Harrie Weinans

2papers

2 Papers

LGSep 30, 2019
Multi-classifier prediction of knee osteoarthritis progression from incomplete imbalanced longitudinal data

Paweł Widera, Paco M. J. Welsing, Christoph Ladel et al.

Conventional inclusion criteria used in osteoarthritis clinical trials are not very effective in selecting patients who would benefit from a therapy being tested. Typically majority of selected patients show no or limited disease progression during a trial period. As a consequence, the effect of the tested treatment cannot be observed, and the efforts and resources invested in running the trial are not rewarded. This could be avoided, if selection criteria were more predictive of the future disease progression. In this article, we formulated the patient selection problem as a multi-class classification task, with classes based on clinically relevant measures of progression (over a time scale typical for clinical trials). Using data from two long-term knee osteoarthritis studies OAI and CHECK, we tested multiple algorithms and learning process configurations (including multi-classifier approaches, cost-sensitive learning, and feature selection), to identify the best performing machine learning models. We examined the behaviour of the best models, with respect to prediction errors and the impact of used features, to confirm their clinical relevance. We found that the model-based selection outperforms the conventional inclusion criteria, reducing by 20-25% the number of patients who show no progression. This result might lead to more efficient clinical trials.

MED-PHFeb 13, 2019
Bone Texture Analysis for Prediction of Incident Radio-graphic Hip Osteoarthritis Using Machine Learning: Data from the Cohort Hip and Cohort Knee (CHECK) study

Jukka Hirvasniemi, Willem Paul Gielis, Saeed Arbabi et al.

Our aim was to assess the ability of radiography-based bone texture parameters in proximal femur and acetabulum to predict incident radiographic hip osteoarthritis (rHOA) over a 10 years period. Pelvic radiographs from CHECK (Cohort Hip and Cohort Knee) at baseline (987 hips) were analyzed for bone texture using fractal signature analysis in proximal femur and acetabulum. Elastic net (machine learning) was used to predict the incidence of rHOA (Kellgren-Lawrence grade (KL) > 1 or total hip replacement (THR)), joint space narrowing score (JSN, range 0-3), and osteophyte score (OST, range 0-3) after 10 years. Performance of prediction models was assessed using the area under the receiver operating characteristic curve (ROC AUC). Of the 987 hips without rHOA at baseline, 435 (44%) had rHOA at 10-year follow-up. Of the 667 hips with JSN grade 0 at baseline, 471 (71%) had JSN grade > 0 at 10-year follow-up. Of the 613 hips with OST grade 0 at baseline, 526 (86%) had OST grade > 0 at 10-year follow-up. AUCs for the models including age, gender, and body mass index to predict incident rHOA, JSN, and OST were 0.59, 0.54, and 0.51, respectively. The inclusion of bone texture parameters in the models improved the prediction of incident rHOA (ROC AUC 0.66 and 0.71 when baseline KL was also included in the model) and JSN (ROC AUC 0.62), but not incident OST (ROC AUC 0.53). Bone texture analysis provides additional information for predicting incident rHOA or THR over 10 years.