Hengguan Huang

Xing Shen, Hengguan Huang, Brennan Nichyporuk et al.

Once deployed, medical image analysis methods are often faced with unexpected image corruptions and noise perturbations. These unknown covariate shifts present significant challenges to deep learning based methods trained on "clean" images. This often results in unreliable predictions and poorly calibrated confidence, hence hindering clinical applicability. While recent methods have been developed to address specific issues such as confidence calibration or adversarial robustness, no single framework effectively tackles all these challenges simultaneously. To bridge this gap, we propose LaDiNE, a novel ensemble learning method combining the robustness of Vision Transformers with diffusion-based generative models for improved reliability in medical image classification. Specifically, transformer encoder blocks are used as hierarchical feature extractors that learn invariant features from images for each ensemble member, resulting in features that are robust to input perturbations. In addition, diffusion models are used as flexible density estimators to estimate member densities conditioned on the invariant features, leading to improved modeling of complex data distributions while retaining properly calibrated confidence. Extensive experiments on tuberculosis chest X-rays and melanoma skin cancer datasets demonstrate that LaDiNE achieves superior performance compared to a wide range of state-of-the-art methods by simultaneously improving prediction accuracy and confidence calibration under unseen noise, adversarial perturbations, and resolution degradation.

Yang Song, Yixuan Zhang, Lingfa Meng et al.

Parameter-efficient adaptation has made LLMs practical for domain prediction, but standard LoRA still relies on a static low-rank update and does not expose the latent interactions that often drive scientific labels. We introduce iLoRA. To our knowledge, it is the first Bayesian graph-conditioned LoRA framework. It infers a latent interaction graph from the input and uses it to generate input-conditioned LoRA updates. As a result, iLoRA learns prediction and latent interaction structure jointly, rather than training a predictor and applying interaction analysis only post hoc. We instantiate this idea for microbiome diagnosis, where disease state can depend on both species-level abundance and microbe-microbe cross-talk, and evaluate it in two complementary settings: interactive QA with human-annotated graphs, which tests latent structure recovery, and multi-cohort IBD diagnosis, which tests biomedical utility. Across both settings, iLoRA improves over strong LoRA and Bayesian adaptation baselines, recovers graphs aligned with human annotations and cohort-level microbiome associations, and provides calibrated uncertainty with moderate graph-branch overhead.

Hongfu Liu, Hengguan Huang, Ye Wang

Acoustic foundation models, fine-tuned for Automatic Speech Recognition (ASR), suffer from performance degradation in wild acoustic test settings when deployed in real-world scenarios. Stabilizing online Test-Time Adaptation (TTA) under these conditions remains an open and unexplored question. Existing wild vision TTA methods often fail to handle speech data effectively due to the unique characteristics of high-entropy speech frames, which are unreliably filtered out even when containing crucial semantic content. Furthermore, unlike static vision data, speech signals follow short-term consistency, requiring specialized adaptation strategies. In this work, we propose a novel wild acoustic TTA method tailored for ASR fine-tuned acoustic foundation models. Our method, Confidence-Enhanced Adaptation, performs frame-level adaptation using a confidence-aware weight scheme to avoid filtering out essential information in high-entropy frames. Additionally, we apply consistency regularization during test-time optimization to leverage the inherent short-term consistency of speech signals. Our experiments on both synthetic and real-world datasets demonstrate that our approach outperforms existing baselines under various wild acoustic test settings, including Gaussian noise, environmental sounds, accent variations, and sung speech.

Yang Xu, Yi Wang, Hengguan Huang et al.

Understanding training dynamics and feature evolution is crucial for the mechanistic interpretability of large language models (LLMs). Although sparse autoencoders (SAEs) have been used to identify features within LLMs, a clear picture of how these features evolve during training remains elusive. In this study, we (1) introduce SAE-Track, a novel method for efficiently obtaining a continual series of SAEs, providing the foundation for a mechanistic study that covers (2) the semantic evolution of features, (3) the underlying processes of feature formation, and (4) the directional drift of feature vectors. Our work provides new insights into the dynamics of features in LLMs, enhancing our understanding of training mechanisms and feature evolution. For reproducibility, our code is available at https://github.com/Superposition09m/SAE-Track.

Hengguan Huang, Songtao Wang, Hongfu Liu et al.

Traditional applications of natural language processing (NLP) in healthcare have predominantly focused on patient-centered services, enhancing patient interactions and care delivery, such as through medical dialogue systems. However, the potential of NLP to benefit inexperienced doctors, particularly in areas such as communicative medical coaching, remains largely unexplored. We introduce "ChatCoach", a human-AI cooperative framework designed to assist medical learners in practicing their communication skills during patient consultations. ChatCoach (Our data and code are available online: https://github.com/zerowst/Chatcoach)differentiates itself from conventional dialogue systems by offering a simulated environment where medical learners can practice dialogues with a patient agent, while a coach agent provides immediate, structured feedback. This is facilitated by our proposed Generalized Chain-of-Thought (GCoT) approach, which fosters the generation of structured feedback and enhances the utilization of external knowledge sources. Additionally, we have developed a dataset specifically for evaluating Large Language Models (LLMs) within the ChatCoach framework on communicative medical coaching tasks. Our empirical results validate the effectiveness of ChatCoach.

Guang-Yuan Hao, Hengguan Huang, Haotian Wang et al.

Active learning (AL) aims to improve model performance within a fixed labeling budget by choosing the most informative data points to label. Existing AL focuses on the single-domain setting, where all data come from the same domain (e.g., the same dataset). However, many real-world tasks often involve multiple domains. For example, in visual recognition, it is often desirable to train an image classifier that works across different environments (e.g., different backgrounds), where images from each environment constitute one domain. Such a multi-domain AL setting is challenging for prior methods because they (1) ignore the similarity among different domains when assigning labeling budget and (2) fail to handle distribution shift of data across different domains. In this paper, we propose the first general method, dubbed composite active learning (CAL), for multi-domain AL. Our approach explicitly considers the domain-level and instance-level information in the problem; CAL first assigns domain-level budgets according to domain-level importance, which is estimated by optimizing an upper error bound that we develop; with the domain-level budgets, CAL then leverages a certain instance-level query strategy to select samples to label from each domain. Our theoretical analysis shows that our method achieves a better error bound compared to current AL methods. Our empirical results demonstrate that our approach significantly outperforms the state-of-the-art AL methods on both synthetic and real-world multi-domain datasets. Code is available at https://github.com/Wang-ML-Lab/multi-domain-active-learning.

Xing Shen, Justin Szeto, Mingyang Li et al.

Multimodal large language models (MLLMs) have enormous potential to perform few-shot in-context learning in the context of medical image analysis. However, safe deployment of these models into real-world clinical practice requires an in-depth analysis of the accuracies of their predictions, and their associated calibration errors, particularly across different demographic subgroups. In this work, we present the first investigation into the calibration biases and demographic unfairness of MLLMs' predictions and confidence scores in few-shot in-context learning for medical image classification. We introduce CALIN, an inference-time calibration method designed to mitigate the associated biases. Specifically, CALIN estimates the amount of calibration needed, represented by calibration matrices, using a bi-level procedure: progressing from the population level to the subgroup level prior to inference. It then applies this estimation to calibrate the predicted confidence scores during inference. Experimental results on three medical imaging datasets: PAPILA for fundus image classification, HAM10000 for skin cancer classification, and MIMIC-CXR for chest X-ray classification demonstrate CALIN's effectiveness at ensuring fair confidence calibration in its prediction, while improving its overall prediction accuracies and exhibiting minimum fairness-utility trade-off. Our codebase can be found at https://github.com/xingbpshen/medical-calibration-fairness-mllm.

Hongfu Liu, Hengguan Huang, Xiangming Gu et al.

Large language models (LLMs) pose significant risks due to the potential for generating harmful content or users attempting to evade guardrails. Existing studies have developed LLM-based guard models designed to moderate the input and output of threat LLMs, ensuring adherence to safety policies by blocking content that violates these protocols upon deployment. However, limited attention has been given to the reliability and calibration of such guard models. In this work, we empirically conduct comprehensive investigations of confidence calibration for 9 existing LLM-based guard models on 12 benchmarks in both user input and model output classification. Our findings reveal that current LLM-based guard models tend to 1) produce overconfident predictions, 2) exhibit significant miscalibration when subjected to jailbreak attacks, and 3) demonstrate limited robustness to the outputs generated by different types of response models. Additionally, we assess the effectiveness of post-hoc calibration methods to mitigate miscalibration. We demonstrate the efficacy of temperature scaling and, for the first time, highlight the benefits of contextual calibration for confidence calibration of guard models, particularly in the absence of validation sets. Our analysis and experiments underscore the limitations of current LLM-based guard models and provide valuable insights for the future development of well-calibrated guard models toward more reliable content moderation. We also advocate for incorporating reliability evaluation of confidence calibration when releasing future LLM-based guard models.

Hairong Chen, Yicheng Feng, Ziyu Jia et al.

Alzheimer's disease (AD) alters brain electrophysiology and disrupts multichannel EEG dynamics, making accurate and clinically useful EEG-based diagnosis increasingly important for screening and disease monitoring. However, many existing approaches rely on black-box classifiers and do not explicitly model the underlying dynamics that generate observed signals. To address these limitations, we propose LERD, an end-to-end Bayesian electrophysiological neural dynamical system that infers latent neural events and their relational structure directly from multichannel EEG without event or interaction annotations. LERD combines a continuous-time event inference module with a stochastic event-generation process to capture flexible temporal patterns, while incorporating an electrophysiology-inspired dynamical prior to guide learning in a principled way. We further provide theoretical analysis that yields a tractable bound for training and stability guarantees for the inferred relational dynamics. Extensive experiments on synthetic benchmarks and two real-world AD EEG cohorts demonstrate that LERD consistently outperforms strong baselines and yields physiology-aligned latent summaries that help characterize group-level dynamical differences.

Hengguan Huang, Xing Shen, Songtao Wang et al.

Human cognition excels at transcending sensory input and forming latent representations that structure our understanding of the world. While Large Language Model (LLM) agents demonstrate emergent reasoning and decision-making abilities, they lack a principled framework for capturing latent structures and modeling uncertainty. In this work, we explore for the first time how to bridge LLM agents with probabilistic graphical models (PGMs) to address agentic reasoning under uncertainty. To this end, we introduce Verbalized Probabilistic Graphical Modeling (vPGM), a Bayesian agentic framework that (i) guides LLM agents in following key principles of PGMs through natural language and (ii) refines the resulting posterior distributions via numerical Bayesian inference. Unlike many traditional probabilistic methods requiring substantial domain expertise, vPGM bypasses expert-driven model design, making it well-suited for scenarios with limited assumptions. We evaluated our model on several agentic reasoning tasks, both close-ended and open-ended. Our results indicate that the model effectively enhances confidence calibration and text generation quality.

Hengguan Huang, Hongfu Liu, Hao Wang et al.

Perception of time from sequentially acquired sensory inputs is rooted in everyday behaviors of individual organisms. Yet, most algorithms for time-series modeling fail to learn dynamics of random event timings directly from visual or audio inputs, requiring timing annotations during training that are usually unavailable for real-world applications. For instance, neuroscience perspectives on postdiction imply that there exist variable temporal ranges within which the incoming sensory inputs can affect the earlier perception, but such temporal ranges are mostly unannotated for real applications such as automatic speech recognition (ASR). In this paper, we present a probabilistic ordinary differential equation (ODE), called STochastic boundaRy ODE (STRODE), that learns both the timings and the dynamics of time series data without requiring any timing annotations during training. STRODE allows the usage of differential equations to sample from the posterior point processes, efficiently and analytically. We further provide theoretical guarantees on the learning of STRODE. Our empirical results show that our approach successfully infers event timings of time series data. Our method achieves competitive or superior performances compared to existing state-of-the-art methods for both synthetic and real-world datasets.

Hengguan Huang, Fuzhao Xue, Hao Wang et al.

Lying at the core of human intelligence, relational thinking is characterized by initially relying on innumerable unconscious percepts pertaining to relations between new sensory signals and prior knowledge, consequently becoming a recognizable concept or object through coupling and transformation of these percepts. Such mental processes are difficult to model in real-world problems such as in conversational automatic speech recognition (ASR), as the percepts (if they are modelled as graphs indicating relationships among utterances) are supposed to be innumerable and not directly observable. In this paper, we present a Bayesian nonparametric deep learning method called deep graph random process (DGP) that can generate an infinite number of probabilistic graphs representing percepts. We further provide a closed-form solution for coupling and transformation of these percept graphs for acoustic modeling. Our approach is able to successfully infer relations among utterances without using any relational data during training. Experimental evaluations on ASR tasks including CHiME-2 and CHiME-5 demonstrate the effectiveness and benefits of our method.