Mingyu Yan

Xiaocheng Yang, Mingyu Yan, Shirui Pan et al.

Heterogeneous graph neural networks (HGNNs) have powerful capability to embed rich structural and semantic information of a heterogeneous graph into node representations. Existing HGNNs inherit many mechanisms from graph neural networks (GNNs) over homogeneous graphs, especially the attention mechanism and the multi-layer structure. These mechanisms bring excessive complexity, but seldom work studies whether they are really effective on heterogeneous graphs. This paper conducts an in-depth and detailed study of these mechanisms and proposes Simple and Efficient Heterogeneous Graph Neural Network (SeHGNN). To easily capture structural information, SeHGNN pre-computes the neighbor aggregation using a light-weight mean aggregator, which reduces complexity by removing overused neighbor attention and avoiding repeated neighbor aggregation in every training epoch. To better utilize semantic information, SeHGNN adopts the single-layer structure with long metapaths to extend the receptive field, as well as a transformer-based semantic fusion module to fuse features from different metapaths. As a result, SeHGNN exhibits the characteristics of simple network structure, high prediction accuracy, and fast training speed. Extensive experiments on five real-world heterogeneous graphs demonstrate the superiority of SeHGNN over the state-of-the-arts on both accuracy and training speed.

Haiyang Lin, Mingyu Yan, Xiaochun Ye et al.

Graph neural networks (GNNs) have been demonstrated to be a powerful algorithmic model in broad application fields for their effectiveness in learning over graphs. To scale GNN training up for large-scale and ever-growing graphs, the most promising solution is distributed training which distributes the workload of training across multiple computing nodes. At present, the volume of related research on distributed GNN training is exceptionally vast, accompanied by an extraordinarily rapid pace of publication. Moreover, the approaches reported in these studies exhibit significant divergence. This situation poses a considerable challenge for newcomers, hindering their ability to grasp a comprehensive understanding of the workflows, computational patterns, communication strategies, and optimization techniques employed in distributed GNN training. As a result, there is a pressing need for a survey to provide correct recognition, analysis, and comparisons in this field. In this paper, we provide a comprehensive survey of distributed GNN training by investigating various optimization techniques used in distributed GNN training. First, distributed GNN training is classified into several categories according to their workflows. In addition, their computational patterns and communication patterns, as well as the optimization techniques proposed by recent work are introduced. Second, the software frameworks and hardware platforms of distributed GNN training are also introduced for a deeper understanding. Third, distributed GNN training is compared with distributed training of deep neural networks, emphasizing the uniqueness of distributed GNN training. Finally, interesting issues and opportunities in this field are discussed.

Xin Liu, Xunbin Xiong, Mingyu Yan et al.

Large-scale graphs are ubiquitous in real-world scenarios and can be trained by Graph Neural Networks (GNNs) to generate representation for downstream tasks. Given the abundant information and complex topology of a large-scale graph, we argue that redundancy exists in such graphs and will degrade the training efficiency. Unfortunately, the model scalability severely restricts the efficiency of training large-scale graphs via vanilla GNNs. Despite recent advances in sampling-based training methods, sampling-based GNNs generally overlook the redundancy issue. It still takes intolerable time to train these models on large-scale graphs. Thereby, we propose to drop redundancy and improve efficiency of training large-scale graphs with GNNs, by rethinking the inherent characteristics in a graph. In this paper, we pioneer to propose a once-for-all method, termed DropReef, to drop the redundancy in large-scale graphs. Specifically, we first conduct preliminary experiments to explore potential redundancy in large-scale graphs. Next, we present a metric to quantify the neighbor heterophily of all nodes in a graph. Based on both experimental and theoretical analysis, we reveal the redundancy in a large-scale graph, i.e., nodes with high neighbor heterophily and a great number of neighbors. Then, we propose DropReef to detect and drop the redundancy in large-scale graphs once and for all, helping reduce the training time while ensuring no sacrifice in the model accuracy. To demonstrate the effectiveness of DropReef, we apply it to recent state-of-the-art sampling-based GNNs for training large-scale graphs, owing to the high precision of such models. With DropReef leveraged, the training efficiency of models can be greatly promoted. DropReef is highly compatible and is offline performed, benefiting the state-of-the-art sampling-based GNNs in the present and future to a significant extent.

Runzhen Xue, Mingyu Yan, Dengke Han et al.

Heterogeneous Graph Neural Networks (HGNNs) have expanded graph representation learning to heterogeneous graph fields. Recent studies have demonstrated their superior performance across various applications, including medical analysis and recommendation systems, often surpassing existing methods. However, GPUs often experience inefficiencies when executing HGNNs due to their unique and complex execution patterns. Compared to traditional Graph Neural Networks, these patterns further exacerbate irregularities in memory access. To tackle these challenges, recent studies have focused on developing domain-specific accelerators for HGNNs. Nonetheless, most of these efforts have concentrated on optimizing the datapath or scheduling data accesses, while largely overlooking the potential benefits that could be gained from leveraging the inherent properties of the semantic graph, such as its topology, layout, and generation. In this work, we focus on leveraging the properties of semantic graphs to enhance HGNN performance. First, we analyze the Semantic Graph Build (SGB) stage and identify significant opportunities for data reuse during semantic graph generation. Next, we uncover the phenomenon of buffer thrashing during the Graph Feature Processing (GFP) stage, revealing potential optimization opportunities in semantic graph layout. Furthermore, we propose a lightweight hardware accelerator frontend for HGNNs, called SiHGNN. This accelerator frontend incorporates a tree-based Semantic Graph Builder for efficient semantic graph generation and features a novel Graph Restructurer for optimizing semantic graph layouts. Experimental results show that SiHGNN enables the state-of-the-art HGNN accelerator to achieve an average performance improvement of 2.95$\times$.

Runzhen Xue, Hao Wu, Mingyu Yan et al.

Design Space Exploration (DSE) is essential to modern CPU design, yet current frameworks struggle to scale and generalize in high-dimensional architectural spaces. As the dimensionality of design spaces continues to grow, existing DSE frameworks face three fundamental challenges: (1) reduced accuracy and poor scalability of surrogate models in large design spaces; (2) inefficient acquisition guided by hand-crafted heuristics or exhaustive search; (3) limited interpretability, making it hard to pinpoint architectural bottlenecks. In this work, we present \textbf{AttentionDSE}, the first end-to-end DSE framework that \emph{natively integrates} performance prediction and design guidance through an attention-based neural architecture. Unlike traditional DSE workflows that separate surrogate modeling from acquisition and rely heavily on hand-crafted heuristics, AttentionDSE establishes a unified, learning-driven optimization loop, in which attention weights serve a dual role: enabling accurate performance estimation and simultaneously exposing the performance bottleneck. This paradigm shift elevates attention from a passive representation mechanism to an active, interpretable driver of design decision-making. Key innovations include: (1) a \textbf{Perception-Driven Attention} mechanism that exploits architectural hierarchy and locality, scaling attention complexity from $\mathcal{O}(n^2)$ to $\mathcal{O}(n)$ via sliding windows; (2) an \textbf{Attention-aware Bottleneck Analysis} that automatically surfaces critical parameters for targeted optimization, eliminating the need for domain-specific heuristics. Evaluated on high-dimensional CPU design space using the SPEC CPU2017 benchmark suite, AttentionDSE achieves up to \textbf{3.9\% higher Pareto Hypervolume} and over \textbf{80\% reduction in exploration time} compared to state-of-the-art baselines.

Xin Liu, Mingyu Yan, Lei Deng et al.

Graph neural networks (GNNs) have been a hot spot of recent research and are widely utilized in diverse applications. However, with the use of huger data and deeper models, an urgent demand is unsurprisingly made to accelerate GNNs for more efficient execution. In this paper, we provide a comprehensive survey on acceleration methods for GNNs from an algorithmic perspective. We first present a new taxonomy to classify existing acceleration methods into five categories. Based on the classification, we systematically discuss these methods and highlight their correlations. Next, we provide comparisons from aspects of the efficiency and characteristics of these methods. Finally, we suggest some promising prospects for future research.

Xin Liu, Mingyu Yan, Shuhan Song et al.

Sampling is a critical operation in Graph Neural Network (GNN) training that helps reduce the cost. Previous literature has explored improving sampling algorithms via mathematical and statistical methods. However, there is a gap between sampling algorithms and hardware. Without consideration of hardware, algorithm designers merely optimize sampling at the algorithm level, missing the great potential of promoting the efficiency of existing sampling algorithms by leveraging hardware features. In this paper, we pioneer to propose a unified programming model for mainstream sampling algorithms, termed GNNSampler, covering the critical processes of sampling algorithms in various categories. Second, to leverage the hardware feature, we choose the data locality as a case study, and explore the data locality among nodes and their neighbors in a graph to alleviate irregular memory access in sampling. Third, we implement locality-aware optimizations in GNNSampler for various sampling algorithms to optimize the general sampling process. Finally, we emphatically conduct experiments on large graph datasets to analyze the relevance among training time, accuracy, and hardware-level metrics. Extensive experiments show that our method is universal to mainstream sampling algorithms and helps significantly reduce the training time, especially in large-scale graphs.

Xin Liu, Mingyu Yan, Lei Deng et al.

Graph Convolutional Networks (GCNs) have received significant attention from various research fields due to the excellent performance in learning graph representations. Although GCN performs well compared with other methods, it still faces challenges. Training a GCN model for large-scale graphs in a conventional way requires high computation and storage costs. Therefore, motivated by an urgent need in terms of efficiency and scalability in training GCN, sampling methods have been proposed and achieved a significant effect. In this paper, we categorize sampling methods based on the sampling mechanisms and provide a comprehensive survey of sampling methods for efficient training of GCN. To highlight the characteristics and differences of sampling methods, we present a detailed comparison within each category and further give an overall comparative analysis for the sampling methods in all categories. Finally, we discuss some challenges and future research directions of the sampling methods.