Md. Habibur Rahman Sifat

Md. Habibur Rahman Sifat, Chowdhury Rafeed Rahman, Mohammad Rafsan et al.

While writing Bengali using English keyboard, users often make spelling mistakes. The accuracy of any Bengali spell checker or paragraph correction module largely depends on the kind of error dataset it is based on. Manual generation of such error dataset is a cumbersome process. In this research, We present an algorithm for automatic misspelled Bengali word generation from correct word through analyzing Bengali writing pattern using QWERTY layout English keyboard. As part of our analysis, we have formed a list of most commonly used Bengali words, phonetically similar replaceable clusters, frequently mispressed replaceable clusters, frequently mispressed insertion prone clusters and some rules for Juktakkhar (constant letter clusters) handling while generating errors.

Ruhul Amin, Chowdhury Rafeed Rahman, Md. Habibur Rahman Sifat et al.

Promoter is a short region of DNA which is responsible for initiating transcription of specific genes. Development of computational tools for automatic identification of promoters is in high demand. According to the difference of functions, promoters can be of different types. Promoters may have both intra and inter class variation and similarity in terms of consensus sequences. Accurate classification of various types of sigma promoters still remains a challenge. We present iPromoter-BnCNN for identification and accurate classification of six types of promoters - sigma24, sigma28, sigma32, sigma38, sigma54, sigma70. It is a Convolutional Neural Network (CNN) based classifier which combines local features related to monomer nucleotide sequence, trimer nucleotide sequence, dimer structural properties and trimer structural properties through the use of parallel branching. We conducted experiments on a benchmark dataset and compared with two state-of-the-art tools to show our supremacy on 5-fold cross-validation. Moreover, we tested our classifier on an independent test dataset. Our proposed tool iPromoter-BnCNN web server is freely available at http://103.109.52.8/iPromoter-BnCNN. The runnable source code can be found at https://colab.research.google.com/drive/1yWWh7BXhsm8U4PODgPqlQRy23QGjF2DZ.