Wojciech Kusa

BigScience Workshop, Teven Le Scao, Angela Fan et al. · allen-ai, berkeley

Large language models (LLMs) have been shown to be able to perform new tasks based on a few demonstrations or natural language instructions. While these capabilities have led to widespread adoption, most LLMs are developed by resource-rich organizations and are frequently kept from the public. As a step towards democratizing this powerful technology, we present BLOOM, a 176B-parameter open-access language model designed and built thanks to a collaboration of hundreds of researchers. BLOOM is a decoder-only Transformer language model that was trained on the ROOTS corpus, a dataset comprising hundreds of sources in 46 natural and 13 programming languages (59 in total). We find that BLOOM achieves competitive performance on a wide variety of benchmarks, with stronger results after undergoing multitask prompted finetuning. To facilitate future research and applications using LLMs, we publicly release our models and code under the Responsible AI License.

Jason Alan Fries, Leon Weber, Natasha Seelam et al. · stanford, utoronto

Training and evaluating language models increasingly requires the construction of meta-datasets --diverse collections of curated data with clear provenance. Natural language prompting has recently lead to improved zero-shot generalization by transforming existing, supervised datasets into a diversity of novel pretraining tasks, highlighting the benefits of meta-dataset curation. While successful in general-domain text, translating these data-centric approaches to biomedical language modeling remains challenging, as labeled biomedical datasets are significantly underrepresented in popular data hubs. To address this challenge, we introduce BigBIO a community library of 126+ biomedical NLP datasets, currently covering 12 task categories and 10+ languages. BigBIO facilitates reproducible meta-dataset curation via programmatic access to datasets and their metadata, and is compatible with current platforms for prompt engineering and end-to-end few/zero shot language model evaluation. We discuss our process for task schema harmonization, data auditing, contribution guidelines, and outline two illustrative use cases: zero-shot evaluation of biomedical prompts and large-scale, multi-task learning. BigBIO is an ongoing community effort and is available at https://github.com/bigscience-workshop/biomedical

Wojciech Kusa, Petr Knoth, Allan Hanbury

Keeping up with research and finding related work is still a time-consuming task for academics. Researchers sift through thousands of studies to identify a few relevant ones. Automation techniques can help by increasing the efficiency and effectiveness of this task. To this end, we developed CRUISE-Screening, a web-based application for conducting living literature reviews - a type of literature review that is continuously updated to reflect the latest research in a particular field. CRUISE-Screening is connected to several search engines via an API, which allows for updating the search results periodically. Moreover, it can facilitate the process of screening for relevant publications by using text classification and question answering models. CRUISE-Screening can be used both by researchers conducting literature reviews and by those working on automating the citation screening process to validate their algorithms. The application is open-source: https://github.com/ProjectDoSSIER/cruise-screening, and a demo is available under this URL: https://citation-screening.ec.tuwien.ac.at. We discuss the limitations of our tool in Appendix A.

Wojciech Kusa, Óscar E. Mendoza, Petr Knoth et al.

Clinical trials (CTs) often fail due to inadequate patient recruitment. This paper tackles the challenges of CT retrieval by presenting an approach that addresses the patient-to-trials paradigm. Our approach involves two key components in a pipeline-based model: (i) a data enrichment technique for enhancing both queries and documents during the first retrieval stage, and (ii) a novel re-ranking schema that uses a Transformer network in a setup adapted to this task by leveraging the structure of the CT documents. We use named entity recognition and negation detection in both patient description and the eligibility section of CTs. We further classify patient descriptions and CT eligibility criteria into current, past, and family medical conditions. This extracted information is used to boost the importance of disease and drug mentions in both query and index for lexical retrieval. Furthermore, we propose a two-step training schema for the Transformer network used to re-rank the results from the lexical retrieval. The first step focuses on matching patient information with the descriptive sections of trials, while the second step aims to determine eligibility by matching patient information with the criteria section. Our findings indicate that the inclusion criteria section of the CT has a great influence on the relevance score in lexical models, and that the enrichment techniques for queries and documents improve the retrieval of relevant trials. The re-ranking strategy, based on our training schema, consistently enhances CT retrieval and shows improved performance by 15\% in terms of precision at retrieving eligible trials. The results of our experiments suggest the benefit of making use of extracted entities. Moreover, our proposed re-ranking schema shows promising effectiveness compared to larger neural models, even with limited training data.

Wojciech Kusa, Oscar E. Mendoza, Matthias Samwald et al.

Systematic literature reviews (SLRs) play an essential role in summarising, synthesising and validating scientific evidence. In recent years, there has been a growing interest in using machine learning techniques to automate the identification of relevant studies for SLRs. However, the lack of standardised evaluation datasets makes comparing the performance of such automated literature screening systems difficult. In this paper, we analyse the citation screening evaluation datasets, revealing that many of the available datasets are either too small, suffer from data leakage or have limited applicability to systems treating automated literature screening as a classification task, as opposed to, for example, a retrieval or question-answering task. To address these challenges, we introduce CSMeD, a meta-dataset consolidating nine publicly released collections, providing unified access to 325 SLRs from the fields of medicine and computer science. CSMeD serves as a comprehensive resource for training and evaluating the performance of automated citation screening models. Additionally, we introduce CSMeD-FT, a new dataset designed explicitly for evaluating the full text publication screening task. To demonstrate the utility of CSMeD, we conduct experiments and establish baselines on new datasets.

Taishi Nakamura, Mayank Mishra, Simone Tedeschi et al. · ibm-research, stanford

Pretrained language models are an integral part of AI applications, but their high computational cost for training limits accessibility. Initiatives such as Bloom and StarCoder aim to democratize access to pretrained models for collaborative community development. Despite these efforts, such models encounter challenges such as limited multilingual capabilities, risks of catastrophic forgetting during continual pretraining, and the high costs of training models from scratch, alongside the need to align with AI safety standards and regulatory frameworks. This paper presents Aurora-M, a 15B parameter multilingual open-source model trained on English, Finnish, Hindi, Japanese, Vietnamese, and code. Continually pretrained from StarCoderPlus on 435B additional tokens, Aurora-M surpasses 2T tokens in total training token count. It is the first open-source multilingual model fine-tuned on human-reviewed safety instructions, thus aligning its development not only with conventional red-teaming considerations, but also with the specific concerns articulated in the Biden-Harris Executive Order on the Safe, Secure, and Trustworthy Development and Use of Artificial Intelligence. We evaluate Aurora-M across a wide range of tasks and languages, showcasing its robustness against catastrophic forgetting and its superior performance in multilingual settings, particularly in safety evaluations. We open-source Aurora-M and its variants to encourage responsible open-source development of large language models at https://huggingface.co/aurora-m.

Moritz Staudinger, Wojciech Kusa, Allan Hanbury

Benchmark collections have long enabled controlled comparison and cumulative progress in Information Retrieval (IR). However, prior meta-analyses have shown that reported effectiveness gains often fail to accumulate, in part due to the use of weak or outdated baselines. While large language models are increasingly used in retrieval pipelines, their impact on established IR benchmarks has not been systematically analyzed. In this study, we analyze 143 publications reporting results on the TREC Robust04 collection and the TREC Deep Learning 2020 (DL20) passage retrieval benchmark to examine longitudinal trends in retrieval effectiveness and baseline strength. We observe what we term an \emph{LLM effect}: recent systems incorporating LLM components achieve 8.8\% higher nDCG@10 on DL20 compared to the best result from TREC 2020 and approximately 20\% higher on Robust04 since 2023. However, adapting a data contamination detection approach to reranking reveals measurable contamination in both benchmarks. While excluding contaminated topics reduces effectiveness, confidence intervals remain wide, making it difficult to determine whether the LLM effect reflects genuine methodological advances or memorization from pretraining data.

Mikołaj Pokrywka, Wojciech Kusa, Mieszko Rutkowski et al.

Neural Machine Translation (NMT) has improved translation by using Transformer-based models, but it still struggles with word ambiguity and context. This problem is especially important in domain-specific applications, which often have problems with unclear sentences or poor data quality. Our research explores how adding information to models can improve translations in the context of e-commerce data. To this end we create ConECT -- a new Czech-to-Polish e-commerce product translation dataset coupled with images and product metadata consisting of 11,400 sentence pairs. We then investigate and compare different methods that are applicable to context-aware translation. We test a vision-language model (VLM), finding that visual context aids translation quality. Additionally, we explore the incorporation of contextual information into text-to-text models, such as the product's category path or image descriptions. The results of our study demonstrate that the incorporation of contextual information leads to an improvement in the quality of machine translation. We make the new dataset publicly available.

Grzegorz Statkiewicz, Alicja Dobrzeniecka, Karolina Seweryn et al.

Most vision-language models (VLMs) are trained on English-centric data, limiting their performance in other languages and cultural contexts. This restricts their usability for non-English-speaking users and hinders the development of multimodal systems that reflect diverse linguistic and cultural realities. In this work, we reproduce and adapt the LLaVA-Next methodology to create a set of Polish VLMs. We rely on a fully automated pipeline for translating and filtering existing multimodal datasets, and complement this with synthetic Polish data for OCR and culturally specific tasks. Despite relying almost entirely on automatic translation and minimal manual intervention to the training data, our approach yields strong results: we observe a +9.5% improvement over LLaVA-1.6-Vicuna-13B on a Polish-adapted MMBench, along with higher-quality captions in generative evaluations, as measured by human annotators in terms of linguistic correctness. These findings highlight that large-scale automated translation, combined with lightweight filtering, can effectively bootstrap high-quality multimodal models for low-resource languages. Some challenges remain, particularly in cultural coverage and evaluation. To facilitate further research, we make our models and evaluation dataset publicly available.

Aleksandra Krasnodębska, Karolina Seweryn, Szymon Łukasik et al.

Despite increasing efforts to ensure the safety of large language models (LLMs), most existing safety assessments and moderation tools remain heavily biased toward English and other high-resource languages, leaving majority of global languages underexamined. To address this gap, we introduce a manually annotated benchmark dataset for language model safety classification in Polish. We also create adversarially perturbed variants of these samples designed to challenge model robustness. We conduct a series of experiments to evaluate LLM-based and classifier-based models of varying sizes and architectures. Specifically, we fine-tune three models: Llama-Guard-3-8B, a HerBERT-based classifier (a Polish BERT derivative), and PLLuM, a Polish-adapted Llama-8B model. We train these models using different combinations of annotated data and evaluate their performance, comparing it against publicly available guard models. Results demonstrate that the HerBERT-based classifier achieves the highest overall performance, particularly under adversarial conditions.

Pia Pachinger, Janis Goldzycher, Anna Maria Planitzer et al.

Model interpretability in toxicity detection greatly profits from token-level annotations. However, currently such annotations are only available in English. We introduce a dataset annotated for offensive language detection sourced from a news forum, notable for its incorporation of the Austrian German dialect, comprising 4,562 user comments. In addition to binary offensiveness classification, we identify spans within each comment constituting vulgar language or representing targets of offensive statements. We evaluate fine-tuned language models as well as large language models in a zero- and few-shot fashion. The results indicate that while fine-tuned models excel in detecting linguistic peculiarities such as vulgar dialect, large language models demonstrate superior performance in detecting offensiveness in AustroTox. We publish the data and code.

Wojciech Kusa, Allan Hanbury, Petr Knoth

In the process of Systematic Literature Review, citation screening is estimated to be one of the most time-consuming steps. Multiple approaches to automate it using various machine learning techniques have been proposed. The first research papers that apply deep neural networks to this problem were published in the last two years. In this work, we conduct a replicability study of the first two deep learning papers for citation screening and evaluate their performance on 23 publicly available datasets. While we succeeded in replicating the results of one of the papers, we were unable to replicate the results of the other. We summarise the challenges involved in the replication, including difficulties in obtaining the datasets to match the experimental setup of the original papers and problems with executing the original source code. Motivated by this experience, we subsequently present a simpler model based on averaging word embeddings that outperforms one of the models on 18 out of 23 datasets and is, on average, 72 times faster than the second replicated approach. Finally, we measure the training time and the invariance of the models when exposed to a variety of input features and random initialisations, demonstrating differences in the robustness of these approaches.

Wojciech Kusa, Michael Spranger

This paper evaluates the impact of various event extraction systems on automatic pathway curation using the popular mTOR pathway. We quantify the impact of training data sets as well as different machine learning classifiers and show that some improve the quality of automatically extracted pathways.