Mathieu Lemay

Pierre Louis Gaudilliere, Halla Sigurthorsdottir, Clémentine Aguet et al.

ECG heartbeat classification plays a vital role in diagnosis of cardiac arrhythmia. The goal of the Physionet/CinC 2021 challenge was to accurately classify clinical diagnosis based on 12, 6, 4, 3 or 2-lead ECG recordings in order to aid doctors in the diagnoses of different heart conditions. Transformers have had great success in the field of natural language processing in the past years. Our team, CinCSEM, proposes to draw the parallel between text and periodic time series signals by viewing the repeated period as words and the whole signal as a sequence of such words. In this way, the attention mechanisms of the transformers can be applied to periodic time series signals. In our implementation, we follow the Transformer Encoder architecture, which combines several encoder layers followed by a dense layer with linear or sigmoid activation for generative pre-training or classification, respectively. The use case presented here is multi-label classification of heartbeat abnormalities of ECG recordings shared by the challenge. Our best entry, not exceeding the challenge's hardware limitations, achieved a score of 0.12, 0.07, 0.10, 0.10 and 0.07 on 12-lead, 6-lead, 4-lead, 3-lead and 2-lead test set respectively. Unfortunately, our team was unable to be ranked because of a missing pre-print.

Halla Sigurthorsdottir, Jérôme Van Zaen, Ricard Delgado-Gonzalo et al.

We developed a convolutional recurrent neural network to classify 12-lead ECG signals for the challenge of PhysioNet/ Computing in Cardiology 2020 as team Pink Irish Hat. The model combines convolutional and recurrent layers, takes sliding windows of ECG signals as input and yields the probability of each class as output. The convolutional part extracts features from each sliding window. The bi-directional gated recurrent unit (GRU) layer and an attention layer aggregate these features from all windows into a single feature vector. Finally, a dense layer outputs class probabilities. The final decision is made using test time augmentation (TTA) and an optimized decision threshold. Several hyperparameters of our architecture were optimized, the most important of which turned out to be the choice of optimizer and the number of filters per convolutional layer. Our network achieved a challenge score of 0.511 on the hidden validation set and 0.167 on the full hidden test set, ranking us 23rd out of 41 in the official ranking.

Carlos Segarra, Enric Muntané, Mathieu Lemay et al.

Medical data belongs to whom it produces it. In an increasing manner, this data is usually processed in unauthorized third-party clouds that should never have the opportunity to access it. Moreover, recent data protection regulations (e.g., GDPR) pave the way towards the development of privacy-preserving processing techniques. In this paper, we present a proof of concept of a streaming IoT architecture that securely processes cardiac data in the cloud combining trusted hardware and Spark. The additional security guarantees come with no changes to the application's code in the server. We tested the system with a database containing ECGs from wearable devices comprised of 8 healthy males performing a standarized range of in-lab physisical activities (e.g., run, walk, bike). We show that, when compared with standard Spark Streaming, the addition of privacy comes at the cost of doubling the execution time.

Jérôme Van Zaen, Olivier Chételat, Mathieu Lemay et al.

While most heart arrhythmias are not immediately harmful, they can lead to severe complications. In particular, atrial fibrillation, the most common arrhythmia, is characterized by fast and irregular heart beats and increases the risk of suffering a stroke. To detect such abnormal heart conditions, we propose a system composed of two main parts: a smart vest with two cooperative sensors to collect ECG data and a neural network architecture to classify heart rhythms. The smart vest uses two dry bi-electrodes to record a single lead ECG signal. The biopotential signal is then streamed via a gateway to the cloud where a neural network detects and classifies the heart arrhythmias. We selected an architecture that combines convolutional and recurrent layers. The convolutional layers extract relevant features from sliding windows of ECG and the recurrent layer aggregates them for a final softmax layer that performs the classification. Our neural network achieves an accuracy of 87.50% on the dataset of the challenge of Computing in Cardiology 2017.

Carlos Segarra, Ricard Delgado-Gonzalo, Mathieu Lemay et al.

Processing sensitive data, such as those produced by body sensors, on third-party untrusted clouds is particularly challenging without compromising the privacy of the users generating it. Typically, these sensors generate large quantities of continuous data in a streaming fashion. Such vast amount of data must be processed efficiently and securely, even under strong adversarial models. The recent introduction in the mass-market of consumer-grade processors with Trusted Execution Environments (TEEs), such as Intel SGX, paves the way to implement solutions that overcome less flexible approaches, such as those atop homomorphic encryption. We present a secure streaming processing system built on top of Intel SGX to showcase the viability of this approach with a system specifically fitted for medical data. We design and fully implement a prototype system that we evaluate with several realistic datasets. Our experimental results show that the proposed system achieves modest overhead compared to vanilla Spark while offering additional protection guarantees under powerful attackers and threat models.