Shouvon Sarker

Shouvon Sarker, Lijun Qian, Xishuang Dong

The identification of key factors such as medications, diseases, and relationships within electronic health records and clinical notes has a wide range of applications in the clinical field. In the N2C2 2022 competitions, various tasks were presented to promote the identification of key factors in electronic health records (EHRs) using the Contextualized Medication Event Dataset (CMED). Pretrained large language models (LLMs) demonstrated exceptional performance in these tasks. This study aims to explore the utilization of LLMs, specifically ChatGPT, for data augmentation to overcome the limited availability of annotated data for identifying the key factors in EHRs. Additionally, different pre-trained BERT models, initially trained on extensive datasets like Wikipedia and MIMIC, were employed to develop models for identifying these key variables in EHRs through fine-tuning on augmented datasets. The experimental results of two EHR analysis tasks, namely medication identification and medication event classification, indicate that data augmentation based on ChatGPT proves beneficial in improving performance for both medication identification and medication event classification.

Ming Kuo, Shouvon Sarker, Lijun Qian et al.

In contrast to pedagogies like evidence-based teaching, personalized adaptive learning (PAL) distinguishes itself by closely monitoring the progress of individual students and tailoring the learning path to their unique knowledge and requirements. A crucial technique for effective PAL implementation is knowledge tracing, which models students' evolving knowledge to predict their future performance. Based on these predictions, personalized recommendations for resources and learning paths can be made to meet individual needs. Recent advancements in deep learning have successfully enhanced knowledge tracking through Deep Knowledge Tracing (DKT). This paper introduces generative AI models to further enhance DKT. Generative AI models, rooted in deep learning, are trained to generate synthetic data, addressing data scarcity challenges in various applications across fields such as natural language processing (NLP) and computer vision (CV). This study aims to tackle data shortage issues in student learning records to enhance DKT performance for PAL. Specifically, it employs TabDDPM, a diffusion model, to generate synthetic educational records to augment training data for enhancing DKT. The proposed method's effectiveness is validated through extensive experiments on ASSISTments datasets. The experimental results demonstrate that the AI-generated data by TabDDPM significantly improves DKT performance, particularly in scenarios with small data for training and large data for testing.

Shouvon Sarker, Xishuang Dong, Lijun Qian

Identification of key variables such as medications, diseases, relations from health records and clinical notes has a wide range of applications in the clinical domain. n2c2 2022 provided shared tasks on challenges in natural language processing for clinical data analytics on electronic health records (EHR), where it built a comprehensive annotated clinical data Contextualized Medication Event Dataset (CMED). This study focuses on subtask 2 in Track 1 of this challenge that is to detect and classify medication events from clinical notes through building a novel BERT-based ensemble model. It started with pretraining BERT models on different types of big data such as Wikipedia and MIMIC. Afterwards, these pretrained BERT models were fine-tuned on CMED training data. These fine-tuned BERT models were employed to accomplish medication event classification on CMED testing data with multiple predictions. These multiple predictions generated by these fine-tuned BERT models were integrated to build final prediction with voting strategies. Experimental results demonstrated that BERT-based ensemble models can effectively improve strict Micro-F score by about 5% and strict Macro-F score by about 6%, respectively.