LGNov 12, 2023
Attention for Causal Relationship Discovery from Biological Neural DynamicsZiyu Lu, Anika Tabassum, Shruti Kulkarni et al.
This paper explores the potential of the transformer models for learning Granger causality in networks with complex nonlinear dynamics at every node, as in neurobiological and biophysical networks. Our study primarily focuses on a proof-of-concept investigation based on simulated neural dynamics, for which the ground-truth causality is known through the underlying connectivity matrix. For transformer models trained to forecast neuronal population dynamics, we show that the cross attention module effectively captures the causal relationship among neurons, with an accuracy equal or superior to that for the most popular Granger causality analysis method. While we acknowledge that real-world neurobiology data will bring further challenges, including dynamic connectivity and unobserved variability, this research offers an encouraging preliminary glimpse into the utility of the transformer model for causal representation learning in neuroscience.
NEJun 17, 2025Code
NeuroCoreX: An Open-Source FPGA-Based Spiking Neural Network Emulator with On-Chip LearningAshish Gautam, Prasanna Date, Shruti Kulkarni et al.
Spiking Neural Networks (SNNs) are computational models inspired by the structure and dynamics of biological neuronal networks. Their event-driven nature enables them to achieve high energy efficiency, particularly when deployed on neuromorphic hardware platforms. Unlike conventional Artificial Neural Networks (ANNs), which primarily rely on layered architectures, SNNs naturally support a wide range of connectivity patterns, from traditional layered structures to small-world graphs characterized by locally dense and globally sparse connections. In this work, we introduce NeuroCoreX, an FPGA-based emulator designed for the flexible co-design and testing of SNNs. NeuroCoreX supports all-to-all connectivity, providing the capability to implement diverse network topologies without architectural restrictions. It features a biologically motivated local learning mechanism based on Spike-Timing-Dependent Plasticity (STDP). The neuron model implemented within NeuroCoreX is the Leaky Integrate-and-Fire (LIF) model, with current-based synapses facilitating spike integration and transmission . A Universal Asynchronous Receiver-Transmitter (UART) interface is provided for programming and configuring the network parameters, including neuron, synapse, and learning rule settings. Users interact with the emulator through a simple Python-based interface, streamlining SNN deployment from model design to hardware execution. NeuroCoreX is released as an open-source framework, aiming to accelerate research and development in energy-efficient, biologically inspired computing.
ETApr 25, 2024
Transductive Spiking Graph Neural Networks for LoihiShay Snyder, Victoria Clerico, Guojing Cong et al.
Graph neural networks have emerged as a specialized branch of deep learning, designed to address problems where pairwise relations between objects are crucial. Recent advancements utilize graph convolutional neural networks to extract features within graph structures. Despite promising results, these methods face challenges in real-world applications due to sparse features, resulting in inefficient resource utilization. Recent studies draw inspiration from the mammalian brain and employ spiking neural networks to model and learn graph structures. However, these approaches are limited to traditional Von Neumann-based computing systems, which still face hardware inefficiencies. In this study, we present a fully neuromorphic implementation of spiking graph neural networks designed for Loihi 2. We optimize network parameters using Lava Bayesian Optimization, a novel hyperparameter optimization system compatible with neuromorphic computing architectures. We showcase the performance benefits of combining neuromorphic Bayesian optimization with our approach for citation graph classification using fixed-precision spiking neurons. Our results demonstrate the capability of integer-precision, Loihi 2 compatible spiking neural networks in performing citation graph classification with comparable accuracy to existing floating point implementations.