Petr Karnakov

h-index11
2papers

2 Papers

CVSep 30, 2024
Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization

Michal Balcerak, Tamaz Amiranashvili, Andreas Wagner et al.

Physical models in the form of partial differential equations serve as important priors for many under-constrained problems. One such application is tumor treatment planning, which relies on accurately estimating the spatial distribution of tumor cells within a patient's anatomy. While medical imaging can detect the bulk of a tumor, it cannot capture the full extent of its spread, as low-concentration tumor cells often remain undetectable, particularly in glioblastoma, the most common primary brain tumor. Machine learning approaches struggle to estimate the complete tumor cell distribution due to a lack of appropriate training data. Consequently, most existing methods rely on physics-based simulations to generate anatomically and physiologically plausible estimations. However, these approaches face challenges with complex and unknown initial conditions and are constrained by overly rigid physical models. In this work, we introduce a novel method that integrates data-driven and physics-based cost functions, akin to Physics-Informed Neural Networks (PINNs). However, our approach parametrizes the solution directly on a dynamic discrete mesh, allowing for the effective modeling of complex biomechanical behaviors. Specifically, we propose a unique discretization scheme that quantifies how well the learned spatiotemporal distributions of tumor and brain tissues adhere to their respective growth and elasticity equations. This quantification acts as a regularization term, offering greater flexibility and improved integration of patient data compared to existing models. We demonstrate enhanced coverage of tumor recurrence areas using real-world data from a patient cohort, highlighting the potential of our method to improve model-driven treatment planning for glioblastoma in clinical practice.

FLU-DYNJun 19, 2025
Contactless Precision Steering of Particles in a Fluid inside a Cube with Rotating Walls

Lucas Amoudruz, Petr Karnakov, Petros Koumoutsakos

Contactless manipulation of small objects is essential for biomedical and chemical applications, such as cell analysis, assisted fertilisation, and precision chemistry. Established methods, including optical, acoustic, and magnetic tweezers, are now complemented by flow control techniques that use flow-induced motion to enable precise and versatile manipulation. However, trapping multiple particles in fluid remains a challenge. This study introduces a novel control algorithm capable of steering multiple particles in flow. The system uses rotating disks to generate flow fields that transport particles to precise locations. Disk rotations are governed by a feedback control policy based on the Optimising a Discrete Loss (ODIL) framework, which combines fluid dynamics equations with path objectives into a single loss function. Our experiments, conducted in both simulations and with the physical device, demonstrate the capability of the approach to transport two beads simultaneously to predefined locations, advancing robust contactless particle manipulation for biomedical applications.