Wallapak Tavanapong

Seok Hwan Song, Azher Ahmed Efat, Wallapak Tavanapong

Chart-to-table translation converts chart images into structured tabular data. Accurate translation is crucial for Multimodal Language Model (MLM) to answer complex queries. We observe imbalances in the number of images across different aspects of the y-axis information in public chart datasets. Such imbalances can introduce unintended biases, causing uneven MLM performance. Previous works have not systematically examined these biases. To address this gap, we propose a new framework, FairChart2Table, for analyzing y-axis-related bias on five state-of-the-art models. Key Findings: (1) There are significant y-axis biases related to the digit length of the major tick values, the number of major ticks, the range of values, and the tick value format (e.g., abbreviation or scientific format). (2) The number of legends/entities in chart images impacts MLM performance. (3) Prompting MLM with y-axis information can significantly enhance the performance for some MLMs.

Azher Ahmed Efat, Seok Hwan Song, Wallapak Tavanapong

Charts are widely used to present complex information. Deriving meaningful insights in real-world contexts often requires interpreting multiple related charts together. Research on understanding multi-chart images has not been extensively explored. We introduce PolyChartQA, a mid-scale dataset specifically designed for question answering over multi-chart images. PolyChartQA comprises 534 multi-chart images (with a total of 2,297 sub-charts) sourced from peer-reviewed computer science research publications and 2,694 QA pairs. We evaluate the performance of nine state-of-the-art Multimodal Language Models (MLMs) on PolyChartQA across question type, difficulty, question source, and key structural characteristics of multi-charts. Our results show a 27.4% LLM-based accuracy (L-Accuracy) drop on human-authored questions compared to MLM-generated questions, and a 5.39% L-accuracy gain with our proposed prompting method.

Abdurahman Ali Mohammed, Wallapak Tavanapong, Catherine Fonder et al.

Cell counting in biomedical imaging is pivotal for various clinical applications, yet the interpretability of deep learning models in this domain remains a significant challenge. We propose a novel prototype-based method for interpretable cell counting via density map estimation. Our approach integrates a prototype layer into the density estimation network, enabling the model to learn representative visual patterns for both cells and background artifacts. The learned prototypes were evaluated through a survey of biologists, who confirmed the relevance of the visual patterns identified, further validating the interpretability of the model. By generating interpretations that highlight regions in the input image most similar to each prototype, our method offers a clear understanding of how the model identifies and counts cells. Extensive experiments on two public datasets demonstrate that our method achieves interpretability without compromising counting effectiveness. This work provides researchers and clinicians with a transparent and reliable tool for cell counting, potentially increasing trust and accelerating the adoption of deep learning in critical biomedical applications. Code is available at https://github.com/NRT-D4/CountXplain.

Seok Hwan Song, Mohna Chakraborty, Qi Li et al.

Large Language Models (LLMs) have been evaluated using diverse question types, e.g., multiple-choice, true/false, and short/long answers. This study answers an unexplored question about the impact of different question types on LLM accuracy on reasoning tasks. We investigate the performance of five LLMs on three different types of questions using quantitative and deductive reasoning tasks. The performance metrics include accuracy in the reasoning steps and choosing the final answer. Key Findings: (1) Significant differences exist in LLM performance across different question types. (2) Reasoning accuracy does not necessarily correlate with the final selection accuracy. (3) The number of options and the choice of words, influence LLM performance.

Abdurahman Ali Mohammed, Catherine Fonder, Donald S. Sakaguchi et al.

We present a new annotated microscopic cellular image dataset to improve the effectiveness of machine learning methods for cellular image analysis. Cell counting is an important step in cell analysis. Typically, domain experts manually count cells in a microscopic image. Automated cell counting can potentially eliminate this tedious, time-consuming process. However, a good, labeled dataset is required for training an accurate machine learning model. Our dataset includes microscopic images of cells, and for each image, the cell count and the location of individual cells. The data were collected as part of an ongoing study investigating the potential of electrical stimulation to modulate stem cell differentiation and possible applications for neural repair. Compared to existing publicly available datasets, our dataset has more images of cells stained with more variety of antibodies (protein components of immune responses against invaders) typically used for cell analysis. The experimental results on this dataset indicate that none of the five existing models under this study are able to achieve sufficiently accurate count to replace the manual methods. The dataset is available at https://figshare.com/articles/dataset/Dataset/21970604.