Jacob Jaremko

Assefa Wahd, Jacob Jaremko, Abhilash Hareendranathan

In-context learning (ICL) enables generalization to new tasks with minimal labeled data. However, mainstream ICL approaches rely on a gridding strategy, which lacks the flexibility required for vision applications. We introduce Temporal, a time-contrastive self-supervised objective that pretrains a prompt retriever for visual ICL, and formulate ICL as a video object segmentation (VOS) task. Temporal addresses key limitations of grid-based methods that restrict the number and resolution of context images. By reframing ICL as a VOS problem, our approach supports a variable number of context images while preserving their full resolution. To address the challenge of selecting optimal context sets for queries, we pretrain a prompt retriever on videos via self-supervised learning, where adjacent frames serve as positives and distant frames as negatives. For image segmentation, the prompt retriever selects relevant sequences that, when combined with the query, form coherent videos for VOS processing. For video segmentation, it identifies keyframes, predicts their masks using our ICL pipeline, and propagates them throughout the sequence. When evaluated on MICCAI FLARE 2022, our method achieves substantial improvements over baselines: 90.95% Dice score for image segmentation (10.64% improvement) and 92.45% Dice for video segmentation (14.88% improvement).

Arpan Tripathi, Abhilash Rakkunedeth, Mahesh Raveendranatha Panicker et al.

Most applications of deep learning techniques in medical imaging are supervised and require a large number of labeled data which is expensive and requires many hours of careful annotation by experts. In this paper, we propose an unsupervised, physics driven domain specific transporter framework with an attention mechanism to identify relevant key points with applications in ultrasound imaging. The proposed framework identifies key points that provide a concise geometric representation highlighting regions with high structural variation in ultrasound videos. We incorporate physics driven domain specific information as a feature probability map and use the radon transform to highlight features in specific orientations. The proposed framework has been trained on130 Lung ultrasound (LUS) videos and 113 Wrist ultrasound (WUS) videos and validated on 100 Lung ultrasound (LUS) videos and 58 Wrist ultrasound (WUS) videos acquired from multiple centers across the globe. Images from both datasets were independently assessed by experts to identify clinically relevant features such as A-lines, B-lines and pleura from LUS and radial metaphysis, radial epiphysis and carpal bones from WUS videos. The key points detected from both datasets showed high sensitivity (LUS = 99\% , WUS = 74\%) in detecting the image landmarks identified by experts. Also, on employing for classification of the given lung image into normal and abnormal classes, the proposed approach, even with no prior training, achieved an average accuracy of 97\% and an average F1-score of 95\% respectively on the task of co-classification with 3 fold cross-validation. With the purely unsupervised nature of the proposed approach, we expect the key point detection approach to increase the applicability of ultrasound in various examination performed in emergency and point of care.

Arpan Tripathi, Abhilash Rakkunedeth, Mahesh Raveendranatha Panicker et al.

Ultrasound examination for detecting fractures is ideally suited for Emergency Departments (ED) as it is relatively fast, safe (from ionizing radiation), has dynamic imaging capability and is easily portable. High interobserver variability in manual assessment of ultrasound scans has piqued research interest in automatic assessment techniques using Deep Learning (DL). Most DL techniques are supervised and are trained on large numbers of labeled data which is expensive and requires many hours of careful annotation by experts. In this paper, we propose an unsupervised, domain specific transporter framework to identify relevant keypoints from wrist ultrasound scans. Our framework provides a concise geometric representation highlighting regions with high structural variation in a 3D ultrasound (3DUS) sequence. We also incorporate domain specific information represented by instantaneous local phase (LP) which detects bone features from 3DUS. We validate the technique on 3DUS videos obtained from 30 subjects. Each ultrasound scan was independently assessed by three readers to identify fractures along with the corresponding x-ray. Saliency of keypoints detected in the image\ are compared against manual assessment based on distance from relevant features.The transporter neural network was able to accurately detect 180 out of 250 bone regions sampled from wrist ultrasound videos. We expect this technique to increase the applicability of ultrasound in fracture detection.