Mohd Zaki

CL
h-index19
8papers
596citations
Novelty42%
AI Score44

8 Papers

2.9CLAug 17, 2023
MaScQA: A Question Answering Dataset for Investigating Materials Science Knowledge of Large Language Models

Mohd Zaki, Jayadeva, Mausam et al.

Information extraction and textual comprehension from materials literature are vital for developing an exhaustive knowledge base that enables accelerated materials discovery. Language models have demonstrated their capability to answer domain-specific questions and retrieve information from knowledge bases. However, there are no benchmark datasets in the materials domain that can evaluate the understanding of the key concepts by these language models. In this work, we curate a dataset of 650 challenging questions from the materials domain that require the knowledge and skills of a materials student who has cleared their undergraduate degree. We classify these questions based on their structure and the materials science domain-based subcategories. Further, we evaluate the performance of GPT-3.5 and GPT-4 models on solving these questions via zero-shot and chain of thought prompting. It is observed that GPT-4 gives the best performance (~62% accuracy) as compared to GPT-3.5. Interestingly, in contrast to the general observation, no significant improvement in accuracy is observed with the chain of thought prompting. To evaluate the limitations, we performed an error analysis, which revealed conceptual errors (~64%) as the major contributor compared to computational errors (~36%) towards the reduced performance of LLMs. We hope that the dataset and analysis performed in this work will promote further research in developing better materials science domain-specific LLMs and strategies for information extraction.

22.0CLJul 3, 2022Code
DiSCoMaT: Distantly Supervised Composition Extraction from Tables in Materials Science Articles

Tanishq Gupta, Mohd Zaki, Devanshi Khatsuriya et al.

A crucial component in the curation of KB for a scientific domain (e.g., materials science, foods & nutrition, fuels) is information extraction from tables in the domain's published research articles. To facilitate research in this direction, we define a novel NLP task of extracting compositions of materials (e.g., glasses) from tables in materials science papers. The task involves solving several challenges in concert, such as tables that mention compositions have highly varying structures; text in captions and full paper needs to be incorporated along with data in tables; and regular languages for numbers, chemical compounds and composition expressions must be integrated into the model. We release a training dataset comprising 4,408 distantly supervised tables, along with 1,475 manually annotated dev and test tables. We also present a strong baseline DISCOMAT, that combines multiple graph neural networks with several task-specific regular expressions, features, and constraints. We show that DISCOMAT outperforms recent table processing architectures by significant margins.

2.5CLOct 12, 2023Code
Reconstructing Materials Tetrahedron: Challenges in Materials Information Extraction

Kausik Hira, Mohd Zaki, Dhruvil Sheth et al.

The discovery of new materials has a documented history of propelling human progress for centuries and more. The behaviour of a material is a function of its composition, structure, and properties, which further depend on its processing and testing conditions. Recent developments in deep learning and natural language processing have enabled information extraction at scale from published literature such as peer-reviewed publications, books, and patents. However, this information is spread in multiple formats, such as tables, text, and images, and with little or no uniformity in reporting style giving rise to several machine learning challenges. Here, we discuss, quantify, and document these challenges in automated information extraction (IE) from materials science literature towards the creation of a large materials science knowledge base. Specifically, we focus on IE from text and tables and outline several challenges with examples. We hope the present work inspires researchers to address the challenges in a coherent fashion, providing a fillip to IE towards developing a materials knowledge base.

1.4CVNov 6, 2022
Cementron: Machine Learning the Constituent Phases in Cement Clinker from Optical Images

Mohd Zaki, Siddhant Sharma, Sunil Kumar Gurjar et al.

Cement is the most used construction material. The performance of cement hydrate depends on the constituent phases, viz. alite, belite, aluminate, and ferrites present in the cement clinker, both qualitatively and quantitatively. Traditionally, clinker phases are analyzed from optical images relying on a domain expert and simple image processing techniques. However, the non-uniformity of the images, variations in the geometry and size of the phases, and variabilities in the experimental approaches and imaging methods make it challenging to obtain the phases. Here, we present a machine learning (ML) approach to detect clinker microstructure phases automatically. To this extent, we create the first annotated dataset of cement clinker by segmenting alite and belite particles. Further, we use supervised ML methods to train models for identifying alite and belite regions. Specifically, we finetune the image detection and segmentation model Detectron-2 on the cement microstructure to develop a model for detecting the cement phases, namely, Cementron. We demonstrate that Cementron, trained only on literature data, works remarkably well on new images obtained from our experiments, demonstrating its generalizability. We make Cementron available for public use.

3.3DLOct 28, 2025Code
LeMat-Synth: a multi-modal toolbox to curate broad synthesis procedure databases from scientific literature

Magdalena Lederbauer, Siddharth Betala, Xiyao Li et al.

The development of synthesis procedures remains a fundamental challenge in materials discovery, with procedural knowledge scattered across decades of scientific literature in unstructured formats that are challenging for systematic analysis. In this paper, we propose a multi-modal toolbox that employs large language models (LLMs) and vision language models (VLMs) to automatically extract and organize synthesis procedures and performance data from materials science publications, covering text and figures. We curated 81k open-access papers, yielding LeMat-Synth (v 1.0): a dataset containing synthesis procedures spanning 35 synthesis methods and 16 material classes, structured according to an ontology specific to materials science. The extraction quality is rigorously evaluated on a subset of 2.5k synthesis procedures through a combination of expert annotations and a scalable LLM-as-a-judge framework. Beyond the dataset, we release a modular, open-source software library designed to support community-driven extension to new corpora and synthesis domains. Altogether, this work provides an extensible infrastructure to transform unstructured literature into machine-readable information. This lays the groundwork for predictive modeling of synthesis procedures as well as modeling synthesis--structure--property relationships.

12.2MTRL-SCIDec 12, 2024Code
Foundational Large Language Models for Materials Research

Vaibhav Mishra, Somaditya Singh, Dhruv Ahlawat et al.

Materials discovery and development are critical for addressing global challenges. Yet, the exponential growth in materials science literature comprising vast amounts of textual data has created significant bottlenecks in knowledge extraction, synthesis, and scientific reasoning. Large Language Models (LLMs) offer unprecedented opportunities to accelerate materials research through automated analysis and prediction. Still, their effective deployment requires domain-specific adaptation for understanding and solving domain-relevant tasks. Here, we present LLaMat, a family of foundational models for materials science developed through continued pretraining of LLaMA models on an extensive corpus of materials literature and crystallographic data. Through systematic evaluation, we demonstrate that LLaMat excels in materials-specific NLP and structured information extraction while maintaining general linguistic capabilities. The specialized LLaMat-CIF variant demonstrates unprecedented capabilities in crystal structure generation, predicting stable crystals with high coverage across the periodic table. Intriguingly, despite LLaMA-3's superior performance in comparison to LLaMA-2, we observe that LLaMat-2 demonstrates unexpectedly enhanced domain-specific performance across diverse materials science tasks, including structured information extraction from text and tables, more particularly in crystal structure generation, a potential adaptation rigidity in overtrained LLMs. Altogether, the present work demonstrates the effectiveness of domain adaptation towards developing practically deployable LLM copilots for materials research. Beyond materials science, our findings reveal important considerations for domain adaptation of LLMs, such as model selection, training methodology, and domain-specific performance, which may influence the development of specialized scientific AI systems.

5.1CYDec 18, 2024Code
Autonomous Microscopy Experiments through Large Language Model Agents

Indrajeet Mandal, Jitendra Soni, Mohd Zaki et al.

Large language models (LLMs) are revolutionizing self driving laboratories (SDLs) for materials research, promising unprecedented acceleration of scientific discovery. However, current SDL implementations rely on rigid protocols that fail to capture the adaptability and intuition of expert scientists in dynamic experimental settings. We introduce Artificially Intelligent Lab Assistant (AILA), a framework automating atomic force microscopy through LLM driven agents. Further, we develop AFMBench a comprehensive evaluation suite challenging AI agents across the complete scientific workflow from experimental design to results analysis. We find that state of the art models struggle with basic tasks and coordination scenarios. Notably, Claude 3.5 sonnet performs unexpectedly poorly despite excelling in materials domain question answering (QA) benchmarks, revealing that domain specific QA proficiency does not necessarily translate to effective agentic capabilities. Additionally, we observe that LLMs can deviate from instructions, raising safety alignment concerns for SDL applications. Our ablations reveal that multi agent frameworks outperform single-agent architectures. We also observe significant prompt fragility, where slight modifications in prompt structure cause substantial performance variations in capable models like GPT 4o. Finally, we evaluate AILA's effectiveness in increasingly advanced experiments AFM calibration, feature detection, mechanical property measurement, graphene layer counting, and indenter detection. Our findings underscore the necessity for rigorous benchmarking protocols and prompt engineering strategies before deploying AI laboratory assistants in scientific research environments.

10.2CLSep 30, 2021Code
MatSciBERT: A Materials Domain Language Model for Text Mining and Information Extraction

Tanishq Gupta, Mohd Zaki, N. M. Anoop Krishnan et al.

An overwhelmingly large amount of knowledge in the materials domain is generated and stored as text published in peer-reviewed scientific literature. Recent developments in natural language processing, such as bidirectional encoder representations from transformers (BERT) models, provide promising tools to extract information from these texts. However, direct application of these models in the materials domain may yield suboptimal results as the models themselves may not be trained on notations and jargon that are specific to the domain. Here, we present a materials-aware language model, namely, MatSciBERT, which is trained on a large corpus of scientific literature published in the materials domain. We further evaluate the performance of MatSciBERT on three downstream tasks, namely, abstract classification, named entity recognition, and relation extraction, on different materials datasets. We show that MatSciBERT outperforms SciBERT, a language model trained on science corpus, on all the tasks. Further, we discuss some of the applications of MatSciBERT in the materials domain for extracting information, which can, in turn, contribute to materials discovery or optimization. Finally, to make the work accessible to the larger materials community, we make the pretrained and finetuned weights and the models of MatSciBERT freely accessible.