Muhammed Talo

Muhammed Talo

Automated recognition and classification of bacteria species from microscopic images have significant importance in clinical microbiology. Bacteria classification is usually carried out manually by biologists using different shapes and morphologic characteristics of bacteria species. The manual taxonomy of bacteria types from microscopy images is time-consuming and a challenging task for even experienced biologists. In this study, an automated deep learning based classification approach has been proposed to classify bacterial images into different categories. The ResNet-50 pre-trained CNN architecture has been used to classify digital bacteria images into 33 categories. The transfer learning technique was employed to accelerate the training process of the network and improve the classification performance of the network. The proposed method achieved an average classification accuracy of 99.2%. The experimental results demonstrate that the proposed technique surpasses state-of-the-art methods in the literature and can be used for any type of bacteria classification tasks.

Muhammed Talo

There is a strong need for automated systems to improve diagnostic quality and reduce the analysis time in histopathology image processing. Automated detection and classification of pathological tissue characteristics with computer-aided diagnostic systems are a critical step in the early diagnosis and treatment of diseases. Once a pathology image is scanned by a microscope and loaded onto a computer, it can be used for automated detection and classification of diseases. In this study, the DenseNet-161 and ResNet-50 pre-trained CNN models have been used to classify digital histopathology patches into the corresponding whole slide images via transfer learning technique. The proposed pre-trained models were tested on grayscale and color histopathology images. The DenseNet-161 pre-trained model achieved a classification accuracy of 97.89% using grayscale images and the ResNet-50 model obtained the accuracy of 98.87% for color images. The proposed pre-trained models outperform state-of-the-art methods in all performance metrics to classify digital pathology patches into 24 categories.