Zequn Sun

Xingyu Chen, Yuanning Cui, Zequn Sun et al.

Entity alignment (EA) aims to identify equivalent entities across heterogeneous knowledge graphs (KGs) and is a key component of knowledge fusion and cross-KG reasoning. The recent EA foundation model demonstrates that alignment knowledge, once pretrained, can be directly applied to diverse previously unseen KG pairs. However, it still underuses structural context in two places: cross-KG interaction is weak during encoding, and final candidate ranking still relies too heavily on coarse similarity. We address these limitations with ContextEA, an enhanced encoder-decoder framework for transferable EA. On the encoder side, we introduce a cross-KG interaction encoder that unifies the two KGs with anchor bridges and performs earlier relation-aware cross-graph propagation. On the decoder side, we introduce a structural calibration decoder that calibrates alignment scores with entity-level, neighborhood-level, relation-level, and anchor-aware structural evidence. This design strengthens both structural context construction and structural context exploitation while remaining lightweight. Experiments on 29 EA datasets in OpenEA, SRPRS, and DBP show consistent gains over strong transferable baselines. Notably, the pretrained ContextEA already surpasses the finetuned baselines on all three benchmark groups, demonstrating substantially stronger transfer to unseen KGs. These results suggest that explicitly harnessing structural context is an effective direction for improving EA foundation models.

Yiqi Wang, Jiaqi Zhang, Taotao Cai et al.

Large language model (LLM)-based agents increasingly solve complex tasks by interacting with external tools, retrieval systems, memory modules, environments, and other agents. These capabilities expand agent autonomy, but also make agent behavior harder to verify, debug, and audit. Final-answer accuracy alone cannot explain how an output was produced, which evidence supported each claim, whether tool calls were justified, how memory influenced later decisions, or where execution failures originated. Evidence tracing and execution provenance address this gap by modeling how retrieved evidence, tool outputs, memory items, environment observations, intermediate claims, actions, and final answers are connected throughout agent execution. This survey provides a systematic review and conceptual framework for evidence tracing and execution provenance in LLM agents. We organize related work around a unified provenance perspective that connects retrieval grounding, claim support, tool-use safety, memory lineage, observability, debugging, audit, and recovery. We introduce a taxonomy covering trace sources, evidence and execution units, provenance relations, tracing granularity and timing, representation forms, and trust functions. We review key methodological directions, including provenance representation, evidence attribution, tool-use provenance, runtime guardrails, provenance-bearing memory, trace-based observability, and failure diagnosis. We also map existing benchmarks, datasets, and evaluation metrics to provenance-related capabilities, and discuss how evaluation can move from final-answer correctness toward process-level accountability. Finally, we outline open challenges, including unified trace schemas, claim-level and semantic provenance, provenance-aware safety mechanisms, realistic execution-trace benchmarks, recovery-oriented evaluation, and privacy-aware audit infrastructure.

Xindi Luo, Zequn Sun, Wei Hu

This paper presents $μ\text{KG}$, an open-source Python library for representation learning over knowledge graphs. $μ\text{KG}$ supports joint representation learning over multi-source knowledge graphs (and also a single knowledge graph), multiple deep learning libraries (PyTorch and TensorFlow2), multiple embedding tasks (link prediction, entity alignment, entity typing, and multi-source link prediction), and multiple parallel computing modes (multi-process and multi-GPU computing). It currently implements 26 popular knowledge graph embedding models and supports 16 benchmark datasets. $μ\text{KG}$ provides advanced implementations of embedding techniques with simplified pipelines of different tasks. It also comes with high-quality documentation for ease of use. $μ\text{KG}$ is more comprehensive than existing knowledge graph embedding libraries. It is useful for a thorough comparison and analysis of various embedding models and tasks. We show that the jointly learned embeddings can greatly help knowledge-powered downstream tasks, such as multi-hop knowledge graph question answering. We will stay abreast of the latest developments in the related fields and incorporate them into $μ\text{KG}$.

Kexuan Xin, Zequn Sun, Wen Hua et al.

Entity alignment is to find identical entities in different knowledge graphs. Although embedding-based entity alignment has recently achieved remarkable progress, training data insufficiency remains a critical challenge. Conventional semi-supervised methods also suffer from the incorrect entity alignment in newly proposed training data. To resolve these issues, we design an iterative cycle-teaching framework for semi-supervised entity alignment. The key idea is to train multiple entity alignment models (called aligners) simultaneously and let each aligner iteratively teach its successor the proposed new entity alignment. We propose a diversity-aware alignment selection method to choose reliable entity alignment for each aligner. We also design a conflict resolution mechanism to resolve the alignment conflict when combining the new alignment of an aligner and that from its teacher. Besides, considering the influence of cycle-teaching order, we elaborately design a strategy to arrange the optimal order that can maximize the overall performance of multiple aligners. The cycle-teaching process can break the limitations of each model's learning capability and reduce the noise in new training data, leading to improved performance. Extensive experiments on benchmark datasets demonstrate the effectiveness of the proposed cycle-teaching framework, which significantly outperforms the state-of-the-art models when the training data is insufficient and the new entity alignment has much noise.

Yuanning Cui, Yuxin Wang, Zequn Sun et al.

Existing knowledge graph (KG) embedding models have primarily focused on static KGs. However, real-world KGs do not remain static, but rather evolve and grow in tandem with the development of KG applications. Consequently, new facts and previously unseen entities and relations continually emerge, necessitating an embedding model that can quickly learn and transfer new knowledge through growth. Motivated by this, we delve into an expanding field of KG embedding in this paper, i.e., lifelong KG embedding. We consider knowledge transfer and retention of the learning on growing snapshots of a KG without having to learn embeddings from scratch. The proposed model includes a masked KG autoencoder for embedding learning and update, with an embedding transfer strategy to inject the learned knowledge into the new entity and relation embeddings, and an embedding regularization method to avoid catastrophic forgetting. To investigate the impacts of different aspects of KG growth, we construct four datasets to evaluate the performance of lifelong KG embedding. Experimental results show that the proposed model outperforms the state-of-the-art inductive and lifelong embedding baselines.

Juncheng Liu, Zequn Sun, Bryan Hooi et al.

We study dangling-aware entity alignment in knowledge graphs (KGs), which is an underexplored but important problem. As different KGs are naturally constructed by different sets of entities, a KG commonly contains some dangling entities that cannot find counterparts in other KGs. Therefore, dangling-aware entity alignment is more realistic than the conventional entity alignment where prior studies simply ignore dangling entities. We propose a framework using mixed high-order proximities on dangling-aware entity alignment. Our framework utilizes both the local high-order proximity in a nearest neighbor subgraph and the global high-order proximity in an embedding space for both dangling detection and entity alignment. Extensive experiments with two evaluation settings shows that our framework more precisely detects dangling entities, and better aligns matchable entities. Further investigations demonstrate that our framework can mitigate the hubness problem on dangling-aware entity alignment.

Kexuan Xin, Zequn Sun, Wen Hua et al.

Entity alignment is a crucial task in knowledge graph fusion. However, most entity alignment approaches have the scalability problem. Recent methods address this issue by dividing large KGs into small blocks for embedding and alignment learning in each. However, such a partitioning and learning process results in an excessive loss of structure and alignment. Therefore, in this work, we propose a scalable GNN-based entity alignment approach to reduce the structure and alignment loss from three perspectives. First, we propose a centrality-based subgraph generation algorithm to recall some landmark entities serving as the bridges between different subgraphs. Second, we introduce self-supervised entity reconstruction to recover entity representations from incomplete neighborhood subgraphs, and design cross-subgraph negative sampling to incorporate entities from other subgraphs in alignment learning. Third, during the inference process, we merge the embeddings of subgraphs to make a single space for alignment search. Experimental results on the benchmark OpenEA dataset and the proposed large DBpedia1M dataset verify the effectiveness of our approach.

Yuanning Cui, Yuxin Wang, Zequn Sun et al.

Over the years, reasoning over knowledge graphs (KGs), which aims to infer new conclusions from known facts, has mostly focused on static KGs. The unceasing growth of knowledge in real life raises the necessity to enable the inductive reasoning ability on expanding KGs. Existing inductive work assumes that new entities all emerge once in a batch, which oversimplifies the real scenario that new entities continually appear. This study dives into a more realistic and challenging setting where new entities emerge in multiple batches. We propose a walk-based inductive reasoning model to tackle the new setting. Specifically, a graph convolutional network with adaptive relation aggregation is designed to encode and update entities using their neighboring relations. To capture the varying neighbor importance, we employ a query-aware feedback attention mechanism during the aggregation. Furthermore, to alleviate the sparse link problem of new entities, we propose a link augmentation strategy to add trustworthy facts into KGs. We construct three new datasets for simulating this multi-batch emergence scenario. The experimental results show that our proposed model outperforms state-of-the-art embedding-based, walk-based and rule-based models on inductive KG reasoning.

Jiacheng Huang, Zequn Sun, Qijin Chen et al.

Knowledge graphs (KGs) store rich facts about the real world. In this paper, we study KG alignment, which aims to find alignment between not only entities but also relations and classes in different KGs. Alignment at the entity level can cross-fertilize alignment at the schema level. We propose a new KG alignment approach, called DAAKG, based on deep learning and active learning. With deep learning, it learns the embeddings of entities, relations and classes, and jointly aligns them in a semi-supervised manner. With active learning, it estimates how likely an entity, relation or class pair can be inferred, and selects the best batch for human labeling. We design two approximation algorithms for efficient solution to batch selection. Our experiments on benchmark datasets show the superior accuracy and generalization of DAAKG and validate the effectiveness of all its modules.

Yuxin Wang, Yuanning Cui, Wenqiang Liu et al.

Entity alignment is a basic and vital technique in knowledge graph (KG) integration. Over the years, research on entity alignment has resided on the assumption that KGs are static, which neglects the nature of growth of real-world KGs. As KGs grow, previous alignment results face the need to be revisited while new entity alignment waits to be discovered. In this paper, we propose and dive into a realistic yet unexplored setting, referred to as continual entity alignment. To avoid retraining an entire model on the whole KGs whenever new entities and triples come, we present a continual alignment method for this task. It reconstructs an entity's representation based on entity adjacency, enabling it to generate embeddings for new entities quickly and inductively using their existing neighbors. It selects and replays partial pre-aligned entity pairs to train only parts of KGs while extracting trustworthy alignment for knowledge augmentation. As growing KGs inevitably contain non-matchable entities, different from previous works, the proposed method employs bidirectional nearest neighbor matching to find new entity alignment and update old alignment. Furthermore, we also construct new datasets by simulating the growth of multilingual DBpedia. Extensive experiments demonstrate that our continual alignment method is more effective than baselines based on retraining or inductive learning.

Zequn Sun, Jiacheng Huang, Jinghao Lin et al.

In this paper, we present the ``joint pre-training and local re-training'' framework for learning and applying multi-source knowledge graph (KG) embeddings. We are motivated by the fact that different KGs contain complementary information to improve KG embeddings and downstream tasks. We pre-train a large teacher KG embedding model over linked multi-source KGs and distill knowledge to train a student model for a task-specific KG. To enable knowledge transfer across different KGs, we use entity alignment to build a linked subgraph for connecting the pre-trained KGs and the target KG. The linked subgraph is re-trained for three-level knowledge distillation from the teacher to the student, i.e., feature knowledge distillation, network knowledge distillation, and prediction knowledge distillation, to generate more expressive embeddings. The teacher model can be reused for different target KGs and tasks without having to train from scratch. We conduct extensive experiments to demonstrate the effectiveness and efficiency of our framework.

Zequn Sun, Jiacheng Huang, Xiaozhou Xu et al.

Joint representation learning over multi-sourced knowledge graphs (KGs) yields transferable and expressive embeddings that improve downstream tasks. Entity alignment (EA) is a critical step in this process. Despite recent considerable research progress in embedding-based EA, how it works remains to be explored. In this paper, we provide a similarity flooding perspective to explain existing translation-based and aggregation-based EA models. We prove that the embedding learning process of these models actually seeks a fixpoint of pairwise similarities between entities. We also provide experimental evidence to support our theoretical analysis. We propose two simple but effective methods inspired by the fixpoint computation in similarity flooding, and demonstrate their effectiveness on benchmark datasets. Our work bridges the gap between recent embedding-based models and the conventional similarity flooding algorithm. It would improve our understanding of and increase our faith in embedding-based EA.

Yang Liu, Zequn Sun, Guangyao Li et al.

Knowledge graph (KG) embedding seeks to learn vector representations for entities and relations. Conventional models reason over graph structures, but they suffer from the issues of graph incompleteness and long-tail entities. Recent studies have used pre-trained language models to learn embeddings based on the textual information of entities and relations, but they cannot take advantage of graph structures. In the paper, we show empirically that these two kinds of features are complementary for KG embedding. To this end, we propose CoLE, a Co-distillation Learning method for KG Embedding that exploits the complementarity of graph structures and text information. Its graph embedding model employs Transformer to reconstruct the representation of an entity from its neighborhood subgraph. Its text embedding model uses a pre-trained language model to generate entity representations from the soft prompts of their names, descriptions, and relational neighbors. To let the two model promote each other, we propose co-distillation learning that allows them to distill selective knowledge from each other's prediction logits. In our co-distillation learning, each model serves as both a teacher and a student. Experiments on benchmark datasets demonstrate that the two models outperform their related baselines, and the ensemble method CoLE with co-distillation learning advances the state-of-the-art of KG embedding.

Xiaobin Tian, Zequn Sun, Guangyao Li et al.

Entity alignment is to find identical entities in different knowledge graphs (KGs) that refer to the same real-world object. Embedding-based entity alignment techniques have been drawing a lot of attention recently because they can help solve the issue of symbolic heterogeneity in different KGs. However, in this paper, we show that the progress made in the past was due to biased and unchallenging evaluation. We highlight two major flaws in existing datasets that favor embedding-based entity alignment techniques, i.e., the isomorphic graph structures in relation triples and the weak heterogeneity in attribute triples. Towards a critical evaluation of embedding-based entity alignment methods, we construct a new dataset with heterogeneous relations and attributes based on event-centric KGs. We conduct extensive experiments to evaluate existing popular methods, and find that they fail to achieve promising performance. As a new approach to this difficult problem, we propose a time-aware literal encoder for entity alignment. The dataset and source code are publicly available to foster future research. Our work calls for more effective and practical embedding-based solutions to entity alignment.

Yang Liu, Xiaobin Tian, Zequn Sun et al.

Traditional knowledge graph (KG) completion models learn embeddings to predict missing facts. Recent works attempt to complete KGs in a text-generation manner with large language models (LLMs). However, they need to ground the output of LLMs to KG entities, which inevitably brings errors. In this paper, we present a finetuning framework, DIFT, aiming to unleash the KG completion ability of LLMs and avoid grounding errors. Given an incomplete fact, DIFT employs a lightweight model to obtain candidate entities and finetunes an LLM with discrimination instructions to select the correct one from the given candidates. To improve performance while reducing instruction data, DIFT uses a truncated sampling method to select useful facts for finetuning and injects KG embeddings into the LLM. Extensive experiments on benchmark datasets demonstrate the effectiveness of our proposed framework.

Yuanning Cui, Zequn Sun, Wei Hu

Extensive knowledge graphs (KGs) have been constructed to facilitate knowledge-driven tasks across various scenarios. However, existing work usually develops separate reasoning models for different KGs, lacking the ability to generalize and transfer knowledge across diverse KGs and reasoning settings. In this paper, we propose a prompt-based KG foundation model via in-context learning, namely KG-ICL, to achieve a universal reasoning ability. Specifically, we introduce a prompt graph centered with a query-related example fact as context to understand the query relation. To encode prompt graphs with the generalization ability to unseen entities and relations in queries, we first propose a unified tokenizer that maps entities and relations in prompt graphs to predefined tokens. Then, we propose two message passing neural networks to perform prompt encoding and KG reasoning, respectively. We conduct evaluation on 43 different KGs in both transductive and inductive settings. Results indicate that the proposed KG-ICL outperforms baselines on most datasets, showcasing its outstanding generalization and universal reasoning capabilities. The source code is accessible on GitHub: https://github.com/nju-websoft/KG-ICL.

Chengyuan Yang, Zequn Sun, Wei Wei et al.

Memory management is vital for LLM agents to handle long-term interaction and personalization. Most research focuses on how to organize and use memory summary, but often overlooks the initial memory extraction stage. In this paper, we argue that existing summary-based methods have two major limitations based on the recurrent processing theory. First, summarization is "ahead-of-time", acting as a blind "feed-forward" process that misses important details because it doesn't know future tasks. Second, extraction is usually "one-off", lacking a feedback loop to verify facts, which leads to the accumulation of information loss. To address these issues, we propose proactive memory extraction (namely ProMem). Unlike static summarization, ProMem treats extraction as an iterative cognitive process. We introduce a recurrent feedback loop where the agent uses self-questioning to actively probe the dialogue history. This mechanism allows the agent to recover missing information and correct errors. Our ProMem significantly improves the completeness of the extracted memory and QA accuracy. It also achieves a superior trade-off between extraction quality and token cost.

Xianya Fang, Xianying Luo, Yadong Wang et al.

Despite the intrinsic risk-awareness of Large Language Models (LLMs), current defenses often result in shallow safety alignment, rendering models vulnerable to disguised attacks (e.g., prefilling) while degrading utility. To bridge this gap, we propose SafeThinker, an adaptive framework that dynamically allocates defensive resources via a lightweight gateway classifier. Based on the gateway's risk assessment, inputs are routed through three distinct mechanisms: (i) a Standardized Refusal Mechanism for explicit threats to maximize efficiency; (ii) a Safety-Aware Twin Expert (SATE) module to intercept deceptive attacks masquerading as benign queries; and (iii) a Distribution-Guided Think (DDGT) component that adaptively intervenes during uncertain generation. Experiments show that SafeThinker significantly lowers attack success rates across diverse jailbreak strategies without compromising utility, demonstrating that coordinating intrinsic judgment throughout the generation process effectively balances robustness and practicality.

Yuanning Cui, Zequn Sun, Wei Hu et al.

Entity alignment (EA) is critical for knowledge graph (KG) fusion. Existing EA models lack transferability and are incapable of aligning unseen KGs without retraining. While using graph foundation models (GFMs) offer a solution, we find that directly adapting GFMs to EA remains largely ineffective. This stems from a critical "reasoning horizon gap": unlike link prediction in GFMs, EA necessitates capturing long-range dependencies across sparse and heterogeneous KG structuresTo address this challenge, we propose a EA foundation model driven by a parallel encoding strategy. We utilize seed EA pairs as local anchors to guide the information flow, initializing and encoding two parallel streams simultaneously. This facilitates anchor-conditioned message passing and significantly shortens the inference trajectory by leveraging local structural proximity instead of global search. Additionally, we incorporate a merged relation graph to model global dependencies and a learnable interaction module for precise matching. Extensive experiments verify the effectiveness of our framework, highlighting its strong generalizability to unseen KGs.

Yuanning Cui, Zequn Sun, Wei Hu et al.

Large language models (LLMs) excel at reasoning but struggle with knowledge-intensive questions due to limited context and parametric knowledge. However, existing methods that rely on finetuned LLMs or GNN retrievers are limited by dataset-specific tuning and scalability on large or unseen graphs. We propose the LLM-KGFR collaborative framework, where an LLM works with a structured retriever, the Knowledge Graph Foundation Retriever (KGFR). KGFR encodes relations using LLM-generated descriptions and initializes entities based on their roles in the question, enabling zero-shot generalization to unseen KGs. To handle large graphs efficiently, it employs Asymmetric Progressive Propagation (APP)- a stepwise expansion that selectively limits high-degree nodes while retaining informative paths. Through node-, edge-, and path-level interfaces, the LLM iteratively requests candidate answers, supporting facts, and reasoning paths, forming a controllable reasoning loop. Experiments demonstrate that LLM-KGFR achieves strong performance while maintaining scalability and generalization, providing a practical solution for KG-augmented reasoning.

Zequn Sun, Qingheng Zhang, Wei Hu et al.

Entity alignment seeks to find entities in different knowledge graphs (KGs) that refer to the same real-world object. Recent advancement in KG embedding impels the advent of embedding-based entity alignment, which encodes entities in a continuous embedding space and measures entity similarities based on the learned embeddings. In this paper, we conduct a comprehensive experimental study of this emerging field. We survey 23 recent embedding-based entity alignment approaches and categorize them based on their techniques and characteristics. We also propose a new KG sampling algorithm, with which we generate a set of dedicated benchmark datasets with various heterogeneity and distributions for a realistic evaluation. We develop an open-source library including 12 representative embedding-based entity alignment approaches, and extensively evaluate these approaches, to understand their strengths and limitations. Additionally, for several directions that have not been explored in current approaches, we perform exploratory experiments and report our preliminary findings for future studies. The benchmark datasets, open-source library and experimental results are all accessible online and will be duly maintained.

Nan Jia, Haojin Yang, Xing Ma et al.

On-policy distillation (OPD) trains a student on its own trajectories with token-level teacher feedback and often outperforms off-policy distillation and standard reinforcement learning. However, we find that its standard advantage weighted policy gradient suffers from three structural weaknesses, including high variance updates, vanishing gradients in zero-advantage regions, and exploration bottlenecks when corrective signals are insufficient.We therefore propose Asymmetric On-Policy Distillation (AOPD), which replaces ineffective negative reinforcement with localized divergence minimization in non-positive advantage regions while preserving positive reinforcement learning. Experiments on mathematical reasoning benchmarks show that AOPD consistently outperforms standard OPD, with average gains of 4.09 / 8.34 under strong / weak initialization, respectively. AOPD also maintains higher policy entropy during training and better capability retention during sequential tool-use adaptation.

Xindi Luo, Zequn Sun, Jing Zhao et al.

Parameter-efficient finetuning (PEFT) is a key technique for adapting large language models (LLMs) to downstream tasks. In this paper, we study leveraging knowledge graph embeddings to improve the effectiveness of PEFT. We propose a knowledgeable adaptation method called KnowLA. It inserts an adaptation layer into an LLM to integrate the embeddings of entities appearing in the input text. The adaptation layer is trained in combination with LoRA on instruction data. Experiments on six benchmarks with two popular LLMs and three knowledge graphs demonstrate the effectiveness and robustness of KnowLA. We show that \modelname can help activate the relevant parameterized knowledge in an LLM to answer a question without changing its parameters or input prompts.

Xiaobin Tian, Zequn Sun, Wei Hu

Entity alignment (EA) seeks identical entities in different knowledge graphs, which is a long-standing task in the database research. Recent work leverages deep learning to embed entities in vector space and align them via nearest neighbor search. Although embedding-based EA has gained marked success in recent years, it lacks explanations for alignment decisions. In this paper, we present the first framework that can generate explanations for understanding and repairing embedding-based EA results. Given an EA pair produced by an embedding model, we first compare its neighbor entities and relations to build a matching subgraph as a local explanation. We then construct an alignment dependency graph to understand the pair from an abstract perspective. Finally, we repair the pair by resolving three types of alignment conflicts based on dependency graphs. Experiments on a variety of EA datasets demonstrate the effectiveness, generalization, and robustness of our framework in explaining and repairing embedding-based EA results.

Rongzhi Zhu, Xiangyu Liu, Zequn Sun et al.

In this paper, we identify a critical problem, "lost-in-retrieval", in retrieval-augmented multi-hop question answering (QA): the key entities are missed in LLMs' sub-question decomposition. "Lost-in-retrieval" significantly degrades the retrieval performance, which disrupts the reasoning chain and leads to the incorrect answers. To resolve this problem, we propose a progressive retrieval and rewriting method, namely ChainRAG, which sequentially handles each sub-question by completing missing key entities and retrieving relevant sentences from a sentence graph for answer generation. Each step in our retrieval and rewriting process builds upon the previous one, creating a seamless chain that leads to accurate retrieval and answers. Finally, all retrieved sentences and sub-question answers are integrated to generate a comprehensive answer to the original question. We evaluate ChainRAG on three multi-hop QA datasets - MuSiQue, 2Wiki, and HotpotQA - using three large language models: GPT4o-mini, Qwen2.5-72B, and GLM-4-Plus. Empirical results demonstrate that ChainRAG consistently outperforms baselines in both effectiveness and efficiency.

Rongzhi Zhu, Yi Liu, Zequn Sun et al.

Large reasoning models (LRMs) have significantly advanced performance on complex tasks, yet their tendency to overthink introduces inefficiencies. This study investigates the internal mechanisms of reinforcement learning (RL)-trained LRMs when prompted to save thinking, revealing three distinct thinking modes: no thinking (NT), explicit thinking (ET), and implicit thinking (IT). Through comprehensive analysis of confidence in thinking termination, attention from thinking to generation, and attentional focus on input sections, we uncover key factors influencing the reasoning behaviors. We further find that NT reduces output length at the cost of accuracy, while ET and IT maintain accuracy with reduced response length. Our findings expose fundamental inconsistencies in RL-optimized LRMs, necessitating adaptive improvements for reliable efficiency.

Yi Liu, Xiangyu Liu, Zequn Sun et al.

Large reasoning models (LRMs) have shown remarkable progress on complex reasoning tasks. However, some questions posed to LRMs are inherently unanswerable, such as math problems lacking sufficient conditions. We find that LRMs continually fail to provide appropriate abstentions when confronted with these unanswerable questions. In this paper, we systematically analyze, investigate, and resolve this issue for trustworthy AI. We first conduct a detailed analysis of the distinct response behaviors of LRMs when facing unanswerable questions. Then, we show that LRMs possess sufficient cognitive capabilities to recognize the flaws in these questions. However, they fail to exhibit appropriate abstention behavior, revealing a misalignment between their internal cognition and external response. Finally, to resolve this issue, we propose a lightweight, two-stage method that combines cognitive monitoring with inference-time intervention. Experimental results demonstrate that our method significantly improves the abstention rate while maintaining the overall reasoning performance.

Haojin Yang, Rui Hu, Zequn Sun et al.

Diffusion Language Models (DLMs) have shown strong potential for text generation and are becoming a competitive alternative to autoregressive models. The denoising strategy plays an important role in determining the quality of their outputs. Mainstream denoising strategies include Standard Diffusion and BlockDiffusion. Standard Diffusion performs global denoising without restricting the update range, often finalizing incomplete context and causing premature end-of-sequence predictions. BlockDiffusion updates fixed-size blocks in a preset order, but its rigid structure can break apart coherent semantic units and disrupt reasoning. We present WavefrontDiffusion, a dynamic decoding approach that expands a wavefront of active tokens outward from finalized positions. This adaptive process follows the natural flow of semantic structure while keeping computational cost equal to block-based methods. Across four benchmarks in reasoning and code generation, WavefrontDiffusion achieves state-of-the-art performance while producing outputs with higher semantic fidelity, showing the value of adaptive scheduling for more coherent and efficient generation.

Lingbing Guo, Weiqing Wang, Zhuo Chen et al.

Reasoning system dynamics is one of the most important analytical approaches for many scientific studies. With the initial state of a system as input, the recent graph neural networks (GNNs)-based methods are capable of predicting the future state distant in time with high accuracy. Although these methods have diverse designs in modeling the coordinates and interacting forces of the system, we show that they actually share a common paradigm that learns the integration of the velocity over the interval between the initial and terminal coordinates. However, their integrand is constant w.r.t. time. Inspired by this observation, we propose a new approach to predict the integration based on several velocity estimations with Newton-Cotes formulas and prove its effectiveness theoretically. Extensive experiments on several benchmarks empirically demonstrate consistent and significant improvement compared with the state-of-the-art methods.

Kexuan Xin, Zequn Sun, Wen Hua et al.

Entity alignment is a crucial step in integrating knowledge graphs (KGs) from multiple sources. Previous attempts at entity alignment have explored different KG structures, such as neighborhood-based and path-based contexts, to learn entity embeddings, but they are limited in capturing the multi-context features. Moreover, most approaches directly utilize the embedding similarity to determine entity alignment without considering the global interaction among entities and relations. In this work, we propose an Informed Multi-context Entity Alignment (IMEA) model to address these issues. In particular, we introduce Transformer to flexibly capture the relation, path, and neighborhood contexts, and design holistic reasoning to estimate alignment probabilities based on both embedding similarity and the relation/entity functionality. The alignment evidence obtained from holistic reasoning is further injected back into the Transformer via the proposed soft label editing to inform embedding learning. Experimental results on several benchmark datasets demonstrate the superiority of our IMEA model compared with existing state-of-the-art entity alignment methods.

Lingbing Guo, Zequn Sun, Mingyang Chen et al.

Embedding-based entity alignment (EEA) has recently received great attention. Despite significant performance improvement, few efforts have been paid to facilitate understanding of EEA methods. Most existing studies rest on the assumption that a small number of pre-aligned entities can serve as anchors connecting the embedding spaces of two KGs. Nevertheless, no one investigates the rationality of such an assumption. To fill the research gap, we define a typical paradigm abstracted from existing EEA methods and analyze how the embedding discrepancy between two potentially aligned entities is implicitly bounded by a predefined margin in the scoring function. Further, we find that such a bound cannot guarantee to be tight enough for alignment learning. We mitigate this problem by proposing a new approach, named NeoEA, to explicitly learn KG-invariant and principled entity embeddings. In this sense, an EEA model not only pursues the closeness of aligned entities based on geometric distance, but also aligns the neural ontologies of two KGs by eliminating the discrepancy in embedding distribution and underlying ontology knowledge. Our experiments demonstrate consistent and significant improvement in performance against the best-performing EEA methods.

Zequn Sun, Muhao Chen, Wei Hu

This paper studies a new problem setting of entity alignment for knowledge graphs (KGs). Since KGs possess different sets of entities, there could be entities that cannot find alignment across them, leading to the problem of dangling entities. As the first attempt to this problem, we construct a new dataset and design a multi-task learning framework for both entity alignment and dangling entity detection. The framework can opt to abstain from predicting alignment for the detected dangling entities. We propose three techniques for dangling entity detection that are based on the distribution of nearest-neighbor distances, i.e., nearest neighbor classification, marginal ranking and background ranking. After detecting and removing dangling entities, an incorporated entity alignment model in our framework can provide more robust alignment for remaining entities. Comprehensive experiments and analyses demonstrate the effectiveness of our framework. We further discover that the dangling entity detection module can, in turn, improve alignment learning and the final performance. The contributed resource is publicly available to foster further research.

Lingbing Guo, Zhuo Chen, Jiaoyan Chen et al.

Graph neural network (GNN)-based methods have demonstrated remarkable performance in various knowledge graph (KG) tasks. However, most existing approaches rely on observing all entities during training, posing a challenge in real-world knowledge graphs where new entities emerge frequently. To address this limitation, we introduce Decentralized Attention Network (DAN). DAN leverages neighbor context as the query vector to score the neighbors of an entity, thereby distributing the entity semantics only among its neighbor embeddings. To effectively train a DAN, we introduce self-distillation, a technique that guides the network in generating desired representations. Theoretical analysis validates the effectiveness of our approach. We implement an end-to-end framework and conduct extensive experiments to evaluate our method, showcasing competitive performance on conventional entity alignment and entity prediction tasks. Furthermore, our method significantly outperforms existing methods in open-world settings.

Zequn Sun, Muhao Chen, Wei Hu et al.

Capturing associations for knowledge graphs (KGs) through entity alignment, entity type inference and other related tasks benefits NLP applications with comprehensive knowledge representations. Recent related methods built on Euclidean embeddings are challenged by the hierarchical structures and different scales of KGs. They also depend on high embedding dimensions to realize enough expressiveness. Differently, we explore with low-dimensional hyperbolic embeddings for knowledge association. We propose a hyperbolic relational graph neural network for KG embedding and capture knowledge associations with a hyperbolic transformation. Extensive experiments on entity alignment and type inference demonstrate the effectiveness and efficiency of our method.

Zequn Sun, Jiacheng Huang, Wei Hu et al.

Learning knowledge graph (KG) embeddings has received increasing attention in recent years. Most embedding models in literature interpret relations as linear or bilinear mapping functions to operate on entity embeddings. However, we find that such relation-level modeling cannot capture the diverse relational structures of KGs well. In this paper, we propose a novel edge-centric embedding model TransEdge, which contextualizes relation representations in terms of specific head-tail entity pairs. We refer to such contextualized representations of a relation as edge embeddings and interpret them as translations between entity embeddings. TransEdge achieves promising performance on different prediction tasks. Our experiments on benchmark datasets indicate that it obtains the state-of-the-art results on embedding-based entity alignment. We also show that TransEdge is complementary with conventional entity alignment methods. Moreover, it shows very competitive performance on link prediction.

Zequn Sun, Chengming Wang, Wei Hu et al.

Graph neural networks (GNNs) have emerged as a powerful paradigm for embedding-based entity alignment due to their capability of identifying isomorphic subgraphs. However, in real knowledge graphs (KGs), the counterpart entities usually have non-isomorphic neighborhood structures, which easily causes GNNs to yield different representations for them. To tackle this problem, we propose a new KG alignment network, namely AliNet, aiming at mitigating the non-isomorphism of neighborhood structures in an end-to-end manner. As the direct neighbors of counterpart entities are usually dissimilar due to the schema heterogeneity, AliNet introduces distant neighbors to expand the overlap between their neighborhood structures. It employs an attention mechanism to highlight helpful distant neighbors and reduce noises. Then, it controls the aggregation of both direct and distant neighborhood information using a gating mechanism. We further propose a relation loss to refine entity representations. We perform thorough experiments with detailed ablation studies and analyses on five entity alignment datasets, demonstrating the effectiveness of AliNet.

Qingheng Zhang, Zequn Sun, Wei Hu et al.

We study the problem of embedding-based entity alignment between knowledge graphs (KGs). Previous works mainly focus on the relational structure of entities. Some further incorporate another type of features, such as attributes, for refinement. However, a vast of entity features are still unexplored or not equally treated together, which impairs the accuracy and robustness of embedding-based entity alignment. In this paper, we propose a novel framework that unifies multiple views of entities to learn embeddings for entity alignment. Specifically, we embed entities based on the views of entity names, relations and attributes, with several combination strategies. Furthermore, we design some cross-KG inference methods to enhance the alignment between two KGs. Our experiments on real-world datasets show that the proposed framework significantly outperforms the state-of-the-art embedding-based entity alignment methods. The selected views, cross-KG inference and combination strategies all contribute to the performance improvement.

Lingbing Guo, Zequn Sun, Wei Hu

We study the problem of knowledge graph (KG) embedding. A widely-established assumption to this problem is that similar entities are likely to have similar relational roles. However, existing related methods derive KG embeddings mainly based on triple-level learning, which lack the capability of capturing long-term relational dependencies of entities. Moreover, triple-level learning is insufficient for the propagation of semantic information among entities, especially for the case of cross-KG embedding. In this paper, we propose recurrent skipping networks (RSNs), which employ a skipping mechanism to bridge the gaps between entities. RSNs integrate recurrent neural networks (RNNs) with residual learning to efficiently capture the long-term relational dependencies within and between KGs. We design an end-to-end framework to support RSNs on different tasks. Our experimental results showed that RSNs outperformed state-of-the-art embedding-based methods for entity alignment and achieved competitive performance for KG completion.

Lingbing Guo, Zequn Sun, Ermei Cao et al.

We consider the problem of learning knowledge graph (KG) embeddings for entity alignment (EA). Current methods use the embedding models mainly focusing on triple-level learning, which lacks the ability of capturing long-term dependencies existing in KGs. Consequently, the embedding-based EA methods heavily rely on the amount of prior (known) alignment, due to the identity information in the prior alignment cannot be efficiently propagated from one KG to another. In this paper, we propose RSN4EA (recurrent skipping networks for EA), which leverages biased random walk sampling for generating long paths across KGs and models the paths with a novel recurrent skipping network (RSN). RSN integrates the conventional recurrent neural network (RNN) with residual learning and can largely improve the convergence speed and performance with only a few more parameters. We evaluated RSN4EA on a series of datasets constructed from real-world KGs. Our experimental results showed that it outperformed a number of state-of-the-art embedding-based EA methods and also achieved comparable performance for KG completion.

Zequn Sun, Wei Hu, Chengkai Li

Entity alignment is the task of finding entities in two knowledge bases (KBs) that represent the same real-world object. When facing KBs in different natural languages, conventional cross-lingual entity alignment methods rely on machine translation to eliminate the language barriers. These approaches often suffer from the uneven quality of translations between languages. While recent embedding-based techniques encode entities and relationships in KBs and do not need machine translation for cross-lingual entity alignment, a significant number of attributes remain largely unexplored. In this paper, we propose a joint attribute-preserving embedding model for cross-lingual entity alignment. It jointly embeds the structures of two KBs into a unified vector space and further refines it by leveraging attribute correlations in the KBs. Our experimental results on real-world datasets show that this approach significantly outperforms the state-of-the-art embedding approaches for cross-lingual entity alignment and could be complemented with methods based on machine translation.