Tyler R. Josephson

Charles Fox, Neil Tran, Nikki Nacion et al.

Symbolic Regression (SR) can generate interpretable, concise expressions that fit a given dataset, allowing for more human understanding of the structure than black-box approaches. The addition of background knowledge (in the form of symbolic mathematical constraints) allows for the generation of expressions that are meaningful with respect to theory while also being consistent with data. We specifically examine the addition of constraints to traditional genetic algorithm (GA) based SR (PySR) as well as a Markov-chain Monte Carlo (MCMC) based Bayesian SR architecture (Bayesian Machine Scientist), and apply these to rediscovering adsorption equations from experimental, historical datasets. We find that, while hard constraints prevent GA and MCMC SR from searching, soft constraints can lead to improved performance both in terms of search effectiveness and model meaningfulness, with computational costs increasing by about an order-of-magnitude. If the constraints do not correlate well with the dataset or expected models, they can hinder the search of expressions. We find Bayesian SR is better these constraints (as the Bayesian prior) than by modifying the fitness function in the GA

Ejike D. Ugwuanyi, Colin T. Jones, John Velkey et al.

The Brunauer--Emmett--Teller (BET) method is a standard tool for estimating surface areas from adsorption isotherms, yet practical implementations involve multiple algorithmic steps whose correctness is rarely made explicit. In this work, we present a fully executable and formally verified BET analysis pipeline implemented in the Lean~4 theorem prover. Our formalization covers the complete BET Surface Identification (BETSI)-style workflow, including window enumeration, monotonicity checks, knee selection, and linear regression. We carry out computations in floating-point arithmetic and develop the corresponding correctness proofs over the real numbers, using a shared polymorphic implementation that supports both. On the proof side, we show that the regression coefficients returned by the algorithm agree with their specification-level definitions and minimize the least-squares error under the stated assumptions. We also formalize the algebraic derivation of the BET linearized expression and connect that result directly to the executable analysis pipeline. We further prove that the window enumeration is sound and complete, and that the admissibility checks and knee-based selection satisfy their formal specifications. We evaluate the implementation against the BETSI reference method on benchmark adsorption isotherms. Compared to BETSI, LeanBET agrees to machine precision for 18 of the 19 isotherms, with only a 0.03\% deviation for the UiO-66 dataset. This demonstrates that a scientific computing workflow can be built in Lean, yielding both formal verification guarantees and numerical agreement with an established Python reference implementation.

Aritra Roy, Kevin Shen, Andrew MacBride et al.

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

Yoel Zimmermann, Adib Bazgir, Zartashia Afzal et al.

Here, we present the outcomes from the second Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry, which engaged participants across global hybrid locations, resulting in 34 team submissions. The submissions spanned seven key application areas and demonstrated the diverse utility of LLMs for applications in (1) molecular and material property prediction; (2) molecular and material design; (3) automation and novel interfaces; (4) scientific communication and education; (5) research data management and automation; (6) hypothesis generation and evaluation; and (7) knowledge extraction and reasoning from scientific literature. Each team submission is presented in a summary table with links to the code and as brief papers in the appendix. Beyond team results, we discuss the hackathon event and its hybrid format, which included physical hubs in Toronto, Montreal, San Francisco, Berlin, Lausanne, and Tokyo, alongside a global online hub to enable local and virtual collaboration. Overall, the event highlighted significant improvements in LLM capabilities since the previous year's hackathon, suggesting continued expansion of LLMs for applications in materials science and chemistry research. These outcomes demonstrate the dual utility of LLMs as both multipurpose models for diverse machine learning tasks and platforms for rapid prototyping custom applications in scientific research.

Samiha Sharlin, Tyler R. Josephson

Large Language Models (LLMs) are transformer-based machine learning models that have shown remarkable performance in tasks for which they were not explicitly trained. Here, we explore the potential of LLMs to perform symbolic regression -- a machine-learning method for finding simple and accurate equations from datasets. We prompt GPT-4 to suggest expressions from data, which are then optimized and evaluated using external Python tools. These results are fed back to GPT-4, which proposes improved expressions while optimizing for complexity and loss. Using chain-of-thought prompting, we instruct GPT-4 to analyze the data, prior expressions, and the scientific context (expressed in natural language) for each problem before generating new expressions. We evaluated the workflow in rediscovery of five well-known scientific equations from experimental data, and on an additional dataset without a known equation. GPT-4 successfully rediscovered all five equations, and in general, performed better when prompted to use a scratchpad and consider scientific context. We demonstrate how strategic prompting improves the model's performance and how the natural language interface simplifies integrating theory with data. We also observe how theory can sometimes offset noisy data and, in other cases, data can make up for poor context. Although this approach does not outperform established SR programs where target equations are more complex, LLMs can nonetheless iterate toward improved solutions while following instructions and incorporating scientific context in natural language.

Vinay K Chaudhri, Chaitan Baru, Brandon Bennett et al.

The long-standing goal of creating a comprehensive, multi-purpose knowledge resource, reminiscent of the 1984 Cyc project, still persists in AI. Despite the success of knowledge resources like WordNet, ConceptNet, Wolfram|Alpha and other commercial knowledge graphs, verifiable, general-purpose widely available sources of knowledge remain a critical deficiency in AI infrastructure. Large language models struggle due to knowledge gaps; robotic planning lacks necessary world knowledge; and the detection of factually false information relies heavily on human expertise. What kind of knowledge resource is most needed in AI today? How can modern technology shape its development and evaluation? A recent AAAI workshop gathered over 50 researchers to explore these questions. This paper synthesizes our findings and outlines a community-driven vision for a new knowledge infrastructure. In addition to leveraging contemporary advances in knowledge representation and reasoning, one promising idea is to build an open engineering framework to exploit knowledge modules effectively within the context of practical applications. Such a framework should include sets of conventions and social structures that are adopted by contributors.