Ruihan Xu

Lin Yao, Ruihan Xu, Zhifeng Gao et al. · microsoft-research

The central problem in cryo-electron microscopy (cryo-EM) is to recover the 3D structure from noisy 2D projection images which requires estimating the missing projection angles (poses). Recent methods attempted to solve the 3D reconstruction problem with the autoencoder architecture, which suffers from the latent vector space sampling problem and frequently produces suboptimal pose inferences and inferior 3D reconstructions. Here we present an improved autoencoder architecture called ACE (Asymmetric Complementary autoEncoder), based on which we designed the ACE-EM method for cryo-EM 3D reconstructions. Compared to previous methods, ACE-EM reached higher pose space coverage within the same training time and boosted the reconstruction performance regardless of the choice of decoders. With this method, the Nyquist resolution (highest possible resolution) was reached for 3D reconstructions of both simulated and experimental cryo-EM datasets. Furthermore, ACE-EM is the only amortized inference method that reached the Nyquist resolution.

Ruihan Xu, Haokui Zhang, Wenze Hu et al.

Transformers have shown great potential in various computer vision tasks. By borrowing design concepts from transformers, many studies revolutionized CNNs and showed remarkable results. This paper falls in this line of studies. Specifically, we propose a new convolutional neural network, ParCNetV2, that extends position-aware circular convolution (ParCNet) with oversized convolutions and bifurcate gate units to enhance attention. The oversized convolution employs a kernel with twice the input size to model long-range dependencies through a global receptive field. Simultaneously, it achieves implicit positional encoding by removing the shift-invariant property from convolution kernels, i.e., the effective kernels at different spatial locations are different when the kernel size is twice as large as the input size. The bifurcate gate unit implements an attention mechanism similar to self-attention in transformers. It is applied through element-wise multiplication of the two branches, one serves as feature transformation while the other serves as attention weights. Additionally, we introduce a uniform local-global convolution block to unify the design of the early and late stage convolution blocks. Extensive experiments demonstrate the superiority of our method over other convolutional neural networks and hybrid models that combine CNNs and transformers. Code will be released.

Zehong Ma, Ruihan Xu, Shiliang Zhang

Pixel diffusion generates images directly in pixel space in an end-to-end manner, avoiding the artifacts and bottlenecks introduced by VAEs in two-stage latent diffusion. However, it is challenging to optimize high-dimensional pixel manifolds that contain many perceptually irrelevant signals, leaving existing pixel diffusion methods lagging behind latent diffusion models. We propose PixelGen, a simple pixel diffusion framework with perceptual supervision. Instead of modeling the full image manifold, PixelGen introduces two complementary perceptual losses to guide diffusion model towards learning a more meaningful perceptual manifold. An LPIPS loss facilitates learning better local patterns, while a DINO-based perceptual loss strengthens global semantics. With perceptual supervision, PixelGen surpasses strong latent diffusion baselines. It achieves an FID of 5.11 on ImageNet-256 without classifier-free guidance using only 80 training epochs, and demonstrates favorable scaling performance on large-scale text-to-image generation with a GenEval score of 0.79. PixelGen requires no VAEs, no latent representations, and no auxiliary stages, providing a simpler yet more powerful generative paradigm. Codes are publicly available at https://github.com/Zehong-Ma/PixelGen.

Ruihan Xu, Anthony Opipari, Joshua Mah et al.

This paper introduces SO(2)-Equivariant Gaussian Sculpting Networks (GSNs) as an approach for SO(2)-Equivariant 3D object reconstruction from single-view image observations. GSNs take a single observation as input to generate a Gaussian splat representation describing the observed object's geometry and texture. By using a shared feature extractor before decoding Gaussian colors, covariances, positions, and opacities, GSNs achieve extremely high throughput (>150FPS). Experiments demonstrate that GSNs can be trained efficiently using a multi-view rendering loss and are competitive, in quality, with expensive diffusion-based reconstruction algorithms. The GSN model is validated on multiple benchmark experiments. Moreover, we demonstrate the potential for GSNs to be used within a robotic manipulation pipeline for object-centric grasping.

Ruihan Xu, Jiajin Li, Yiping Lu

A central question in modern deep learning is how to design optimizers whose behavior remains stable as the network width $w$ increases. We address this question by interpreting several widely used neural-network optimizers, including \textrm{AdamW} and \textrm{Muon}, as instances of steepest descent under matrix operator norms. This perspective links optimizer geometry with the Lipschitz structure of the network forward map, and enables width-independent control of both Lipschitz and smoothness constants. However, steepest-descent rules induced by standard $p \to q$ operator norms lack layerwise composability and therefore cannot provide width-independent bounds in deep architectures. We overcome this limitation by introducing a family of mean-normalized operator norms, denoted $\pmean \to \qmean$, that admit layerwise composability, yield width-independent smoothness bounds, and give rise to practical optimizers such as \emph{rescaled} \textrm{AdamW}, row normalization, and column normalization. The resulting learning rate width-aware scaling rules recover $μ$P scaling~\cite{yang2021tensor} as a special case and provide a principled mechanism for cross-width learning-rate transfer across a broad class of optimizers. We further show that \textrm{Muon} can suffer an $\mathcal{O}(\sqrt{w})$ worst-case growth in the smoothness constant, whereas a new family of row-normalized optimizers we propose achieves width-independent smoothness guarantees. Based on the observations, we propose MOGA (Matrix Operator Geometry Aware), a width-aware optimizer based only on row/column-wise normalization that enables stable learning-rate transfer across model widths. Large-scale pre-training on GPT-2 and LLaMA shows that MOGA, especially with row normalization, is competitive with Muon while being notably faster in large-token and low-loss regimes.

Ruihan Xu, Haokui Zhang, Yaowei Wang et al.

The growing use of deep learning necessitates efficient network design and deployment, making neural predictors vital for estimating attributes such as accuracy and latency. Recently, Graph Neural Networks (GNNs) and transformers have shown promising performance in representing neural architectures. However, each of both methods has its disadvantages. GNNs lack the capabilities to represent complicated features, while transformers face poor generalization when the depth of architecture grows. To mitigate the above issues, we rethink neural architecture topology and show that sibling nodes are pivotal while overlooked in previous research. We thus propose a novel predictor leveraging the strengths of GNNs and transformers to learn the enhanced topology. We introduce a novel token mixer that considers siblings, and a new channel mixer named bidirectional graph isomorphism feed-forward network. Our approach consistently achieves promising performance in both accuracy and latency prediction, providing valuable insights for learning Directed Acyclic Graph (DAG) topology. The code is available at https://github.com/XuRuihan/NNFormer.

Ruihan Xu, Qingpei Guo, Yao Zhu et al.

Recent works have indicated redundancy across transformer blocks, prompting the research of depth compression to prune less crucial blocks. However, current ways of entire-block pruning suffer from risks of discarding meaningful cues learned in those blocks, leading to substantial performance degradation. As another line of model compression, channel pruning can better preserve performance, while it cannot reduce model depth and is challenged by inconsistent pruning ratios for individual layers. To pursue better model compression and acceleration, this paper proposes \textbf{FlattenGPT}, a novel way to detect and reduce depth-wise redundancies. By flatting two adjacent blocks into one, it compresses the network depth, meanwhile enables more effective parameter redundancy detection and removal. FlattenGPT allows to preserve the knowledge learned in all blocks, and remains consistent with the original transformer architecture. Extensive experiments demonstrate that FlattenGPT enhances model efficiency with a decent trade-off to performance. It outperforms existing pruning methods in both zero-shot accuracies and WikiText-2 perplexity across various model types and parameter sizes. On LLaMA-2/3 and Qwen-1.5 models, FlattenGPT retains 90-96\% of zero-shot performance with a compression ratio of 20\%. It also outperforms other pruning methods in accelerating LLM inference, making it promising for enhancing the efficiency of transformers.

Joey Wilson, Ruihan Xu, Yile Sun et al.

This paper introduces a novel probabilistic mapping algorithm, LatentBKI, which enables open-vocabulary mapping with quantifiable uncertainty. Traditionally, semantic mapping algorithms focus on a fixed set of semantic categories which limits their applicability for complex robotic tasks. Vision-Language (VL) models have recently emerged as a technique to jointly model language and visual features in a latent space, enabling semantic recognition beyond a predefined, fixed set of semantic classes. LatentBKI recurrently incorporates neural embeddings from VL models into a voxel map with quantifiable uncertainty, leveraging the spatial correlations of nearby observations through Bayesian Kernel Inference (BKI). LatentBKI is evaluated against similar explicit semantic mapping and VL mapping frameworks on the popular Matterport3D and Semantic KITTI datasets, demonstrating that LatentBKI maintains the probabilistic benefits of continuous mapping with the additional benefit of open-dictionary queries. Real-world experiments demonstrate applicability to challenging indoor environments.

Ruihan Xu, Yuting Gao, Lan Wang et al.

Large Multimodal Models (LMMs) have achieved remarkable success in vision-language tasks, yet their vast parameter counts are often underutilized during both training and inference. In this work, we embrace the idea of looping back to move forward: reusing model parameters through recursive refinement to extract stronger multimodal representations without increasing model size. We propose RecursiveVLM, a recursive Transformer architecture tailored for LMMs. Two key innovations enable effective looping: (i) a Recursive Connector that aligns features across recursion steps by fusing intermediate-layer hidden states and applying modality-specific projections, respecting the distinct statistical structures of vision and language tokens; (ii) a Monotonic Recursion Loss that supervises every step and guarantees performance improves monotonically with recursion depth. This design transforms recursion into an on-demand refinement mechanism: delivering strong results with few loops on resource-constrained devices and progressively improving outputs when more computation resources are available. Experiments show consistent gains of +3% over standard Transformers and +7% over vanilla recursive baselines, demonstrating that strategic looping is a powerful path toward efficient, deployment-adaptive LMMs.

Yuting Gao, Weihao Chen, Lan Wang et al.

Preference learning has recently emerged as a pivotal strategy for post-training alignment of Multimodal Large Language Models (MLLMs). However, existing approaches predominantly rely on external human-annotated preference data, which is costly and labor-intensive to collect. In this work, we propose OrdMoE, a novel preference alignment framework that bypasses the reliance on external human preferences entirely by leveraging intrinsic signals within Mixture-of-Experts (MoE) architectures. Specifically, we observe that the router's expert selection scores implicitly encode a quality-aware ranking of responses (i.e. higher-scoring experts consistently generate higher-quality outputs). Building on this insight, OrdMoE constructs an internal preference hierarchy by grouping experts into ranked tiers based on their per-token routing scores and activating each tier separately to produce a sequence of responses with increasing quality. This yields a zero-cost, self-supervised preference ordering over generated responses, which can be directly optimized using standard preference learning objectives. Extensive experiments across multiple multimodal benchmarks demnstrate that OrdMoE significantly enhances both alignment and overall performance of multimodal Mixture-of-Experts LLMs, achieving competitive results without requiring any human-annotated preference data.

Ruihan Xu, Yiping Lu

Randomized sketching accelerates large-scale numerical linear algebra by reducing computational complexity. While the traditional sketch-and-solve approach reduces the problem size directly through sketching, the sketch-and-precondition method leverages sketching to construct a computational friendly preconditioner. This preconditioner improves the convergence speed of iterative solvers applied to the original problem, maintaining accuracy in the full space. Furthermore, the convergence rate of the solver improves at least linearly with the sketch size. Despite its potential, developing a sketch-and-precondition framework for randomized algorithms in low-rank matrix approximation remains an open challenge. We introduce the Error-Powered Sketched Inverse Iteration (EPSI) Method via run sketched Newton iteration for the Lagrange form as a sketch-and-precondition variant for randomized low-rank approximation. Our method achieves theoretical guarantees, including a convergence rate that improves at least linearly with the sketch size.