machine learning applications, unlabeled data are abundant whereas class labels are expensive and scarce. An active learner aims to obtain a model of high accuracy with as few labeled instances as possible by effectively selecting useful examples for labeling. We propose a new selection criterion that is based on statistical leverage scores and present two novel active learning methods based on this criterion: ALEVS for querying single example at each iteration and DBALEVS for querying a batch of examples. To assess the representativeness of the examples in the pool, ALEVS and DBALEVS use the statistical leverage scores of the kernel matrices computed on the examples of each class. Additionally, DBALEVS selects a diverse a set of examples that are highly representative but are dissimilar to already labeled examples through maximizing a submodular set function defined with the statistical leverage scores and the kernel matrix computed on the pool of the examples. The submodularity property of the set scoring function let us identify batches with a constant factor approximate to the optimal batch in an efficient manner. Our experiments on diverse datasets show that querying based on leverage scores is a powerful strategy for active learning.