MLApr 21, 2023
Machine Learning and the Future of Bayesian ComputationSteven Winter, Trevor Campbell, Lizhen Lin et al.
Bayesian models are a powerful tool for studying complex data, allowing the analyst to encode rich hierarchical dependencies and leverage prior information. Most importantly, they facilitate a complete characterization of uncertainty through the posterior distribution. Practical posterior computation is commonly performed via MCMC, which can be computationally infeasible for high dimensional models with many observations. In this article we discuss the potential to improve posterior computation using ideas from machine learning. Concrete future directions are explored in vignettes on normalizing flows, Bayesian coresets, distributed Bayesian inference, and variational inference.
MLFeb 16, 2023
Intrinsic and extrinsic deep learning on manifoldsYihao Fang, Ilsang Ohn, Vijay Gupta et al.
We propose extrinsic and intrinsic deep neural network architectures as general frameworks for deep learning on manifolds. Specifically, extrinsic deep neural networks (eDNNs) preserve geometric features on manifolds by utilizing an equivariant embedding from the manifold to its image in the Euclidean space. Moreover, intrinsic deep neural networks (iDNNs) incorporate the underlying intrinsic geometry of manifolds via exponential and log maps with respect to a Riemannian structure. Consequently, we prove that the empirical risk of the empirical risk minimizers (ERM) of eDNNs and iDNNs converge in optimal rates. Overall, The eDNNs framework is simple and easy to compute, while the iDNNs framework is accurate and fast converging. To demonstrate the utilities of our framework, various simulation studies, and real data analyses are presented with eDNNs and iDNNs.
OCDec 21, 2022
Extrinsic Bayesian Optimizations on ManifoldsYihao Fang, Mu Niu, Pokman Cheung et al.
We propose an extrinsic Bayesian optimization (eBO) framework for general optimization problems on manifolds. Bayesian optimization algorithms build a surrogate of the objective function by employing Gaussian processes and quantify the uncertainty in that surrogate by deriving an acquisition function. This acquisition function represents the probability of improvement based on the kernel of the Gaussian process, which guides the search in the optimization process. The critical challenge for designing Bayesian optimization algorithms on manifolds lies in the difficulty of constructing valid covariance kernels for Gaussian processes on general manifolds. Our approach is to employ extrinsic Gaussian processes by first embedding the manifold onto some higher dimensional Euclidean space via equivariant embeddings and then constructing a valid covariance kernel on the image manifold after the embedding. This leads to efficient and scalable algorithms for optimization over complex manifolds. Simulation study and real data analysis are carried out to demonstrate the utilities of our eBO framework by applying the eBO to various optimization problems over manifolds such as the sphere, the Grassmannian, and the manifold of positive definite matrices.
MLMar 5, 2023
A Semi-Bayesian Nonparametric Estimator of the Maximum Mean Discrepancy Measure: Applications in Goodness-of-Fit Testing and Generative Adversarial NetworksForough Fazeli-Asl, Michael Minyi Zhang, Lizhen Lin
A classic inferential statistical problem is the goodness-of-fit (GOF) test. Such a test can be challenging when the hypothesized parametric model has an intractable likelihood and its distributional form is not available. Bayesian methods for GOF can be appealing due to their ability to incorporate expert knowledge through prior distributions. However, standard Bayesian methods for this test often require strong distributional assumptions on the data and their relevant parameters. To address this issue, we propose a semi-Bayesian nonparametric (semi-BNP) procedure in the context of the maximum mean discrepancy (MMD) measure that can be applied to the GOF test. Our method introduces a novel Bayesian estimator for the MMD, enabling the development of a measure-based hypothesis test for intractable models. Through extensive experiments, we demonstrate that our proposed test outperforms frequentist MMD-based methods by achieving a lower false rejection and acceptance rate of the null hypothesis. Furthermore, we showcase the versatility of our approach by embedding the proposed estimator within a generative adversarial network (GAN) framework. It facilitates a robust BNP learning approach as another significant application of our method. With our BNP procedure, this new GAN approach can enhance sample diversity and improve inferential accuracy compared to traditional techniques.
MLFeb 25
Flow Matching is Adaptive to Manifold StructuresShivam Kumar, Yixin Wang, Lizhen Lin
Flow matching has emerged as a simulation-free alternative to diffusion-based generative modeling, producing samples by solving an ODE whose time-dependent velocity field is learned along an interpolation between a simple source distribution (e.g., a standard normal) and a target data distribution. Flow-based methods often exhibit greater training stability and have achieved strong empirical performance in high-dimensional settings where data concentrate near a low-dimensional manifold, such as text-to-image synthesis, video generation, and molecular structure generation. Despite this success, existing theoretical analyses of flow matching assume target distributions with smooth, full-dimensional densities, leaving its effectiveness in manifold-supported settings largely unexplained. To this end, we theoretically analyze flow matching with linear interpolation when the target distribution is supported on a smooth manifold. We establish a non-asymptotic convergence guarantee for the learned velocity field, and then propagate this estimation error through the ODE to obtain statistical consistency of the implicit density estimator induced by the flow-matching objective. The resulting convergence rate is near minimax-optimal, depends only on the intrinsic dimension, and reflects the smoothness of both the manifold and the target distribution. Together, these results provide a principled explanation for how flow matching adapts to intrinsic data geometry and circumvents the curse of dimensionality.
49.9MLMay 12
Posterior Contraction Rates for Sparse Kolmogorov-Arnold Networks in Anisotropic Besov SpacesJeunghun Oh, Kyeongwon Lee, Jaeyong Lee et al.
We study posterior contraction rates for sparse Bayesian Kolmogorov-Arnold networks (KANs) over anisotropic Besov spaces, providing a statistical foundation of KANs from a Bayesian point of view. We show that sparse Bayesian KANs equipped with spike-and-slab-type sparsity priors attain the near-minimax posterior contraction. In particular, the contraction rate depends on the intrinsic anisotropic smoothness of the underlying function. Moreover, by placing a hyperprior on a single model-size parameter, the resulting posterior adapts to unknown anisotropic smoothness and still achieves the corresponding near-minimax rate. A distinctive feature of our results, compared with those for standard sparse MLP-based models, is that the KAN depth can be kept fixed: owing to the flexibility of learnable spline edge functions, the required approximation complexity is controlled through the network width, spline-grid range and size, and parameter sparsity. Our analysis develops theoretical tools tailored to sparse spline-edge architectures, including approximation and complexity bounds for Bayesian KANs. We then extend to compositional Besov spaces and show that the contraction rates depend on layerwise smoothness and effective dimension of the underlying compositional structure, thereby effectively avoiding the curse of dimensionality. Together, the developed tools and findings advance the theoretical understanding of Bayesian neural networks and provide rigorous statistical foundations for KANs.
14.9MLApr 12
A Deep Generative Approach to Stratified LearningRandy Martinez, Rong Tang, Lizhen Lin
While the manifold hypothesis is widely adopted in modern machine learning, complex data is often better modeled as stratified spaces -- unions of manifolds (strata) of varying dimensions. Stratified learning is challenging due to varying dimensionality, intersection singularities, and lack of efficient models in learning the underlying distributions. We provide a deep generative approach to stratified learning by developing two generative frameworks for learning distributions on stratified spaces. The first is a sieve maximum likelihood approach realized via a dimension-aware mixture of variational autoencoders. The second is a diffusion-based framework that explores the score field structure of a mixture. We establish the convergence rates for learning both the ambient and intrinsic distributions, which are shown to be dependent on the intrinsic dimensions and smoothness of the underlying strata. Utilizing the geometry of the score field, we also establish consistency for estimating the intrinsic dimension of each stratum and propose an algorithm that consistently estimates both the number of strata and their dimensions. Theoretical results for both frameworks provide fundamental insights into the interplay of the underlying geometry, the ambient noise level, and deep generative models. Extensive simulations and real dataset applications, such as molecular dynamics, demonstrate the effectiveness of our methods.
MLJun 23, 2025
Posterior Contraction for Sparse Neural Networks in Besov Spaces with Intrinsic DimensionalityKyeongwon Lee, Lizhen Lin, Jaewoo Park et al.
This work establishes that sparse Bayesian neural networks achieve optimal posterior contraction rates over anisotropic Besov spaces and their hierarchical compositions. These structures reflect the intrinsic dimensionality of the underlying function, thereby mitigating the curse of dimensionality. Our analysis shows that Bayesian neural networks equipped with either sparse or continuous shrinkage priors attain the optimal rates which are dependent on the intrinsic dimension of the true structures. Moreover, we show that these priors enable rate adaptation, allowing the posterior to contract at the optimal rate even when the smoothness level of the true function is unknown. The proposed framework accommodates a broad class of functions, including additive and multiplicative Besov functions as special cases. These results advance the theoretical foundations of Bayesian neural networks and provide rigorous justification for their practical effectiveness in high-dimensional, structured estimation problems.
LGMay 15, 2025
Schreier-Coset Graph PropagationAryan Mishra, Lizhen Lin
Graph Neural Networks (GNNs) offer a principled framework for learning over graph-structured data, yet their expressive capacity is often hindered by over-squashing, wherein information from distant nodes is compressed into fixed-size vectors. Existing solutions, including graph rewiring and bottleneck-resistant architectures such as Cayley and expander graphs, avoid this problem but introduce scalability bottlenecks. In particular, the Cayley graphs constructed over $SL(2,\mathbb{Z}_n)$ exhibit strong theoretical properties, yet suffer from cubic node growth $O(n^3)$, leading to high memory usage. To address this, this work introduces Schrier-Coset Graph Propagation (SCGP), a group-theoretic augmentation method that enriches node features through Schreier-coset embeddings without altering the input graph topology. SCGP embeds bottleneck-free connectivity patterns into a compact feature space, improving long-range message passing while maintaining computational efficiency. Empirical evaluations across standard node and graph classification benchmarks demonstrate that SCGP achieves performance comparable to, or exceeding, expander graph and rewired GNN baselines. Furthermore, SCGP exhibits particular advantages in processing hierarchical and modular graph structures, offering reduced inference latency, improved scalability, and a low memory footprint, making it suitable for real-time and resource-constrained applications.
MLApr 16, 2025
Robust and Scalable Variational BayesCarlos Misael Madrid Padilla, Shitao Fan, Lizhen Lin
We propose a robust and scalable framework for variational Bayes (VB) that effectively handles outliers and contamination of arbitrary nature in large datasets. Our approach divides the dataset into disjoint subsets, computes the posterior for each subset, and applies VB approximation independently to these posteriors. The resulting variational posteriors with respect to the subsets are then aggregated using the geometric median of probability measures, computed with respect to the Wasserstein distance. This novel aggregation method yields the Variational Median Posterior (VM-Posterior) distribution. We rigorously demonstrate that the VM-Posterior preserves contraction properties akin to those of the true posterior, while accounting for approximation errors or the variational gap inherent in VB methods. We also provide provable robustness guarantee of the VM-Posterior. Furthermore, we establish a variational Bernstein-von Mises theorem for both multivariate Gaussian distributions with general covariance structures and the mean-field variational family. To facilitate practical implementation, we adapt existing algorithms for computing the VM-Posterior and evaluate its performance through extensive numerical experiments. The results highlight its robustness and scalability, making it a reliable tool for Bayesian inference in the presence of complex, contaminated datasets.
MLMay 29, 2023
A Bayesian sparse factor model with adaptive posterior concentrationIlsang Ohn, Lizhen Lin, Yongdai Kim
In this paper, we propose a new Bayesian inference method for a high-dimensional sparse factor model that allows both the factor dimensionality and the sparse structure of the loading matrix to be inferred. The novelty is to introduce a certain dependence between the sparsity level and the factor dimensionality, which leads to adaptive posterior concentration while keeping computational tractability. We show that the posterior distribution asymptotically concentrates on the true factor dimensionality, and more importantly, this posterior consistency is adaptive to the sparsity level of the true loading matrix and the noise variance. We also prove that the proposed Bayesian model attains the optimal detection rate of the factor dimensionality in a more general situation than those found in the literature. Moreover, we obtain a near-optimal posterior concentration rate of the covariance matrix. Numerical studies are conducted and show the superiority of the proposed method compared with other competitors.
LGNov 25, 2021
Robustness against Adversarial Attacks in Neural Networks using Incremental DissipativityBernardo Aquino, Arash Rahnama, Peter Seiler et al.
Adversarial examples can easily degrade the classification performance in neural networks. Empirical methods for promoting robustness to such examples have been proposed, but often lack both analytical insights and formal guarantees. Recently, some robustness certificates have appeared in the literature based on system theoretic notions. This work proposes an incremental dissipativity-based robustness certificate for neural networks in the form of a linear matrix inequality for each layer. We also propose an equivalent spectral norm bound for this certificate which is scalable to neural networks with multiple layers. We demonstrate the improved performance against adversarial attacks on a feed-forward neural network trained on MNIST and an Alexnet trained using CIFAR-10.
STSep 7, 2021
Adaptive variational Bayes: Optimality, computation and applicationsIlsang Ohn, Lizhen Lin
In this paper, we explore adaptive inference based on variational Bayes. Although several studies have been conducted to analyze the contraction properties of variational posteriors, there is still a lack of a general and computationally tractable variational Bayes method that performs adaptive inference. To fill this gap, we propose a novel adaptive variational Bayes framework, which can operate on a collection of models. The proposed framework first computes a variational posterior over each individual model separately and then combines them with certain weights to produce a variational posterior over the entire model. It turns out that this combined variational posterior is the closest member to the posterior over the entire model in a predefined family of approximating distributions. We show that the adaptive variational Bayes attains optimal contraction rates adaptively under very general conditions. We also provide a methodology to maintain the tractability and adaptive optimality of the adaptive variational Bayes even in the presence of an enormous number of individual models, such as sparse models. We apply the general results to several examples, including deep learning and sparse factor models, and derive new and adaptive inference results. In addition, we characterize an implicit regularization effect of variational Bayes and show that the adaptive variational posterior can utilize this.
LGSep 4, 2021
Training Graph Neural Networks by Graphon EstimationZiqing Hu, Yihao Fang, Lizhen Lin
In this work, we propose to train a graph neural network via resampling from a graphon estimate obtained from the underlying network data. More specifically, the graphon or the link probability matrix of the underlying network is first obtained from which a new network will be resampled and used during the training process at each layer. Due to the uncertainty induced from the resampling, it helps mitigate the well-known issue of over-smoothing in a graph neural network (GNN) model. Our framework is general, computationally efficient, and conceptually simple. Another appealing feature of our method is that it requires minimal additional tuning during the training process. Extensive numerical results show that our approach is competitive with and in many cases outperform the other over-smoothing reducing GNN training methods.
MLMay 9, 2021
A likelihood approach to nonparametric estimation of a singular distribution using deep generative modelsMinwoo Chae, Dongha Kim, Yongdai Kim et al.
We investigate statistical properties of a likelihood approach to nonparametric estimation of a singular distribution using deep generative models. More specifically, a deep generative model is used to model high-dimensional data that are assumed to concentrate around some low-dimensional structure. Estimating the distribution supported on this low-dimensional structure, such as a low-dimensional manifold, is challenging due to its singularity with respect to the Lebesgue measure in the ambient space. In the considered model, a usual likelihood approach can fail to estimate the target distribution consistently due to the singularity. We prove that a novel and effective solution exists by perturbing the data with an instance noise, which leads to consistent estimation of the underlying distribution with desirable convergence rates. We also characterize the class of distributions that can be efficiently estimated via deep generative models. This class is sufficiently general to contain various structured distributions such as product distributions, classically smooth distributions and distributions supported on a low-dimensional manifold. Our analysis provides some insights on how deep generative models can avoid the curse of dimensionality for nonparametric distribution estimation. We conduct a thorough simulation study and real data analysis to empirically demonstrate that the proposed data perturbation technique improves the estimation performance significantly.
COOct 18, 2020
Accelerated Algorithms for Convex and Non-Convex Optimization on ManifoldsLizhen Lin, Bayan Saparbayeva, Michael Minyi Zhang et al.
We propose a general scheme for solving convex and non-convex optimization problems on manifolds. The central idea is that, by adding a multiple of the squared retraction distance to the objective function in question, we "convexify" the objective function and solve a series of convex sub-problems in the optimization procedure. One of the key challenges for optimization on manifolds is the difficulty of verifying the complexity of the objective function, e.g., whether the objective function is convex or non-convex, and the degree of non-convexity. Our proposed algorithm adapts to the level of complexity in the objective function. We show that when the objective function is convex, the algorithm provably converges to the optimum and leads to accelerated convergence. When the objective function is non-convex, the algorithm will converge to a stationary point. Our proposed method unifies insights from Nesterov's original idea for accelerating gradient descent algorithms with recent developments in optimization algorithms in Euclidean space. We demonstrate the utility of our algorithms on several manifold optimization tasks such as estimating intrinsic and extrinsic Fréchet means on spheres and low-rank matrix factorization with Grassmann manifolds applied to the Netflix rating data set.
SISep 29, 2020
Community detection, pattern recognition, and hypergraph-based learning: approaches using metric geometry and persistent homologyDong Quan Ngoc Nguyen, Lin Xing, Lizhen Lin
Hypergraph data appear and are hidden in many places in the modern age. They are data structure that can be used to model many real data examples since their structures contain information about higher order relations among data points. One of the main contributions of our paper is to introduce a new topological structure to hypergraph data which bears a resemblance to a usual metric space structure. Using this new topological space structure of hypergraph data, we propose several approaches to study community detection problem, detecting persistent features arising from homological structure of hypergraph data. Also based on the topological space structure of hypergraph data introduced in our paper, we introduce a modified nearest neighbors methods which is a generalization of the classical nearest neighbors methods from machine learning. Our modified nearest neighbors methods have an advantage of being very flexible and applicable even for discrete structures as in hypergraphs. We then apply our modified nearest neighbors methods to study sign prediction problem in hypegraph data constructed using our method.
SISep 29, 2020
Weight Prediction for Variants of Weighted Directed NetworksDong Quan Ngoc Nguyen, Lin Xing, Lizhen Lin
A weighted directed network (WDN) is a directed graph in which each edge is associated to a unique value called weight. These networks are very suitable for modeling real-world social networks in which there is an assessment of one vertex toward other vertices. One of the main problems studied in this paper is prediction of edge weights in such networks. We introduce, for the first time, a metric geometry approach to studying edge weight prediction in WDNs. We modify a usual notion of WDNs, and introduce a new type of WDNs which we coin the term \textit{almost-weighted directed networks} (AWDNs). AWDNs can capture the weight information of a network from a given training set. We then construct a class of metrics (or distances) for AWDNs which equips such networks with a metric space structure. Using the metric geometry structure of AWDNs, we propose modified $k$ nearest neighbors (kNN) methods and modified support-vector machine (SVM) methods which will then be used to predict edge weights in AWDNs. In many real-world datasets, in addition to edge weights, one can also associate weights to vertices which capture information of vertices; association of weights to vertices especially plays an important role in graph embedding problems. Adopting a similar approach, we introduce two new types of directed networks in which weights are associated to either a subset of origin vertices or a subset of terminal vertices . We, for the first time, construct novel classes of metrics on such networks, and based on these new metrics propose modified $k$NN and SVM methods for predicting weights of origins and terminals in these networks. We provide experimental results on several real-world datasets, using our geometric methodologies.
NASep 8, 2020
Neural-PDE: A RNN based neural network for solving time dependent PDEsYihao Hu, Tong Zhao, Shixin Xu et al.
Partial differential equations (PDEs) play a crucial role in studying a vast number of problems in science and engineering. Numerically solving nonlinear and/or high-dimensional PDEs is often a challenging task. Inspired by the traditional finite difference and finite elements methods and emerging advancements in machine learning, we propose a sequence deep learning framework called Neural-PDE, which allows to automatically learn governing rules of any time-dependent PDE system from existing data by using a bidirectional LSTM encoder, and predict the next n time steps data. One critical feature of our proposed framework is that the Neural-PDE is able to simultaneously learn and simulate the multiscale variables.We test the Neural-PDE by a range of examples from one-dimensional PDEs to a high-dimensional and nonlinear complex fluids model. The results show that the Neural-PDE is capable of learning the initial conditions, boundary conditions and differential operators without the knowledge of the specific form of a PDE system.In our experiments the Neural-PDE can efficiently extract the dynamics within 20 epochs training, and produces accurate predictions. Furthermore, unlike the traditional machine learning approaches in learning PDE such as CNN and MLP which require vast parameters for model precision, Neural-PDE shares parameters across all time steps, thus considerably reduces the computational complexity and leads to a fast learning algorithm.
LGAug 21, 2020
Optimization of Graph Neural Networks with Natural Gradient DescentMohammad Rasool Izadi, Yihao Fang, Robert Stevenson et al.
In this work, we propose to employ information-geometric tools to optimize a graph neural network architecture such as the graph convolutional networks. More specifically, we develop optimization algorithms for the graph-based semi-supervised learning by employing the natural gradient information in the optimization process. This allows us to efficiently exploit the geometry of the underlying statistical model or parameter space for optimization and inference. To the best of our knowledge, this is the first work that has utilized the natural gradient for the optimization of graph neural networks that can be extended to other semi-supervised problems. Efficient computations algorithms are developed and extensive numerical studies are conducted to demonstrate the superior performance of our algorithms over existing algorithms such as ADAM and SGD.
SIMar 30, 2019
Hierarchical Stochastic Block Model for Community Detection in Multiplex NetworksArash A. Amini, Marina S. Paez, Lizhen Lin
Multiplex networks have become increasingly more prevalent in many fields, and have emerged as a powerful tool for modeling the complexity of real networks. There is a critical need for developing inference models for multiplex networks that can take into account potential dependencies across different layers, particularly when the aim is community detection. We add to a limited literature by proposing a novel and efficient Bayesian model for community detection in multiplex networks. A key feature of our approach is the ability to model varying communities at different network layers. In contrast, many existing models assume the same communities for all layers. Moreover, our model automatically picks up the necessary number of communities at each layer (as validated by real data examples). This is appealing, since deciding the number of communities is a challenging aspect of community detection, and especially so in the multiplex setting, if one allows the communities to change across layers. Borrowing ideas from hierarchical Bayesian modeling, we use a hierarchical Dirichlet prior to model community labels across layers, allowing dependency in their structure. Given the community labels, a stochastic block model (SBM) is assumed for each layer. We develop an efficient slice sampler for sampling the posterior distribution of the community labels as well as the link probabilities between communities. In doing so, we address some unique challenges posed by coupling the complex likelihood of SBM with the hierarchical nature of the prior on the labels. An extensive empirical validation is performed on simulated and real data, demonstrating the superior performance of the model over single-layer alternatives, as well as the ability to uncover interesting structures in real networks.
MLMar 21, 2019
Exact slice sampler for Hierarchical Dirichlet ProcessesArash A. Amini, Marina Paez, Lizhen Lin et al.
We propose an exact slice sampler for Hierarchical Dirichlet process (HDP) and its associated mixture models (Teh et al., 2006). Although there are existing MCMC algorithms for sampling from the HDP, a slice sampler has been missing from the literature. Slice sampling is well-known for its desirable properties including its fast mixing and its natural potential for parallelization. On the other hand, the hierarchical nature of HDPs poses challenges to adopting a full-fledged slice sampler that automatically truncates all the infinite measures involved without ad-hoc modifications. In this work, we adopt the powerful idea of Bayesian variable augmentation to address this challenge. By introducing new latent variables, we obtain a full factorization of the joint distribution that is suitable for slice sampling. Our algorithm has several appealing features such as (1) fast mixing; (2) remaining exact while allowing natural truncation of the underlying infinite-dimensional measures, as in (Kalli et al., 2011), resulting in updates of only a finite number of necessary atoms and weights in each iteration; and (3) being naturally suited to parallel implementations. The underlying principle for joint factorization of the full likelihood is simple and can be applied to many other settings, such as designing sampling algorithms for general dependent Dirichlet process (DDP) models.
MLOct 26, 2018
Communication Efficient Parallel Algorithms for Optimization on ManifoldsBayan Saparbayeva, Michael Minyi Zhang, Lizhen Lin
The last decade has witnessed an explosion in the development of models, theory and computational algorithms for "big data" analysis. In particular, distributed computing has served as a natural and dominating paradigm for statistical inference. However, the existing literature on parallel inference almost exclusively focuses on Euclidean data and parameters. While this assumption is valid for many applications, it is increasingly more common to encounter problems where the data or the parameters lie on a non-Euclidean space, like a manifold for example. Our work aims to fill a critical gap in the literature by generalizing parallel inference algorithms to optimization on manifolds. We show that our proposed algorithm is both communication efficient and carries theoretical convergence guarantees. In addition, we demonstrate the performance of our algorithm to the estimation of Fréchet means on simulated spherical data and the low-rank matrix completion problem over Grassmann manifolds applied to the Netflix prize data set.
MLOct 5, 2018
Network Distance Based on Laplacian Flows on GraphsDianbin Bao, Kisung You, Lizhen Lin
Distance plays a fundamental role in measuring similarity between objects. Various visualization techniques and learning tasks in statistics and machine learning such as shape matching, classification, dimension reduction and clustering often rely on some distance or similarity measure. It is of tremendous importance to have a distance that can incorporate the underlying structure of the object. In this paper, we focus on proposing such a distance between network objects. Our key insight is to define a distance based on the long term diffusion behavior of the whole network. We first introduce a dynamic system on graphs called Laplacian flow. Based on this Laplacian flow, a new version of diffusion distance between networks is proposed. We will demonstrate the utility of the distance and its advantage over various existing distances through explicit examples. The distance is also applied to subsequent learning tasks such as clustering network objects.
MLJan 3, 2018
Intrinsic Gaussian processes on complex constrained domainsMu Niu, Pokman Cheung, Lizhen Lin et al.
We propose a class of intrinsic Gaussian processes (in-GPs) for interpolation, regression and classification on manifolds with a primary focus on complex constrained domains or irregular shaped spaces arising as subsets or submanifolds of R, R2, R3 and beyond. For example, in-GPs can accommodate spatial domains arising as complex subsets of Euclidean space. in-GPs respect the potentially complex boundary or interior conditions as well as the intrinsic geometry of the spaces. The key novelty of the proposed approach is to utilise the relationship between heat kernels and the transition density of Brownian motion on manifolds for constructing and approximating valid and computationally feasible covariance kernels. This enables in-GPs to be practically applied in great generality, while existing approaches for smoothing on constrained domains are limited to simple special cases. The broad utilities of the in-GP approach is illustrated through simulation studies and data examples.
MLOct 19, 2016
Robust and Parallel Bayesian Model SelectionMichael Minyi Zhang, Henry Lam, Lizhen Lin
Effective and accurate model selection is an important problem in modern data analysis. One of the major challenges is the computational burden required to handle large data sets that cannot be stored or processed on one machine. Another challenge one may encounter is the presence of outliers and contaminations that damage the inference quality. The parallel "divide and conquer" model selection strategy divides the observations of the full data set into roughly equal subsets and perform inference and model selection independently on each subset. After local subset inference, this method aggregates the posterior model probabilities or other model/variable selection criteria to obtain a final model by using the notion of geometric median. This approach leads to improved concentration in finding the "correct" model and model parameters and also is provably robust to outliers and data contamination.
MLJun 8, 2016
On clustering network-valued dataSoumendu Sundar Mukherjee, Purnamrita Sarkar, Lizhen Lin
Community detection, which focuses on clustering nodes or detecting communities in (mostly) a single network, is a problem of considerable practical interest and has received a great deal of attention in the research community. While being able to cluster within a network is important, there are emerging needs to be able to cluster multiple networks. This is largely motivated by the routine collection of network data that are generated from potentially different populations. These networks may or may not have node correspondence. When node correspondence is present, we cluster networks by summarizing a network by its graphon estimate, whereas when node correspondence is not present, we propose a novel solution for clustering such networks by associating a computationally feasible feature vector to each network based on trace of powers of the adjacency matrix. We illustrate our methods using both simulated and real data sets, and theoretical justifications are provided in terms of consistency.
STMar 11, 2014
Robust and Scalable Bayes via a Median of Subset Posterior MeasuresStanislav Minsker, Sanvesh Srivastava, Lizhen Lin et al.
We propose a novel approach to Bayesian analysis that is provably robust to outliers in the data and often has computational advantages over standard methods. Our technique is based on splitting the data into non-overlapping subgroups, evaluating the posterior distribution given each independent subgroup, and then combining the resulting measures. The main novelty of our approach is the proposed aggregation step, which is based on the evaluation of a median in the space of probability measures equipped with a suitable collection of distances that can be quickly and efficiently evaluated in practice. We present both theoretical and numerical evidence illustrating the improvements achieved by our method.